HEADER TRANSFERASE/ANTIBIOTIC 28-FEB-16 5IGP TITLE MACROLIDE 2'-PHOSPHOTRANSFERASE TYPE I - COMPLEX WITH GDP AND TITLE 2 ERYTHROMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROLIDE 2'-PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MACROLIDE 2'-PHOSPHOTRANSFERASE I,MACROLIDE 2'- COMPND 5 PHOSPHOTRANSFERASE I MPH(A),MACROLIDE 2'-PHOSPHOTRANSFERASE MPH(A), COMPND 6 MACROLIDE 2-PHOSPHOTRANSFERASE,MACROLIDE 2-PHOSPHOTRANSFERASE COMPND 7 PROTEIN,MACROLIDE RESISTANCE PROTEIN,MACROLIDE-PHOSPHOTRANSFERASE, COMPND 8 MPH(A),MPH(A),MPH(A) MACROLIDE 2'-PHOSPHOTRANSFERASE I, COMPND 9 UNCHARACTERIZED PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: TF481A; SOURCE 5 GENE: MPHA, MPH(A), MPH2, AM267_25240, AM268_24740, AN205_25580, SOURCE 6 AN669_16770, ASU34_20250, AZ95_0038, ECONIH1_26770, ERS085366_04054, SOURCE 7 ERS085367_04848, ERS139269_04809, ERS150873_04753, ETN48_P0083, SOURCE 8 ORF00017, PCTXM123_C0996_11, PKC394-009, SK74_04859, SK86_03516, SOURCE 9 UN86_19875; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS MACROLIDE PHOSPHOTRANSFERASE, KINASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BERGHUIS,D.H.FONG REVDAT 6 27-SEP-23 5IGP 1 REMARK REVDAT 5 08-JAN-20 5IGP 1 REMARK REVDAT 4 13-SEP-17 5IGP 1 REMARK REVDAT 3 17-MAY-17 5IGP 1 JRNL REVDAT 2 03-MAY-17 5IGP 1 JRNL REVDAT 1 26-APR-17 5IGP 0 JRNL AUTH D.H.FONG,D.L.BURK,J.BLANCHET,A.Y.YAN,A.M.BERGHUIS JRNL TITL STRUCTURAL BASIS FOR KINASE-MEDIATED MACROLIDE ANTIBIOTIC JRNL TITL 2 RESISTANCE. JRNL REF STRUCTURE V. 25 750 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28416110 JRNL DOI 10.1016/J.STR.2017.03.007 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1886 - 3.8550 1.00 2983 155 0.1763 0.1779 REMARK 3 2 3.8550 - 3.0602 1.00 2802 149 0.1457 0.1876 REMARK 3 3 3.0602 - 2.6734 1.00 2763 145 0.1612 0.1658 REMARK 3 4 2.6734 - 2.4290 1.00 2709 144 0.1494 0.1666 REMARK 3 5 2.4290 - 2.2549 1.00 2711 142 0.1399 0.1706 REMARK 3 6 2.2549 - 2.1220 1.00 2732 140 0.1399 0.1551 REMARK 3 7 2.1220 - 2.0157 1.00 2704 138 0.1449 0.1645 REMARK 3 8 2.0157 - 1.9280 1.00 2692 144 0.1564 0.1857 REMARK 3 9 1.9280 - 1.8538 1.00 2670 142 0.1589 0.1894 REMARK 3 10 1.8538 - 1.7898 1.00 2656 136 0.1658 0.1984 REMARK 3 11 1.7898 - 1.7338 1.00 2647 142 0.1777 0.2181 REMARK 3 12 1.7338 - 1.6843 1.00 2694 140 0.1860 0.2264 REMARK 3 13 1.6843 - 1.6399 1.00 2678 137 0.2051 0.2688 REMARK 3 14 1.6399 - 1.5999 0.99 2586 138 0.2416 0.2734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2532 REMARK 3 ANGLE : 1.318 3480 REMARK 3 CHIRALITY : 0.071 403 REMARK 3 PLANARITY : 0.007 440 REMARK 3 DIHEDRAL : 12.806 892 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:27) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8222 57.4053 285.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.1978 REMARK 3 T33: 0.2175 T12: -0.0095 REMARK 3 T13: -0.0084 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.3272 L22: 0.6178 REMARK 3 L33: 1.3336 L12: -0.5992 REMARK 3 L13: 0.6218 L23: -0.7800 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: -0.2052 S13: 0.2859 REMARK 3 S21: 0.1679 S22: -0.0696 S23: -0.1623 REMARK 3 S31: -0.7180 S32: 0.0976 S33: 0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 28:61) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8799 49.6767 277.7957 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.2541 REMARK 3 T33: 0.1456 T12: 0.0243 REMARK 3 T13: 0.0108 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2742 L22: 1.8136 REMARK 3 L33: 2.9710 L12: 0.4880 REMARK 3 L13: -0.9791 L23: -0.8300 REMARK 3 S TENSOR REMARK 3 S11: -0.2398 S12: -0.1278 S13: -0.1413 REMARK 3 S21: -0.0241 S22: 0.0945 S23: -0.2549 REMARK 3 S31: 0.0678 S32: 0.3123 S33: 0.0583 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 62:103) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7095 44.2888 270.2201 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.1357 REMARK 3 T33: 0.0854 T12: -0.0053 REMARK 3 T13: -0.0072 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.4168 L22: 1.4821 REMARK 3 L33: 1.1219 L12: 0.1091 REMARK 3 L13: 0.1426 L23: 0.3918 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.0350 S13: 0.0211 REMARK 3 S21: -0.0557 S22: 0.0485 S23: 0.0446 REMARK 3 S31: -0.1630 S32: -0.0646 S33: 0.0069 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 104:180) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5291 31.6382 262.8935 REMARK 3 T TENSOR REMARK 3 T11: 0.0466 T22: 0.0896 REMARK 3 T33: 0.0821 T12: -0.0355 REMARK 3 T13: -0.0208 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.7178 L22: 0.5233 REMARK 3 L33: 0.7560 L12: -0.1773 REMARK 3 L13: 0.2321 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.0259 S12: 0.0382 S13: -0.0360 REMARK 3 S21: 0.0243 S22: -0.0301 S23: -0.0755 REMARK 3 S31: 0.0271 S32: 0.0816 S33: 0.0195 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 181:244) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8419 29.4070 263.9422 REMARK 3 T TENSOR REMARK 3 T11: 0.0203 T22: 0.1323 REMARK 3 T33: 0.0682 T12: -0.0361 REMARK 3 T13: -0.0272 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.8891 L22: 0.9395 REMARK 3 L33: 0.8377 L12: -0.0569 REMARK 3 L13: -0.2047 L23: 0.2324 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0802 S13: -0.1361 REMARK 3 S21: 0.0168 S22: 0.0209 S23: 0.0221 REMARK 3 S31: 0.1147 S32: 0.0375 S33: 0.0038 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 245:301) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5858 28.6639 262.9563 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.1503 REMARK 3 T33: 0.1034 T12: -0.0423 REMARK 3 T13: -0.0202 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.7300 L22: 0.8362 REMARK 3 L33: 0.2871 L12: 0.4668 REMARK 3 L13: -0.3429 L23: -0.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: -0.1771 S13: -0.1261 REMARK 3 S21: 0.0165 S22: -0.0882 S23: -0.0437 REMARK 3 S31: 0.0531 S32: 0.0403 S33: -0.0207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 5, 2012 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.175 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CITRATE, 27% PEG 4000, 18% REMARK 280 ISOPROPANOL, PH 6.2, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.35000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.35000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 164.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 78.18477 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 576.45000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 135 HH TYR A 251 1.27 REMARK 500 HZ3 LYS A 74 O HOH A 504 1.35 REMARK 500 O HOH A 608 O HOH A 716 1.56 REMARK 500 HH22 ARG A 165 OD1 ASP A 283 1.59 REMARK 500 O HOH A 669 O HOH A 741 1.71 REMARK 500 O HOH A 733 O HOH A 771 1.82 REMARK 500 O HOH A 726 O HOH A 746 1.83 REMARK 500 O HOH A 712 O HOH A 777 1.85 REMARK 500 O HOH A 698 O HOH A 737 1.86 REMARK 500 O HOH A 709 O HOH A 750 1.93 REMARK 500 O HOH A 726 O HOH A 758 1.97 REMARK 500 OE2 GLU A 98 O HOH A 501 2.04 REMARK 500 NZ LYS A 74 O HOH A 502 2.04 REMARK 500 NH2 ARG A 37 O HOH A 503 2.06 REMARK 500 NZ LYS A 74 O HOH A 504 2.10 REMARK 500 O ALA A 7 O HOH A 505 2.14 REMARK 500 O HOH A 592 O HOH A 594 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 736 4557 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 78 32.26 -84.46 REMARK 500 ASP A 200 50.43 -144.19 REMARK 500 GLU A 212 17.42 83.41 REMARK 500 ASP A 219 67.19 66.17 REMARK 500 ASP A 219 80.03 48.01 REMARK 500 ASP A 226 -167.02 -168.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ERY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IGH RELATED DB: PDB REMARK 900 RELATED ID: 5IGI RELATED DB: PDB REMARK 900 RELATED ID: 5IGJ RELATED DB: PDB REMARK 900 RELATED ID: 5IGR RELATED DB: PDB REMARK 900 RELATED ID: 5IGS RELATED DB: PDB REMARK 900 RELATED ID: 5IGT RELATED DB: PDB REMARK 900 RELATED ID: 5IGU RELATED DB: PDB REMARK 900 RELATED ID: 5IGV RELATED DB: PDB REMARK 900 RELATED ID: 5IGW RELATED DB: PDB REMARK 900 RELATED ID: 5IGY RELATED DB: PDB REMARK 900 RELATED ID: 5IGZ RELATED DB: PDB REMARK 900 RELATED ID: 5IH0 RELATED DB: PDB REMARK 900 RELATED ID: 5IH1 RELATED DB: PDB DBREF 5IGP A 1 301 UNP Q47396 Q47396_ECOLX 1 301 SEQRES 1 A 301 MET THR VAL VAL THR THR ALA ASP THR SER GLN LEU TYR SEQRES 2 A 301 ALA LEU ALA ALA ARG HIS GLY LEU LYS LEU HIS GLY PRO SEQRES 3 A 301 LEU THR VAL ASN GLU LEU GLY LEU ASP TYR ARG ILE VAL SEQRES 4 A 301 ILE ALA THR VAL ASP ASP GLY ARG ARG TRP VAL LEU ARG SEQRES 5 A 301 ILE PRO ARG ARG ALA GLU VAL SER ALA LYS VAL GLU PRO SEQRES 6 A 301 GLU ALA ARG VAL LEU ALA MET LEU LYS ASN ARG LEU PRO SEQRES 7 A 301 PHE ALA VAL PRO ASP TRP ARG VAL ALA ASN ALA GLU LEU SEQRES 8 A 301 VAL ALA TYR PRO MET LEU GLU ASP SER THR ALA MET VAL SEQRES 9 A 301 ILE GLN PRO GLY SER SER THR PRO ASP TRP VAL VAL PRO SEQRES 10 A 301 GLN ASP SER GLU VAL PHE ALA GLU SER PHE ALA THR ALA SEQRES 11 A 301 LEU ALA ALA LEU HIS ALA VAL PRO ILE SER ALA ALA VAL SEQRES 12 A 301 ASP ALA GLY MET LEU ILE ARG THR PRO THR GLN ALA ARG SEQRES 13 A 301 GLN LYS VAL ALA ASP ASP VAL ASP ARG VAL ARG ARG GLU SEQRES 14 A 301 PHE VAL VAL ASN ASP LYS ARG LEU HIS ARG TRP GLN ARG SEQRES 15 A 301 TRP LEU ASP ASP ASP SER SER TRP PRO ASP PHE SER VAL SEQRES 16 A 301 VAL VAL HIS GLY ASP LEU TYR VAL GLY HIS VAL LEU ILE SEQRES 17 A 301 ASP ASN THR GLU ARG VAL SER GLY MET ILE ASP TRP SER SEQRES 18 A 301 GLU ALA ARG VAL ASP ASP PRO ALA ILE ASP MET ALA ALA SEQRES 19 A 301 HIS LEU MET VAL PHE GLY GLU GLU GLY LEU ALA LYS LEU SEQRES 20 A 301 LEU LEU THR TYR GLU ALA ALA GLY GLY ARG VAL TRP PRO SEQRES 21 A 301 ARG LEU ALA HIS HIS ILE ALA GLU ARG LEU ALA PHE GLY SEQRES 22 A 301 ALA VAL THR TYR ALA LEU PHE ALA LEU ASP SER GLY ASN SEQRES 23 A 301 GLU GLU TYR LEU ALA ALA ALA LYS ALA GLN LEU ALA ALA SEQRES 24 A 301 ALA GLU HET GDP A 401 38 HET ERY A 402 118 HET IPA A 403 12 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ERY ERYTHROMYCIN A HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 ERY C37 H67 N O13 FORMUL 4 IPA C3 H8 O FORMUL 5 HOH *287(H2 O) HELIX 1 AA1 ASP A 8 ARG A 18 1 11 HELIX 2 AA2 ARG A 56 ALA A 61 1 6 HELIX 3 AA3 LYS A 62 LYS A 74 1 13 HELIX 4 AA4 ASN A 75 LEU A 77 5 3 HELIX 5 AA5 SER A 120 ALA A 136 1 17 HELIX 6 AA6 PRO A 138 ALA A 145 1 8 HELIX 7 AA7 THR A 151 PHE A 170 1 20 HELIX 8 AA8 ASN A 173 ASP A 185 1 13 HELIX 9 AA9 ASP A 186 TRP A 190 5 5 HELIX 10 AB1 TYR A 202 GLY A 204 5 3 HELIX 11 AB2 ASP A 227 ASP A 231 5 5 HELIX 12 AB3 MET A 232 ALA A 254 1 23 HELIX 13 AB4 ARG A 261 GLY A 285 1 25 HELIX 14 AB5 ASN A 286 ALA A 299 1 14 SHEET 1 AA1 5 LEU A 23 ASN A 30 0 SHEET 2 AA1 5 TYR A 36 VAL A 43 -1 O ILE A 38 N ASN A 30 SHEET 3 AA1 5 ARG A 48 PRO A 54 -1 O LEU A 51 N VAL A 39 SHEET 4 AA1 5 LEU A 91 PRO A 95 -1 O TYR A 94 N VAL A 50 SHEET 5 AA1 5 VAL A 86 ASN A 88 -1 N VAL A 86 O ALA A 93 SHEET 1 AA2 3 SER A 100 THR A 101 0 SHEET 2 AA2 3 VAL A 206 ILE A 208 -1 O ILE A 208 N SER A 100 SHEET 3 AA2 3 VAL A 214 MET A 217 -1 O SER A 215 N LEU A 207 SHEET 1 AA3 2 MET A 103 VAL A 104 0 SHEET 2 AA3 2 TRP A 114 VAL A 115 -1 O TRP A 114 N VAL A 104 SHEET 1 AA4 2 VAL A 195 VAL A 197 0 SHEET 2 AA4 2 ARG A 224 ASP A 226 -1 O ARG A 224 N VAL A 197 SITE 1 AC1 15 ILE A 38 VAL A 50 ARG A 52 TYR A 94 SITE 2 AC1 15 MET A 96 LEU A 97 ASP A 99 HIS A 205 SITE 3 AC1 15 ILE A 218 ASP A 219 HOH A 509 HOH A 547 SITE 4 AC1 15 HOH A 552 HOH A 556 HOH A 688 SITE 1 AC2 8 MET A 103 ASP A 200 TYR A 202 HOH A 557 SITE 2 AC2 8 HOH A 579 HOH A 583 HOH A 615 HOH A 685 SITE 1 AC3 5 SER A 140 ILE A 149 THR A 151 PRO A 152 SITE 2 AC3 5 HOH A 591 CRYST1 45.140 45.140 247.050 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022153 0.012790 0.000000 0.00000 SCALE2 0.000000 0.025580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004048 0.00000