HEADER DE NOVO PROTEIN 25-FEB-16 5IF6 TITLE STRUCTURE OF A COMPUTATIONALLY DESIGNED 17-OHP BINDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: OHP9_1C; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSETTA, LIGAND BINDER, COMPUTATIONAL, STRUCTURAL GENOMICS, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.L.STODDARD,L.A.DOYLE REVDAT 5 27-SEP-23 5IF6 1 REMARK REVDAT 4 25-DEC-19 5IF6 1 REMARK REVDAT 3 07-FEB-18 5IF6 1 JRNL REVDAT 2 27-SEP-17 5IF6 1 REMARK REVDAT 1 01-MAR-17 5IF6 0 JRNL AUTH J.DOU,L.DOYLE,P.JR GREISEN,A.SCHENA,H.PARK,K.JOHNSSON, JRNL AUTH 2 B.L.STODDARD,D.BAKER JRNL TITL SAMPLING AND ENERGY EVALUATION CHALLENGES IN LIGAND BINDING JRNL TITL 2 PROTEIN DESIGN. JRNL REF PROTEIN SCI. V. 26 2426 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28980354 JRNL DOI 10.1002/PRO.3317 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6872 - 6.0202 1.00 2412 154 0.1854 0.2257 REMARK 3 2 6.0202 - 4.7817 1.00 2315 148 0.1775 0.2127 REMARK 3 3 4.7817 - 4.1782 1.00 2284 145 0.1561 0.1692 REMARK 3 4 4.1782 - 3.7967 1.00 2262 144 0.2041 0.2234 REMARK 3 5 3.7967 - 3.5248 1.00 2271 145 0.2147 0.2625 REMARK 3 6 3.5248 - 3.3171 1.00 2244 143 0.2356 0.3003 REMARK 3 7 3.3171 - 3.1511 1.00 2245 143 0.2574 0.2735 REMARK 3 8 3.1511 - 3.0140 1.00 2230 142 0.2591 0.2744 REMARK 3 9 3.0140 - 2.8980 1.00 2258 144 0.2575 0.2808 REMARK 3 10 2.8980 - 2.7980 1.00 2204 141 0.2608 0.3087 REMARK 3 11 2.7980 - 2.7106 1.00 2262 144 0.2798 0.3245 REMARK 3 12 2.7106 - 2.6331 1.00 2203 140 0.2829 0.3181 REMARK 3 13 2.6331 - 2.5638 0.99 2194 140 0.2986 0.3171 REMARK 3 14 2.5638 - 2.5013 0.90 1996 127 0.3226 0.3437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6108 REMARK 3 ANGLE : 0.793 8379 REMARK 3 CHIRALITY : 0.031 983 REMARK 3 PLANARITY : 0.003 1071 REMARK 3 DIHEDRAL : 12.099 2062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN B AND SEGID REMARK 3 ATOM PAIRS NUMBER : 4355 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN C AND SEGID REMARK 3 ATOM PAIRS NUMBER : 4355 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN D AND SEGID REMARK 3 ATOM PAIRS NUMBER : 4355 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN E AND SEGID REMARK 3 ATOM PAIRS NUMBER : 4355 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID REMARK 3 SELECTION : CHAIN F AND SEGID REMARK 3 ATOM PAIRS NUMBER : 4355 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2A15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5 + 15% REMARK 280 PEG3000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.07700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.39350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.07700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.39350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 1 REMARK 465 PHE F 95 REMARK 465 ASP F 96 REMARK 465 GLY F 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 HIS A 92 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ASP A 96 CG OD1 OD2 REMARK 470 ASP A 127 CG OD1 OD2 REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 ARG B 68 CD NE CZ NH1 NH2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 ASP B 96 CG OD1 OD2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 GLN C 2 CG CD OE1 NE2 REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 ASP C 30 CG OD1 OD2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 LYS C 51 NZ REMARK 470 GLU C 54 CG CD OE1 OE2 REMARK 470 ASP C 66 CG OD1 OD2 REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 95 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP C 96 CG OD1 OD2 REMARK 470 LYS C 113 CG CD CE NZ REMARK 470 ASP C 127 CG OD1 OD2 REMARK 470 LYS D 19 CD CE NZ REMARK 470 GLU D 22 CG CD OE1 OE2 REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 LYS D 53 NZ REMARK 470 ARG D 68 CD NE CZ NH1 NH2 REMARK 470 GLU D 74 CG CD OE1 OE2 REMARK 470 PHE D 95 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP D 96 CG OD1 OD2 REMARK 470 LYS D 113 CG CD CE NZ REMARK 470 ILE E 7 CD1 REMARK 470 SER E 11 OG REMARK 470 LEU E 12 CG CD1 CD2 REMARK 470 ARG E 14 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 17 CG CD OE1 NE2 REMARK 470 LYS E 19 CG CD CE NZ REMARK 470 GLU E 22 CG CD OE1 OE2 REMARK 470 LYS E 40 CG CD CE NZ REMARK 470 LYS E 53 CG CD CE NZ REMARK 470 GLU E 54 CG CD OE1 OE2 REMARK 470 ASP E 66 CG OD1 OD2 REMARK 470 ASP E 67 CG OD1 OD2 REMARK 470 ARG E 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 94 CG CD OE1 OE2 REMARK 470 ASP E 96 CG OD1 OD2 REMARK 470 LYS E 113 CG CD CE NZ REMARK 470 ARG F 14 CG CD NE CZ NH1 NH2 REMARK 470 GLN F 17 CG CD OE1 NE2 REMARK 470 LYS F 19 CD CE NZ REMARK 470 GLU F 22 CG CD OE1 OE2 REMARK 470 LYS F 40 CD CE NZ REMARK 470 SER F 48 OG REMARK 470 GLU F 54 CG CD OE1 OE2 REMARK 470 ASP F 66 CG OD1 OD2 REMARK 470 ASP F 67 CG OD1 OD2 REMARK 470 ARG F 68 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 94 CD OE1 OE2 REMARK 470 VAL F 111 CG1 CG2 REMARK 470 LYS F 113 CG CD CE NZ REMARK 470 ASN F 133 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS F 92 OE2 GLU F 102 1.40 REMARK 500 NE2 HIS F 92 OE2 GLU F 102 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 -168.67 -107.11 REMARK 500 SER B 79 -169.20 -106.12 REMARK 500 SER C 79 -168.71 -106.54 REMARK 500 ASP C 96 98.32 -51.64 REMARK 500 SER D 79 -168.24 -106.70 REMARK 500 ASP D 96 72.37 -20.12 REMARK 500 SER E 79 -168.72 -106.45 REMARK 500 ASP E 96 103.78 -56.94 REMARK 500 SER F 79 -167.90 -105.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QZ F 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IEN RELATED DB: PDB REMARK 900 RELATED ID: 5IEO RELATED DB: PDB REMARK 900 RELATED ID: 5IEP RELATED DB: PDB REMARK 900 RELATED ID: 5IER RELATED DB: PDB DBREF 5IF6 A 1 134 PDB 5IF6 5IF6 1 134 DBREF 5IF6 B 1 134 PDB 5IF6 5IF6 1 134 DBREF 5IF6 C 1 134 PDB 5IF6 5IF6 1 134 DBREF 5IF6 D 1 134 PDB 5IF6 5IF6 1 134 DBREF 5IF6 E 1 134 PDB 5IF6 5IF6 1 134 DBREF 5IF6 F 1 134 PDB 5IF6 5IF6 1 134 SEQRES 1 A 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 A 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 A 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 A 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 A 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 A 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 A 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 A 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 A 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 A 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 A 134 PHE GLY ASN GLN SEQRES 1 B 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 B 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 B 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 B 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 B 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 B 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 B 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 B 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 B 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 B 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 B 134 PHE GLY ASN GLN SEQRES 1 C 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 C 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 C 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 C 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 C 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 C 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 C 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 C 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 C 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 C 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 C 134 PHE GLY ASN GLN SEQRES 1 D 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 D 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 D 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 D 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 D 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 D 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 D 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 D 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 D 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 D 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 D 134 PHE GLY ASN GLN SEQRES 1 E 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 E 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 E 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 E 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 E 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 E 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 E 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 E 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 E 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 E 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 E 134 PHE GLY ASN GLN SEQRES 1 F 134 THR GLN SER PRO ALA LEU ILE ALA SER GLN SER LEU GLY SEQRES 2 F 134 ARG CYS THR GLN ALA LYS ASP ARG GLU GLY TRP LEU ALA SEQRES 3 F 134 LEU MET ALA ASP ASP VAL VAL ILE GLU THR PRO ILE GLY SEQRES 4 F 134 LYS SER VAL THR ASN PRO ASP GLY SER GLY ILE LYS GLY SEQRES 5 F 134 LYS GLU ALA VAL GLY ALA PHE TRP ASP THR HIS ILE ALA SEQRES 6 F 134 ASP ASP ARG VAL THR VAL THR CYS GLU GLU THR PHE PRO SEQRES 7 F 134 SER SER SER PRO ASP GLU ILE ALA HIS ILE LEU VAL ALA SEQRES 8 F 134 HIS ALA GLU PHE ASP GLY GLY PHE THR SER GLU VAL ARG SEQRES 9 F 134 GLY VAL PHE THR TYR ARG VAL ASN LYS ALA GLY LEU ILE SEQRES 10 F 134 THR ASN LEU ARG GLY TYR TYR ASN LEU ASP MET MET THR SEQRES 11 F 134 PHE GLY ASN GLN HET 3QZ A 201 54 HET NA A 202 1 HET 3QZ B 201 54 HET NA B 202 1 HET 3QZ C 201 54 HET 3QZ D 201 54 HET NA D 202 1 HET 3QZ E 201 54 HET 3QZ F 201 54 HETNAM 3QZ (9BETA)-17-HYDROXYPREGN-4-ENE-3,20-DIONE HETNAM NA SODIUM ION FORMUL 7 3QZ 6(C21 H30 O3) FORMUL 8 NA 3(NA 1+) FORMUL 16 HOH *48(H2 O) HELIX 1 AA1 SER A 3 GLN A 17 1 15 HELIX 2 AA2 ASP A 20 LEU A 27 1 8 HELIX 3 AA3 GLY A 52 ILE A 64 1 13 HELIX 4 AA4 ASN A 125 MET A 129 5 5 HELIX 5 AA5 SER B 3 ALA B 18 1 16 HELIX 6 AA6 ASP B 20 ALA B 26 1 7 HELIX 7 AA7 GLY B 52 ILE B 64 1 13 HELIX 8 AA8 ASN B 125 MET B 129 5 5 HELIX 9 AA9 SER C 3 GLN C 17 1 15 HELIX 10 AB1 ASP C 20 LEU C 27 1 8 HELIX 11 AB2 GLY C 52 ILE C 64 1 13 HELIX 12 AB3 ASN C 125 MET C 129 5 5 HELIX 13 AB4 SER D 3 GLN D 17 1 15 HELIX 14 AB5 ASP D 20 LEU D 27 1 8 HELIX 15 AB6 GLY D 52 ILE D 64 1 13 HELIX 16 AB7 ASN D 125 MET D 129 5 5 HELIX 17 AB8 SER E 3 GLN E 17 1 15 HELIX 18 AB9 ASP E 20 LEU E 27 1 8 HELIX 19 AC1 GLY E 52 ILE E 64 1 13 HELIX 20 AC2 ASN E 125 MET E 129 5 5 HELIX 21 AC3 SER F 3 GLN F 17 1 15 HELIX 22 AC4 ASP F 20 LEU F 27 1 8 HELIX 23 AC5 GLY F 52 ILE F 64 1 13 HELIX 24 AC6 ASN F 125 MET F 129 5 5 SHEET 1 AA1 6 ILE A 50 LYS A 51 0 SHEET 2 AA1 6 MET A 28 GLU A 35 -1 N ILE A 34 O ILE A 50 SHEET 3 AA1 6 ILE A 117 TYR A 123 1 O LEU A 120 N GLU A 35 SHEET 4 AA1 6 PHE A 99 VAL A 111 -1 N VAL A 106 O TYR A 123 SHEET 5 AA1 6 GLU A 84 PHE A 95 -1 N ILE A 85 O TYR A 109 SHEET 6 AA1 6 THR A 70 PRO A 78 -1 N PHE A 77 O ALA A 86 SHEET 1 AA2 5 ILE A 50 LYS A 51 0 SHEET 2 AA2 5 MET A 28 GLU A 35 -1 N ILE A 34 O ILE A 50 SHEET 3 AA2 5 ILE A 117 TYR A 123 1 O LEU A 120 N GLU A 35 SHEET 4 AA2 5 PHE A 99 VAL A 111 -1 N VAL A 106 O TYR A 123 SHEET 5 AA2 5 THR A 130 GLY A 132 -1 O THR A 130 N GLU A 102 SHEET 1 AA3 6 ILE B 50 LYS B 51 0 SHEET 2 AA3 6 MET B 28 GLU B 35 -1 N ILE B 34 O ILE B 50 SHEET 3 AA3 6 ILE B 117 TYR B 123 1 O ILE B 117 N ALA B 29 SHEET 4 AA3 6 THR B 100 VAL B 111 -1 N VAL B 106 O TYR B 123 SHEET 5 AA3 6 GLU B 84 GLU B 94 -1 N HIS B 87 O PHE B 107 SHEET 6 AA3 6 THR B 70 PRO B 78 -1 N PHE B 77 O ALA B 86 SHEET 1 AA4 5 ILE B 50 LYS B 51 0 SHEET 2 AA4 5 MET B 28 GLU B 35 -1 N ILE B 34 O ILE B 50 SHEET 3 AA4 5 ILE B 117 TYR B 123 1 O ILE B 117 N ALA B 29 SHEET 4 AA4 5 THR B 100 VAL B 111 -1 N VAL B 106 O TYR B 123 SHEET 5 AA4 5 THR B 130 GLY B 132 -1 O THR B 130 N GLU B 102 SHEET 1 AA5 6 ILE C 50 LYS C 51 0 SHEET 2 AA5 6 MET C 28 GLU C 35 -1 N ILE C 34 O ILE C 50 SHEET 3 AA5 6 ILE C 117 TYR C 123 1 O LEU C 120 N GLU C 35 SHEET 4 AA5 6 THR C 100 VAL C 111 -1 N ARG C 110 O THR C 118 SHEET 5 AA5 6 GLU C 84 GLU C 94 -1 N ILE C 85 O TYR C 109 SHEET 6 AA5 6 THR C 70 PRO C 78 -1 N PHE C 77 O ALA C 86 SHEET 1 AA6 5 ILE C 50 LYS C 51 0 SHEET 2 AA6 5 MET C 28 GLU C 35 -1 N ILE C 34 O ILE C 50 SHEET 3 AA6 5 ILE C 117 TYR C 123 1 O LEU C 120 N GLU C 35 SHEET 4 AA6 5 THR C 100 VAL C 111 -1 N ARG C 110 O THR C 118 SHEET 5 AA6 5 THR C 130 GLY C 132 -1 O THR C 130 N GLU C 102 SHEET 1 AA7 6 ILE D 50 LYS D 51 0 SHEET 2 AA7 6 MET D 28 GLU D 35 -1 N ILE D 34 O ILE D 50 SHEET 3 AA7 6 ILE D 117 TYR D 123 1 O LEU D 120 N GLU D 35 SHEET 4 AA7 6 PHE D 99 VAL D 111 -1 N ARG D 110 O THR D 118 SHEET 5 AA7 6 GLU D 84 PHE D 95 -1 N PHE D 95 O PHE D 99 SHEET 6 AA7 6 THR D 70 PRO D 78 -1 N PHE D 77 O ALA D 86 SHEET 1 AA8 5 ILE D 50 LYS D 51 0 SHEET 2 AA8 5 MET D 28 GLU D 35 -1 N ILE D 34 O ILE D 50 SHEET 3 AA8 5 ILE D 117 TYR D 123 1 O LEU D 120 N GLU D 35 SHEET 4 AA8 5 PHE D 99 VAL D 111 -1 N ARG D 110 O THR D 118 SHEET 5 AA8 5 THR D 130 GLY D 132 -1 O THR D 130 N GLU D 102 SHEET 1 AA9 6 ILE E 50 LYS E 51 0 SHEET 2 AA9 6 MET E 28 GLU E 35 -1 N ILE E 34 O ILE E 50 SHEET 3 AA9 6 ILE E 117 TYR E 123 1 O LEU E 120 N GLU E 35 SHEET 4 AA9 6 THR E 100 VAL E 111 -1 N VAL E 106 O TYR E 123 SHEET 5 AA9 6 GLU E 84 GLU E 94 -1 N ILE E 85 O TYR E 109 SHEET 6 AA9 6 THR E 70 PRO E 78 -1 N PHE E 77 O ALA E 86 SHEET 1 AB1 5 ILE E 50 LYS E 51 0 SHEET 2 AB1 5 MET E 28 GLU E 35 -1 N ILE E 34 O ILE E 50 SHEET 3 AB1 5 ILE E 117 TYR E 123 1 O LEU E 120 N GLU E 35 SHEET 4 AB1 5 THR E 100 VAL E 111 -1 N VAL E 106 O TYR E 123 SHEET 5 AB1 5 THR E 130 GLY E 132 -1 O THR E 130 N GLU E 102 SHEET 1 AB2 6 ILE F 50 LYS F 51 0 SHEET 2 AB2 6 MET F 28 GLU F 35 -1 N ILE F 34 O ILE F 50 SHEET 3 AB2 6 ILE F 117 TYR F 123 1 O ILE F 117 N ALA F 29 SHEET 4 AB2 6 THR F 100 VAL F 111 -1 N ARG F 110 O THR F 118 SHEET 5 AB2 6 GLU F 84 ALA F 93 -1 N HIS F 87 O PHE F 107 SHEET 6 AB2 6 THR F 70 PRO F 78 -1 N PHE F 77 O ALA F 86 SHEET 1 AB3 5 ILE F 50 LYS F 51 0 SHEET 2 AB3 5 MET F 28 GLU F 35 -1 N ILE F 34 O ILE F 50 SHEET 3 AB3 5 ILE F 117 TYR F 123 1 O ILE F 117 N ALA F 29 SHEET 4 AB3 5 THR F 100 VAL F 111 -1 N ARG F 110 O THR F 118 SHEET 5 AB3 5 THR F 130 GLY F 132 -1 O THR F 130 N GLU F 102 CISPEP 1 THR A 36 PRO A 37 0 -0.38 CISPEP 2 THR B 36 PRO B 37 0 1.53 CISPEP 3 THR C 36 PRO C 37 0 0.85 CISPEP 4 THR D 36 PRO D 37 0 0.58 CISPEP 5 THR E 36 PRO E 37 0 1.03 CISPEP 6 THR F 36 PRO F 37 0 0.47 SITE 1 AC1 7 LEU A 12 THR A 16 PHE A 107 TYR A 124 SITE 2 AC1 7 HOH A 301 HOH A 302 PHE F 99 SITE 1 AC2 1 SER A 9 SITE 1 AC3 8 LEU B 12 THR B 16 ALA B 91 PHE B 107 SITE 2 AC3 8 TYR B 124 HOH B 301 HOH B 303 PHE E 99 SITE 1 AC4 1 SER B 9 SITE 1 AC5 7 LEU C 12 GLY C 13 THR C 16 ALA C 91 SITE 2 AC5 7 PHE C 107 TYR C 124 PHE D 99 SITE 1 AC6 7 PHE C 99 THR D 16 TRP D 24 THR D 43 SITE 2 AC6 7 VAL D 103 PHE D 107 TYR D 124 SITE 1 AC7 7 PHE B 99 GLY E 13 THR E 16 THR E 43 SITE 2 AC7 7 ALA E 91 PHE E 107 TYR E 124 SITE 1 AC8 7 LEU F 12 THR F 16 THR F 43 VAL F 71 SITE 2 AC8 7 PHE F 107 TYR F 124 HOH F 301 CRYST1 80.020 100.787 118.154 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012497 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008464 0.00000