HEADER IMMUNE SYSTEM 25-FEB-16 5IFA TITLE CRYSTAL STRUCTURE OF UNBOUND VRC01C-HUGL2 FAB FROM AN HIV-1 NAIVE TITLE 2 DONOR AT 1.82 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: VRC01C-HUGL2 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VRC01C-HUGL2 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 FREESTYLE; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFUSESS-CHIG-HG1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 FREESTYLE; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFUSESS-CHIG-HG1 KEYWDS VRC01-CLASS NAIVE HUMAN GERMLINE ANTIBODY, CD4 BINDING SITE, IMMUNE KEYWDS 2 SYSTEM, ANTI-HIV-1 EXPDTA X-RAY DIFFRACTION AUTHOR A.SARKAR,I.A.WILSON REVDAT 2 27-SEP-23 5IFA 1 JRNL REMARK LINK REVDAT 1 06-APR-16 5IFA 0 JRNL AUTH J.G.JARDINE,D.W.KULP,C.HAVENAR-DAUGHTON,A.SARKAR,B.BRINEY, JRNL AUTH 2 D.SOK,F.SESTERHENN,J.ERENO-ORBEA,O.KALYUZHNIY,I.DERESA,X.HU, JRNL AUTH 3 S.SPENCER,M.JONES,E.GEORGESON,Y.ADACHI,M.KUBITZ,A.C.DECAMP, JRNL AUTH 4 J.P.JULIEN,I.A.WILSON,D.R.BURTON,S.CROTTY,W.R.SCHIEF JRNL TITL HIV-1 BROADLY NEUTRALIZING ANTIBODY PRECURSOR B CELLS JRNL TITL 2 REVEALED BY GERMLINE-TARGETING IMMUNOGEN. JRNL REF SCIENCE V. 351 1458 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27013733 JRNL DOI 10.1126/SCIENCE.AAD9195 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 40836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8544 - 4.4908 0.98 2885 152 0.1995 0.2139 REMARK 3 2 4.4908 - 3.5648 0.97 2698 142 0.1747 0.2044 REMARK 3 3 3.5648 - 3.1143 0.98 2723 144 0.1916 0.2036 REMARK 3 4 3.1143 - 2.8296 0.97 2640 139 0.2007 0.2862 REMARK 3 5 2.8296 - 2.6268 0.98 2696 142 0.2169 0.2266 REMARK 3 6 2.6268 - 2.4719 0.99 2701 142 0.2149 0.2430 REMARK 3 7 2.4719 - 2.3481 0.99 2673 141 0.2178 0.2884 REMARK 3 8 2.3481 - 2.2459 0.97 2649 140 0.2349 0.2977 REMARK 3 9 2.2459 - 2.1594 0.98 2636 138 0.2216 0.2995 REMARK 3 10 2.1594 - 2.0849 0.99 2650 139 0.2367 0.3001 REMARK 3 11 2.0849 - 2.0197 0.98 2666 141 0.2395 0.2998 REMARK 3 12 2.0197 - 1.9620 0.98 2629 138 0.2459 0.3122 REMARK 3 13 1.9620 - 1.9103 0.97 2618 138 0.2523 0.3014 REMARK 3 14 1.9103 - 1.8637 0.95 2560 134 0.2841 0.3827 REMARK 3 15 1.8637 - 1.8214 0.51 1369 73 0.3075 0.3313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3445 REMARK 3 ANGLE : 1.038 4673 REMARK 3 CHIRALITY : 0.060 511 REMARK 3 PLANARITY : 0.006 588 REMARK 3 DIHEDRAL : 14.629 2062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7268 116.0258 16.0987 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.3176 REMARK 3 T33: 0.3532 T12: -0.0118 REMARK 3 T13: 0.0154 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.5547 L22: 3.3795 REMARK 3 L33: 1.1155 L12: -1.5683 REMARK 3 L13: 0.7826 L23: -1.2696 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.0017 S13: -0.1276 REMARK 3 S21: -0.0208 S22: 0.0765 S23: -0.0464 REMARK 3 S31: 0.0375 S32: -0.0779 S33: -0.0496 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1200 148.5916 6.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.3014 REMARK 3 T33: 0.2891 T12: -0.0133 REMARK 3 T13: 0.0459 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.7913 L22: 7.7503 REMARK 3 L33: 2.1988 L12: 1.7380 REMARK 3 L13: 0.2188 L23: 1.3795 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.0286 S13: 0.3463 REMARK 3 S21: -0.4467 S22: 0.0102 S23: -0.4493 REMARK 3 S31: -0.2927 S32: 0.1366 S33: -0.0444 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 111:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3795 152.3212 16.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.2565 T22: 0.2302 REMARK 3 T33: 0.3321 T12: -0.0199 REMARK 3 T13: 0.0145 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 4.9508 L22: 2.1260 REMARK 3 L33: 5.0156 L12: -0.8727 REMARK 3 L13: 3.7777 L23: -0.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.2207 S12: 0.0662 S13: -0.3185 REMARK 3 S21: -0.0771 S22: -0.1230 S23: 0.1889 REMARK 3 S31: 0.0863 S32: -0.0291 S33: -0.1227 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5141 129.6869 34.4776 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.3220 REMARK 3 T33: 0.2808 T12: 0.0007 REMARK 3 T13: -0.0021 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.7533 L22: 8.3028 REMARK 3 L33: 2.9624 L12: -0.5208 REMARK 3 L13: 0.5736 L23: 0.6815 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: -0.1600 S13: -0.1922 REMARK 3 S21: 0.4060 S22: 0.0524 S23: 0.0019 REMARK 3 S31: 0.4068 S32: 0.0682 S33: -0.0776 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V706E REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V706E REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 48.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16300 REMARK 200 FOR THE DATA SET : 0.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4JPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE AND 20% (W/V) REMARK 280 PEG3350, AND CRYO-PROTECTED WITH 25% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.53150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.10050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.53150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.10050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 SER L 27A REMARK 465 VAL L 27B REMARK 465 LEU L 27C REMARK 465 TYR L 27D REMARK 465 SER L 27E REMARK 465 SER L 27F REMARK 465 VAL L 191 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL H 309 O HOH H 401 1.82 REMARK 500 CE LYS H 129 C16 1PE H 307 2.12 REMARK 500 O2 GOL L 303 O HOH L 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -34.11 73.29 REMARK 500 SER L 77 77.63 50.43 REMARK 500 ALA L 84 175.94 179.51 REMARK 500 TYR L 91 -113.45 51.35 REMARK 500 ASN L 152 -0.94 61.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE H 304 REMARK 610 1PE H 305 REMARK 610 1PE H 306 REMARK 610 1PE H 307 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE H 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IF0 RELATED DB: PDB REMARK 900 RELATED ID: 5IES RELATED DB: PDB DBREF 5IFA H 1 216 PDB 5IFA 5IFA 1 216 DBREF 5IFA L 1 214 PDB 5IFA 5IFA 1 214 SEQRES 1 H 221 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 221 TYR THR PHE THR GLY TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 221 PRO ASN SER GLY GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 221 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 221 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA LYS ILE SER GLY SER TYR SER SEQRES 9 H 221 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 221 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 221 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 221 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 221 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 221 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 216 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 216 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 216 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 216 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 216 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 216 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 216 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 216 TYR TYR CYS GLN GLN TYR TYR SER PHE GLY GLY GLY THR SEQRES 9 L 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU ARG SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET 1PE H 304 4 HET 1PE H 305 4 HET 1PE H 306 4 HET 1PE H 307 10 HET GOL H 308 6 HET GOL H 309 6 HET GOL H 310 6 HET GOL H 311 6 HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HETNAM SO4 SULFATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 1PE 4(C10 H22 O6) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 17 HOH *203(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 THR H 73 ILE H 75 5 3 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 VAL L 83 5 5 HELIX 9 AA9 SER L 121 GLY L 128 1 8 HELIX 10 AB1 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 ILE H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 ILE H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 PHE H 100A TRP H 103 -1 O TYR H 102 N LYS H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 ALA L 34 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 SER L 97 PHE L 98 -1 O SER L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 GLN L 155 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB2 4 ALA L 193 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 SER L 208 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.06 LINK CE LYS H 129 C26 1PE H 307 1555 1555 1.50 LINK C24 1PE H 307 OG SER L 77 4576 1555 1.38 CISPEP 1 PHE H 146 PRO H 147 0 -5.92 CISPEP 2 GLU H 148 PRO H 149 0 -1.36 CISPEP 3 SER L 7 PRO L 8 0 -6.01 CISPEP 4 TYR L 140 PRO L 141 0 1.36 SITE 1 AC1 3 GLU L 17 LYS L 190 ARG L 211 SITE 1 AC2 4 TYR H 33 ASN H 52 SER H 132 LYS L 207 SITE 1 AC3 6 ARG H 82B ARG H 83 GLN H 171 SER H 172 SITE 2 AC3 6 HOH H 441 GLN L 160 SITE 1 AC4 2 GLN H 105 GLY H 106 SITE 1 AC5 3 SER H 7 GLU H 10 LYS H 19 SITE 1 AC6 3 ASP H 208 LYS H 209 LYS H 210 SITE 1 AC7 7 LYS H 129 SER L 77 GLN L 79 SER L 208 SITE 2 AC7 7 PHE L 209 ASN L 210 HOH L 457 SITE 1 AC8 7 ARG H 38 GLN H 39 ALA H 40 GLN H 43 SITE 2 AC8 7 GLY H 44 GLU H 46 HOH H 428 SITE 1 AC9 8 SER H 96 SER H 98 SER H 100 ASP H 101 SITE 2 AC9 8 HOH H 401 LEU L 46 TYR L 49 GLU L 55 SITE 1 AD1 3 GLU H 148 HOH H 456 HOH H 465 SITE 1 AD2 7 THR H 160 SER H 161 GLY H 162 VAL H 163 SITE 2 AD2 7 HIS H 164 ASP L 167 LYS L 169 SITE 1 AD3 7 GLN L 37 LYS L 39 LYS L 45 PRO L 59 SITE 2 AD3 7 PHE L 62 GLU L 81 ASP L 82 SITE 1 AD4 5 ARG L 142 GLU L 143 ALA L 144 GLU L 161 SITE 2 AD4 5 LEU L 175 SITE 1 AD5 8 SER L 14 LEU L 15 GLU L 17 LYS L 188 SITE 2 AD5 8 HIS L 189 LYS L 190 ARG L 211 HOH L 401 CRYST1 79.063 124.201 47.946 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020857 0.00000