HEADER TRANSPORT PROTEIN 27-FEB-16 5IGA TITLE CRYSTAL STRUCTURE OF A MARINE METAGENOME TRAP SOLUTE BINDING PROTEIN TITLE 2 SPECIFIC FOR AROMATIC ACID LIGANDS (SORCERER II GLOBAL OCEAN SAMPLING TITLE 3 EXPEDITION, UNIDENTIFIED MICROBE, LOCUS TAG GOS_1523157, TRIPLE TITLE 4 SURFACE MUTANT K158A_K223A_K313A) IN COMPLEX WITH CO-PURIFIED TITLE 5 PARAHYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP TRANSPORTER SOLUTE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,S.L.HOGLE,C.L.DUPONT,S.C.ALMO REVDAT 4 06-NOV-24 5IGA 1 REMARK REVDAT 3 15-NOV-23 5IGA 1 REMARK REVDAT 2 27-SEP-23 5IGA 1 REMARK REVDAT 1 18-JAN-17 5IGA 0 JRNL AUTH M.W.VETTING,N.F.AL OBAIDI,S.L.HOGLE,C.L.DUPONT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A MARINE METAGENOME TRAP SOLUTE BINDING JRNL TITL 2 PROTEIN SPECIFIC FOR AROMATIC ACID LIGANDS (SORCERER II JRNL TITL 3 GLOBAL OCEAN SAMPLING EXPEDITION, UNIDENTIFIED MICROBE, JRNL TITL 4 LOCUS TAG GOS_1523157, TRIPLE SURFACE MUTANT JRNL TITL 5 K158A_K223A_K313A) IN COMPLEX WITH CO-PURIFIED JRNL TITL 6 PARAHYDROXYBENZOATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 48637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3558 - 3.7885 0.99 2695 132 0.1229 0.1518 REMARK 3 2 3.7885 - 3.0073 1.00 2617 158 0.1248 0.1452 REMARK 3 3 3.0073 - 2.6272 1.00 2648 154 0.1229 0.1455 REMARK 3 4 2.6272 - 2.3870 0.99 2608 141 0.1171 0.1189 REMARK 3 5 2.3870 - 2.2160 0.99 2589 141 0.1139 0.1256 REMARK 3 6 2.2160 - 2.0853 0.99 2608 133 0.1088 0.1442 REMARK 3 7 2.0853 - 1.9809 0.99 2600 146 0.1093 0.1224 REMARK 3 8 1.9809 - 1.8947 0.98 2581 133 0.1184 0.1677 REMARK 3 9 1.8947 - 1.8217 0.98 2602 139 0.1179 0.1347 REMARK 3 10 1.8217 - 1.7589 0.98 2569 156 0.1114 0.1547 REMARK 3 11 1.7589 - 1.7039 0.98 2550 152 0.1115 0.1351 REMARK 3 12 1.7039 - 1.6551 0.98 2590 150 0.1117 0.1389 REMARK 3 13 1.6551 - 1.6116 0.98 2607 131 0.1170 0.1443 REMARK 3 14 1.6116 - 1.5723 0.97 2529 159 0.1183 0.1322 REMARK 3 15 1.5723 - 1.5365 0.96 2488 128 0.1233 0.1575 REMARK 3 16 1.5365 - 1.5038 0.95 2515 135 0.1295 0.1621 REMARK 3 17 1.5038 - 1.4737 0.93 2443 128 0.1486 0.1745 REMARK 3 18 1.4737 - 1.4459 0.87 2275 107 0.1628 0.2088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2544 REMARK 3 ANGLE : 1.050 3440 REMARK 3 CHIRALITY : 0.075 381 REMARK 3 PLANARITY : 0.008 440 REMARK 3 DIHEDRAL : 17.846 940 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0964 -11.4333 3.3877 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.1083 REMARK 3 T33: 0.1391 T12: 0.0056 REMARK 3 T13: 0.0160 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.1983 L22: 0.1771 REMARK 3 L33: 0.3426 L12: -0.0351 REMARK 3 L13: -0.0905 L23: 0.0507 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0490 S13: -0.0571 REMARK 3 S21: -0.0737 S22: -0.0481 S23: -0.1122 REMARK 3 S31: 0.0152 S32: 0.0134 S33: -0.1268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5176 -13.6436 8.2195 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.1058 REMARK 3 T33: 0.1075 T12: -0.0023 REMARK 3 T13: 0.0072 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0042 L22: 0.0471 REMARK 3 L33: 0.0102 L12: -0.0352 REMARK 3 L13: -0.0254 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.0042 S13: -0.0238 REMARK 3 S21: -0.0082 S22: -0.0048 S23: 0.0260 REMARK 3 S31: 0.0306 S32: -0.0326 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1625 3.0803 15.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0616 REMARK 3 T33: 0.0551 T12: -0.0017 REMARK 3 T13: 0.0042 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.0623 L22: 0.4958 REMARK 3 L33: 0.1748 L12: -0.0605 REMARK 3 L13: -0.1575 L23: -0.0190 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.0152 S13: 0.0234 REMARK 3 S21: 0.0601 S22: 0.0227 S23: 0.0144 REMARK 3 S31: -0.0138 S32: -0.0096 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7742 4.0449 12.5665 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1376 REMARK 3 T33: 0.1447 T12: -0.0025 REMARK 3 T13: 0.0026 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.0487 L22: 0.0216 REMARK 3 L33: 0.0250 L12: -0.0374 REMARK 3 L13: -0.0302 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0175 S13: 0.0726 REMARK 3 S21: 0.0225 S22: -0.0241 S23: 0.0356 REMARK 3 S31: 0.0483 S32: -0.0600 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8724 6.7095 1.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.1102 REMARK 3 T33: 0.1044 T12: -0.0004 REMARK 3 T13: -0.0064 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0688 L22: 0.1895 REMARK 3 L33: 0.1049 L12: -0.0981 REMARK 3 L13: -0.0181 L23: -0.1871 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.0156 S13: -0.0193 REMARK 3 S21: -0.0205 S22: -0.0038 S23: 0.0141 REMARK 3 S31: 0.0016 S32: -0.0364 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2583 -13.5386 15.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.0986 REMARK 3 T33: 0.1297 T12: -0.0011 REMARK 3 T13: -0.0124 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.1313 L22: 0.1516 REMARK 3 L33: 0.3343 L12: 0.0385 REMARK 3 L13: -0.1057 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0261 S13: -0.0051 REMARK 3 S21: 0.0545 S22: -0.0671 S23: -0.0956 REMARK 3 S31: -0.0093 S32: 0.0101 S33: -0.1216 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3484 10.6383 4.1242 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.1153 REMARK 3 T33: 0.1191 T12: 0.0005 REMARK 3 T13: 0.0003 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0549 L22: 0.0725 REMARK 3 L33: 0.0986 L12: -0.0734 REMARK 3 L13: 0.0309 L23: 0.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0567 S13: 0.0750 REMARK 3 S21: 0.0127 S22: -0.0609 S23: -0.0982 REMARK 3 S31: -0.0333 S32: 0.0789 S33: -0.0049 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7182 9.6187 23.3289 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1462 REMARK 3 T33: 0.1381 T12: 0.0058 REMARK 3 T13: 0.0283 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.0455 L22: 0.0330 REMARK 3 L33: 0.0929 L12: -0.0511 REMARK 3 L13: -0.0706 L23: 0.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.0212 S13: 0.0031 REMARK 3 S21: 0.0429 S22: 0.1504 S23: 0.1560 REMARK 3 S31: -0.0652 S32: -0.1865 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5504 6.7904 27.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1428 REMARK 3 T33: 0.1253 T12: -0.0019 REMARK 3 T13: -0.0118 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.1810 L22: 0.1101 REMARK 3 L33: 0.0020 L12: -0.0312 REMARK 3 L13: -0.0154 L23: 0.0650 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: -0.2932 S13: -0.0591 REMARK 3 S21: 0.2297 S22: 0.0025 S23: -0.1228 REMARK 3 S31: -0.0044 S32: 0.1516 S33: -0.0082 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.16500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5I5P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, REMARK 280 10 MM 3-(3-HYDROXYPHENYL)PROPIONIC ACID); RESERVOIR (MCSG2 (H4) REMARK 280 0.2 M AMMONIUM ACETATE, 0.1 M TRIS PH 8.5 25 %(W/V) PEG 3350); REMARK 280 CRYOPROTECTION (20% DIETHYLENE GLYCOL, 80% RESERVOIR), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.23500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 257 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 247 O HOH A 504 1.59 REMARK 500 OE2 GLU A 303 O HOH A 501 2.03 REMARK 500 O HOH A 698 O HOH A 807 2.07 REMARK 500 O HOH A 751 O HOH A 880 2.09 REMARK 500 O HOH A 785 O HOH A 858 2.13 REMARK 500 O HOH A 526 O HOH A 625 2.15 REMARK 500 O HOH A 546 O HOH A 812 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 933 O HOH A 952 1556 2.09 REMARK 500 O HOH A 974 O HOH A 977 1556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 44 -71.18 -137.48 REMARK 500 ALA A 113 -147.47 -96.19 REMARK 500 THR A 128 -104.32 -122.76 REMARK 500 GLU A 154 -16.87 -146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 975 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 976 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 978 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PHB A 407 DBREF 5IGA A 2 342 PDB 5IGA 5IGA 2 342 SEQRES 1 A 341 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 341 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLU VAL VAL SEQRES 3 A 341 LEU LYS PHE HIS SER PHE PRO PRO MSE PRO ALA ASN SER SEQRES 4 A 341 ASN ALA LYS PHE VAL LYS PRO TRP SER GLU LYS VAL LEU SEQRES 5 A 341 ALA GLU SER ASN GLY GLU ILE LYS VAL GLU ILE TYR PRO SEQRES 6 A 341 ALA MSE GLN LEU GLY GLY LYS PRO PRO GLN LEU VAL ASP SEQRES 7 A 341 GLN VAL ARG ASP GLY VAL VAL ASP ILE VAL TRP THR VAL SEQRES 8 A 341 ALA GLY TYR THR PRO GLY ARG PHE PRO HIS LEU GLU ALA SEQRES 9 A 341 PHE GLU LEU PRO PHE MSE PRO ALA SER ALA GLU ALA THR SEQRES 10 A 341 SER GLN ALA LEU GLN GLU TYR VAL ASP THR VAL ALA ALA SEQRES 11 A 341 SER ASP LEU LYS ASP TYR LYS VAL LEU ALA VAL PHE CYS SEQRES 12 A 341 HIS ALA PRO GLY LYS ILE HIS THR LYS GLU LYS VAL ILE SEQRES 13 A 341 ALA SER ALA ALA ASP LEU ASN GLY MSE LYS MSE ARG GLY SEQRES 14 A 341 PRO THR ARG VAL ILE THR LYS MSE LEU GLU GLY LEU GLY SEQRES 15 A 341 ALA THR PRO VAL GLY MSE PRO VAL PRO ALA VAL ALA GLY SEQRES 16 A 341 ALA LEU SER LYS GLY VAL ILE ASP GLY MSE VAL VAL PRO SEQRES 17 A 341 TRP GLU ILE MSE PRO SER PHE LYS LEU HIS GLU LEU THR SEQRES 18 A 341 ALA ALA HIS THR THR VAL SER GLY SER ARG GLY LEU TYR SEQRES 19 A 341 THR THR PRO PHE LEU PHE LEU MSE ASN LYS ALA LYS TYR SEQRES 20 A 341 GLU SER LEU SER ASP GLU HIS LYS LYS VAL ILE ASP ASN SEQRES 21 A 341 ASN ALA GLY LEU ALA LEU ALA LYS LEU ALA GLY GLN LEU SEQRES 22 A 341 TRP ASP GLY PHE GLU VAL PRO ALA ARG LYS LEU ALA LEU SEQRES 23 A 341 ASP ALA GLY GLY THR ILE HIS SER LEU SER GLY GLY PRO SEQRES 24 A 341 LEU ALA GLU MSE LYS ALA ALA GLY GLU GLY LEU GLU ALA SEQRES 25 A 341 ASP TRP ILE LYS SER ALA ASN ASP ARG GLY LEU ASP GLY SEQRES 26 A 341 ALA MSE LEU VAL LYS THR ALA LYS ASP LEU ILE SER LYS SEQRES 27 A 341 TYR ASP LYS HET MSE A 24 17 HET MSE A 36 34 HET MSE A 68 16 HET MSE A 111 17 HET MSE A 166 16 HET MSE A 168 17 HET MSE A 178 17 HET MSE A 189 17 HET MSE A 206 10 HET MSE A 213 17 HET MSE A 243 17 HET MSE A 304 17 HET MSE A 328 10 HET PEG A 401 17 HET PEG A 402 17 HET PEG A 403 17 HET PEG A 404 17 HET PEG A 405 7 HET TRS A 406 20 HET PHB A 407 15 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PHB P-HYDROXYBENZOIC ACID HETSYN TRS TRIS BUFFER FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 PEG 5(C4 H10 O3) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 PHB C7 H6 O3 FORMUL 9 HOH *478(H2 O) HELIX 1 AA1 ALA A 38 LYS A 43 1 6 HELIX 2 AA2 PHE A 44 SER A 56 1 13 HELIX 3 AA3 LYS A 73 PRO A 75 5 3 HELIX 4 AA4 GLN A 76 ASP A 83 1 8 HELIX 5 AA5 GLY A 94 THR A 96 5 3 HELIX 6 AA6 PHE A 100 LEU A 108 5 9 HELIX 7 AA7 SER A 114 THR A 128 1 15 HELIX 8 AA8 ALA A 130 LYS A 135 5 6 HELIX 9 AA9 SER A 159 ASN A 164 5 6 HELIX 10 AB1 THR A 172 LEU A 182 1 11 HELIX 11 AB2 PRO A 190 PRO A 192 5 3 HELIX 12 AB3 ALA A 193 LYS A 200 1 8 HELIX 13 AB4 PRO A 209 PHE A 216 5 8 HELIX 14 AB5 LYS A 217 THR A 222 1 6 HELIX 15 AB6 LYS A 245 LEU A 251 1 7 HELIX 16 AB7 SER A 252 ASN A 262 1 11 HELIX 17 AB8 GLY A 264 ALA A 289 1 26 HELIX 18 AB9 SER A 297 ARG A 322 1 26 HELIX 19 AC1 ASP A 325 ASP A 341 1 17 SHEET 1 AA1 5 ILE A 60 TYR A 65 0 SHEET 2 AA1 5 VAL A 26 HIS A 31 1 N PHE A 30 O GLU A 63 SHEET 3 AA1 5 ILE A 88 VAL A 92 1 O ILE A 88 N HIS A 31 SHEET 4 AA1 5 PRO A 238 ASN A 244 -1 O LEU A 240 N THR A 91 SHEET 5 AA1 5 TYR A 137 CYS A 144 -1 N PHE A 143 O PHE A 239 SHEET 1 AA2 6 THR A 185 GLY A 188 0 SHEET 2 AA2 6 LYS A 167 GLY A 170 1 N GLY A 170 O VAL A 187 SHEET 3 AA2 6 GLY A 205 VAL A 208 1 O GLY A 205 N ARG A 169 SHEET 4 AA2 6 LYS A 149 THR A 152 -1 N HIS A 151 O MSE A 206 SHEET 5 AA2 6 ALA A 224 VAL A 228 -1 O THR A 226 N ILE A 150 SHEET 6 AA2 6 THR A 292 LEU A 296 1 O LEU A 296 N THR A 227 LINK C SER A 23 N MSE A 24 1555 1555 1.33 LINK C MSE A 24 N GLU A 25 1555 1555 1.33 LINK C PRO A 35 N AMSE A 36 1555 1555 1.32 LINK C PRO A 35 N BMSE A 36 1555 1555 1.33 LINK C AMSE A 36 N PRO A 37 1555 1555 1.34 LINK C BMSE A 36 N PRO A 37 1555 1555 1.34 LINK C ALA A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N GLN A 69 1555 1555 1.33 LINK C PHE A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N PRO A 112 1555 1555 1.34 LINK C GLY A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N LYS A 167 1555 1555 1.33 LINK C LYS A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N ARG A 169 1555 1555 1.33 LINK C ALYS A 177 N MSE A 178 1555 1555 1.33 LINK C BLYS A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N LEU A 179 1555 1555 1.34 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N PRO A 190 1555 1555 1.33 LINK C GLY A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N VAL A 207 1555 1555 1.33 LINK C ILE A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N PRO A 214 1555 1555 1.34 LINK C LEU A 242 N MSE A 243 1555 1555 1.32 LINK C MSE A 243 N ASN A 244 1555 1555 1.33 LINK C GLU A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N LYS A 305 1555 1555 1.34 LINK C ALA A 327 N MSE A 328 1555 1555 1.33 LINK C MSE A 328 N LEU A 329 1555 1555 1.33 SITE 1 AC1 6 GLU A 50 ALA A 54 VAL A 202 HOH A 533 SITE 2 AC1 6 HOH A 569 HOH A 613 SITE 1 AC2 7 PHE A 44 TRP A 48 LYS A 51 VAL A 187 SITE 2 AC2 7 LEU A 274 HOH A 524 HOH A 589 SITE 1 AC3 8 PRO A 171 ARG A 173 MSE A 189 PRO A 190 SITE 2 AC3 8 ASN A 261 PEG A 404 HOH A 552 HOH A 756 SITE 1 AC4 9 ARG A 173 THR A 176 LYS A 177 GLU A 180 SITE 2 AC4 9 PRO A 186 GLY A 188 PEG A 403 HOH A 654 SITE 3 AC4 9 HOH A 694 SITE 1 AC5 7 SER A 114 PRO A 147 VAL A 228 GLY A 230 SITE 2 AC5 7 ARG A 232 GLY A 233 HOH A 529 SITE 1 AC6 5 GLN A 69 HOH A 643 HOH A 677 HOH A 714 SITE 2 AC6 5 HOH A 728 SITE 1 AC7 10 TRP A 90 TYR A 95 ARG A 169 PRO A 171 SITE 2 AC7 10 VAL A 191 VAL A 208 GLU A 211 ILE A 212 SITE 3 AC7 10 HOH A 585 HOH A 630 CRYST1 39.830 84.470 46.069 90.00 113.22 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025107 0.000000 0.010771 0.00000 SCALE2 0.000000 0.011839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023620 0.00000