HEADER TRANSFERASE 29-FEB-16 5IH4 TITLE HUMAN CASEIN KINASE 1 ISOFORM DELTA APO (KINASE DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM DELTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CKID,TAU-PROTEIN KINASE CSNK1D; COMPND 5 EC: 2.7.11.1,2.7.11.26; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL CLONING ARTIFACT: GP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK1D, HCKID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL (K+); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19 KEYWDS KINASE DOMAIN, STEM CELL REPROGRAMMING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.URSU,D.J.ILLICH,Y.TAKEMOTO,A.T.PORFETYE,M.ZHANG,A.BROCKMEYER, AUTHOR 2 P.JANNING,N.WATANABE,H.OSADA,I.R.VETTER,S.ZIEGLER,H.R.SCHOELER, AUTHOR 3 H.WALDMANN REVDAT 4 10-JAN-24 5IH4 1 LINK REVDAT 3 04-MAY-16 5IH4 1 JRNL REVDAT 2 20-APR-16 5IH4 1 JRNL REVDAT 1 13-APR-16 5IH4 0 JRNL AUTH A.URSU,D.J.ILLICH,Y.TAKEMOTO,A.T.PORFETYE,M.ZHANG, JRNL AUTH 2 A.BROCKMEYER,P.JANNING,N.WATANABE,H.OSADA,I.R.VETTER, JRNL AUTH 3 S.ZIEGLER,H.R.SCHOLER,H.WALDMANN JRNL TITL EPIBLASTIN A INDUCES REPROGRAMMING OF EPIBLAST STEM CELLS JRNL TITL 2 INTO EMBRYONIC STEM CELLS BY INHIBITION OF CASEIN KINASE 1. JRNL REF CELL CHEM BIOL V. 23 494 2016 JRNL REFN ESSN 2451-9456 JRNL PMID 27049670 JRNL DOI 10.1016/J.CHEMBIOL.2016.02.015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 27925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.6140 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.6220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.89000 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2328 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3282 ; 2.061 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5351 ; 1.140 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 6.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;36.439 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;16.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2726 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1152 ; 3.413 ; 3.436 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1151 ; 3.408 ; 3.431 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1438 ; 5.104 ; 5.129 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5IH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29688 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 16.70 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UYS REMARK 200 REMARK 200 REMARK: ELLIPSOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LI2SO4, 0.7 - 0.8 M NA-K REMARK 280 TARTRATE, 0.1 M CHES (PH 9.5), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.96033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.92067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.92067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.96033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 217 REMARK 465 ALA A 218 REMARK 465 ALA A 219 REMARK 465 THR A 220 REMARK 465 LYS A 221 REMARK 465 ARG A 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 8 OD2 ASP A 28 1.58 REMARK 500 OD1 ASN A 143 O HOH A 401 2.07 REMARK 500 O HOH A 594 O HOH A 638 2.08 REMARK 500 O HOH A 472 O HOH A 624 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 595 O HOH A 595 4465 1.06 REMARK 500 O HOH A 414 O HOH A 414 4465 1.69 REMARK 500 O HOH A 632 O HOH A 632 6555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 123 18.78 82.90 REMARK 500 ARG A 127 -4.33 75.25 REMARK 500 ASP A 149 92.89 74.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 7.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 50 ND1 REMARK 620 2 CYS A 71 SG 116.2 REMARK 620 3 HIS A 278 NE2 82.7 47.0 REMARK 620 4 SRT A 302 O11 102.1 123.8 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SRT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 DBREF 5IH4 A 1 294 UNP P48730 KC1D_HUMAN 1 294 SEQRES 1 A 294 MET GLU LEU ARG VAL GLY ASN ARG TYR ARG LEU GLY ARG SEQRES 2 A 294 LYS ILE GLY SER GLY SER PHE GLY ASP ILE TYR LEU GLY SEQRES 3 A 294 THR ASP ILE ALA ALA GLY GLU GLU VAL ALA ILE LYS LEU SEQRES 4 A 294 GLU CYS VAL LYS THR LYS HIS PRO GLN LEU HIS ILE GLU SEQRES 5 A 294 SER LYS ILE TYR LYS MET MET GLN GLY GLY VAL GLY ILE SEQRES 6 A 294 PRO THR ILE ARG TRP CYS GLY ALA GLU GLY ASP TYR ASN SEQRES 7 A 294 VAL MET VAL MET GLU LEU LEU GLY PRO SER LEU GLU ASP SEQRES 8 A 294 LEU PHE ASN PHE CYS SER ARG LYS PHE SER LEU LYS THR SEQRES 9 A 294 VAL LEU LEU LEU ALA ASP GLN MET ILE SER ARG ILE GLU SEQRES 10 A 294 TYR ILE HIS SER LYS ASN PHE ILE HIS ARG ASP VAL LYS SEQRES 11 A 294 PRO ASP ASN PHE LEU MET GLY LEU GLY LYS LYS GLY ASN SEQRES 12 A 294 LEU VAL TYR ILE ILE ASP PHE GLY LEU ALA LYS LYS TYR SEQRES 13 A 294 ARG ASP ALA ARG THR HIS GLN HIS ILE PRO TYR ARG GLU SEQRES 14 A 294 ASN LYS ASN LEU THR GLY THR ALA ARG TYR ALA SER ILE SEQRES 15 A 294 ASN THR HIS LEU GLY ILE GLU GLN SER ARG ARG ASP ASP SEQRES 16 A 294 LEU GLU SER LEU GLY TYR VAL LEU MET TYR PHE ASN LEU SEQRES 17 A 294 GLY SER LEU PRO TRP GLN GLY LEU LYS ALA ALA THR LYS SEQRES 18 A 294 ARG GLN LYS TYR GLU ARG ILE SER GLU LYS LYS MET SER SEQRES 19 A 294 THR PRO ILE GLU VAL LEU CYS LYS GLY TYR PRO SER GLU SEQRES 20 A 294 PHE ALA THR TYR LEU ASN PHE CYS ARG SER LEU ARG PHE SEQRES 21 A 294 ASP ASP LYS PRO ASP TYR SER TYR LEU ARG GLN LEU PHE SEQRES 22 A 294 ARG ASN LEU PHE HIS ARG GLN GLY PHE SER TYR ASP TYR SEQRES 23 A 294 VAL PHE ASP TRP ASN MET LEU LYS HET ZN A 301 1 HET SRT A 302 10 HET SO4 A 303 5 HET SO4 A 304 5 HETNAM ZN ZINC ION HETNAM SRT S,R MESO-TARTARIC ACID HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SRT C4 H6 O6 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *257(H2 O) HELIX 1 AA1 GLN A 48 MET A 59 1 12 HELIX 2 AA2 SER A 88 CYS A 96 1 9 HELIX 3 AA3 SER A 101 LYS A 122 1 22 HELIX 4 AA4 LYS A 130 ASP A 132 5 3 HELIX 5 AA5 LEU A 138 GLY A 142 5 5 HELIX 6 AA6 THR A 176 ALA A 180 5 5 HELIX 7 AA7 SER A 181 LEU A 186 1 6 HELIX 8 AA8 SER A 191 GLY A 209 1 19 HELIX 9 AA9 LYS A 224 THR A 235 1 12 HELIX 10 AB1 PRO A 236 LYS A 242 1 7 HELIX 11 AB2 SER A 246 LEU A 258 1 13 HELIX 12 AB3 ASP A 265 GLY A 281 1 17 SHEET 1 AA1 6 ARG A 4 VAL A 5 0 SHEET 2 AA1 6 TYR A 9 SER A 17 -1 O TYR A 9 N VAL A 5 SHEET 3 AA1 6 ASP A 22 ASP A 28 -1 O ILE A 23 N ILE A 15 SHEET 4 AA1 6 GLU A 33 CYS A 41 -1 O ILE A 37 N TYR A 24 SHEET 5 AA1 6 TYR A 77 MET A 82 -1 O ASN A 78 N GLU A 40 SHEET 6 AA1 6 ILE A 68 GLU A 74 -1 N GLU A 74 O TYR A 77 SHEET 1 AA2 2 PHE A 124 ILE A 125 0 SHEET 2 AA2 2 LYS A 154 LYS A 155 -1 O LYS A 154 N ILE A 125 SHEET 1 AA3 2 PHE A 134 MET A 136 0 SHEET 2 AA3 2 VAL A 145 ILE A 147 -1 O TYR A 146 N LEU A 135 LINK ND1 HIS A 50 ZN ZN A 301 1555 1555 2.11 LINK SG CYS A 71 ZN ZN A 301 1555 1555 2.19 LINK NE2 HIS A 278 ZN ZN A 301 1555 2565 2.14 LINK ZN ZN A 301 O11 SRT A 302 1555 1555 2.20 SITE 1 AC1 4 HIS A 50 CYS A 71 HIS A 278 SRT A 302 SITE 1 AC2 12 HIS A 50 LYS A 57 CYS A 71 ARG A 259 SITE 2 AC2 12 HIS A 278 ARG A 279 ZN A 301 HOH A 475 SITE 3 AC2 12 HOH A 508 HOH A 524 HOH A 547 HOH A 552 SITE 1 AC3 4 ARG A 127 LYS A 154 LYS A 171 GLU A 189 SITE 1 AC4 6 ARG A 178 GLN A 214 GLY A 215 LYS A 224 SITE 2 AC4 6 HOH A 421 HOH A 541 CRYST1 64.999 64.999 152.881 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015385 0.008882 0.000000 0.00000 SCALE2 0.000000 0.017765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006541 0.00000