HEADER HYDROLASE 01-MAR-16 5IHY TITLE THE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS SEMET-YPGQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYROPHOSPHOHYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BIS30_00575; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HD DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.JEON,W.S.SONG,S.I.YOON REVDAT 3 20-NOV-24 5IHY 1 JRNL REMARK REVDAT 2 15-JUN-16 5IHY 1 JRNL REVDAT 1 27-APR-16 5IHY 0 JRNL AUTH Y.J.JEON,S.C.PARK,W.S.SONG,O.H.KIM,B.C.OH,S.I.YOON JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF BACTERIAL JRNL TITL 2 YPGQ PROTEIN REVEALS A METAL-DEPENDENT NUCLEOTIDE JRNL TITL 3 PYROPHOSPHOHYDROLASE JRNL REF J.STRUCT.BIOL. V. 195 113 2016 JRNL REFN ESSN 1095-8657 JRNL PMID 27062940 JRNL DOI 10.1016/J.JSB.2016.04.002 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2979 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.764 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3050 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4130 ; 0.999 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 4.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;36.047 ;24.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;15.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2284 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1892 ; 0.320 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3030 ; 0.642 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1158 ; 1.062 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 1.823 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 19 5 REMARK 3 1 B 2 B 18 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 68 ; 0.180 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 69 ; 0.470 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 68 ; 0.590 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 69 ; 0.580 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 66 5 REMARK 3 1 B 26 B 66 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 164 ; 0.240 ; 0.500 REMARK 3 LOOSE POSITIONAL 2 A (A): 157 ; 0.440 ; 5.000 REMARK 3 MEDIUM THERMAL 2 A (A**2): 164 ; 0.220 ; 2.000 REMARK 3 LOOSE THERMAL 2 A (A**2): 157 ; 0.330 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 67 A 101 5 REMARK 3 1 B 67 B 105 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 138 ; 0.170 ; 0.500 REMARK 3 LOOSE POSITIONAL 3 A (A): 104 ; 0.310 ; 5.000 REMARK 3 MEDIUM THERMAL 3 A (A**2): 138 ; 0.390 ; 2.000 REMARK 3 LOOSE THERMAL 3 A (A**2): 104 ; 0.510 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 112 A 146 5 REMARK 3 1 B 106 B 146 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 139 ; 0.170 ; 0.500 REMARK 3 LOOSE POSITIONAL 4 A (A): 108 ; 0.530 ; 5.000 REMARK 3 MEDIUM THERMAL 4 A (A**2): 139 ; 0.230 ; 2.000 REMARK 3 LOOSE THERMAL 4 A (A**2): 108 ; 0.340 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 147 A 201 5 REMARK 3 1 B 147 B 201 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 A (A): 220 ; 0.210 ; 0.500 REMARK 3 LOOSE POSITIONAL 5 A (A): 234 ; 0.610 ; 5.000 REMARK 3 MEDIUM THERMAL 5 A (A**2): 220 ; 0.200 ; 2.000 REMARK 3 LOOSE THERMAL 5 A (A**2): 234 ; 0.350 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1530 -7.3540 10.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.1015 REMARK 3 T33: 0.0390 T12: 0.0086 REMARK 3 T13: 0.0518 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 4.0407 L22: 0.6331 REMARK 3 L33: 1.3280 L12: -0.3140 REMARK 3 L13: 1.4830 L23: -0.7836 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: 0.2749 S13: -0.0185 REMARK 3 S21: -0.0775 S22: -0.1164 S23: 0.0039 REMARK 3 S31: 0.1310 S32: 0.1451 S33: 0.0037 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0520 -25.4570 32.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.0952 REMARK 3 T33: 0.1084 T12: -0.0216 REMARK 3 T13: 0.0521 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.8557 L22: 3.4184 REMARK 3 L33: 1.7879 L12: -1.6130 REMARK 3 L13: 0.8122 L23: -1.6305 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.1515 S13: -0.2626 REMARK 3 S21: -0.1559 S22: -0.0072 S23: 0.0594 REMARK 3 S31: 0.2535 S32: -0.0185 S33: -0.0389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q270R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14383 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 0.1 M SODIUM CITRATE, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.54350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 LYS A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 HIS A 25 REMARK 465 PHE A 102 REMARK 465 ARG A 103 REMARK 465 ASP A 104 REMARK 465 ARG A 105 REMARK 465 GLU A 106 REMARK 465 LYS A 107 REMARK 465 LEU A 108 REMARK 465 GLU A 109 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 SER A 205 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MSE B 1 REMARK 465 THR B 19 REMARK 465 GLY B 20 REMARK 465 GLU B 21 REMARK 465 SER B 22 REMARK 465 SER B 23 REMARK 465 GLY B 24 REMARK 465 HIS B 25 REMARK 465 ALA B 202 REMARK 465 LYS B 203 REMARK 465 THR B 204 REMARK 465 SER B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 THR A 19 OG1 CG2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 LYS A 99 CE NZ REMARK 470 LYS A 195 CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 THR B 68 OG1 CG2 REMARK 470 ARG B 70 NE CZ NH1 NH2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 47.04 -86.96 REMARK 500 ILE A 69 -32.14 -133.28 REMARK 500 LYS B 64 35.20 -73.69 REMARK 500 LYS B 162 -58.38 -140.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 301 DBREF1 5IHY A 1 205 UNP A0A0D5CVW2_BACIU DBREF2 5IHY A A0A0D5CVW2 1 205 DBREF1 5IHY B 1 205 UNP A0A0D5CVW2_BACIU DBREF2 5IHY B A0A0D5CVW2 1 205 SEQADV 5IHY GLY A -5 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY SER A -4 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY ALA A -3 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY LYS A -2 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY ASP A -1 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY PRO A 0 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY GLY B -5 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY SER B -4 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY ALA B -3 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY LYS B -2 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY ASP B -1 UNP A0A0D5CVW EXPRESSION TAG SEQADV 5IHY PRO B 0 UNP A0A0D5CVW EXPRESSION TAG SEQRES 1 A 211 GLY SER ALA LYS ASP PRO MSE THR GLU LEU LYS GLN ALA SEQRES 2 A 211 ASP GLN ILE ARG THR TRP VAL GLN SER VAL LEU THR GLY SEQRES 3 A 211 GLU SER SER GLY HIS ASP TRP LEU HIS ILE SER ARG VAL SEQRES 4 A 211 ALA ASP LEU ALA VAL TYR ILE GLY GLU LYS GLU ASN ALA SEQRES 5 A 211 ASP LEU PHE ILE VAL GLU THR ALA ALA LEU VAL HIS ASP SEQRES 6 A 211 LEU ILE ASP VAL LYS LEU PRO ASP THR ILE ARG LEU SER SEQRES 7 A 211 VAL SER GLU VAL TYR ASN GLN LEU VAL THR PHE GLY ILE SEQRES 8 A 211 GLY LYS GLU ASP ALA ASP ARG VAL ILE HIS ILE ILE THR SEQRES 9 A 211 LYS MSE SER PHE ARG ASP ARG GLU LYS LEU GLU GLY GLU SEQRES 10 A 211 PRO LEU SER ILE GLU GLY LYS VAL VAL GLN ASP ALA ASP SEQRES 11 A 211 ARG LEU ASP ALA ILE GLY ALA VAL GLY ILE ALA ARG ALA SEQRES 12 A 211 PHE MSE PHE ALA GLY ALA LYS GLY HIS GLY LEU TYR GLY SEQRES 13 A 211 ASP ASP GLN SER ALA TYR ALA HIS PHE PHE HIS LYS LEU SEQRES 14 A 211 LEU ARG LEU ILE ASP MSE MSE ASN THR ASP THR ALA ARG SEQRES 15 A 211 GLU LEU ALA GLU GLU ARG HIS GLU PHE MSE LEU GLN TYR SEQRES 16 A 211 ILE ARG GLN LEU GLU LYS ASP ILE PRO GLY ILE ASP ALA SEQRES 17 A 211 LYS THR SER SEQRES 1 B 211 GLY SER ALA LYS ASP PRO MSE THR GLU LEU LYS GLN ALA SEQRES 2 B 211 ASP GLN ILE ARG THR TRP VAL GLN SER VAL LEU THR GLY SEQRES 3 B 211 GLU SER SER GLY HIS ASP TRP LEU HIS ILE SER ARG VAL SEQRES 4 B 211 ALA ASP LEU ALA VAL TYR ILE GLY GLU LYS GLU ASN ALA SEQRES 5 B 211 ASP LEU PHE ILE VAL GLU THR ALA ALA LEU VAL HIS ASP SEQRES 6 B 211 LEU ILE ASP VAL LYS LEU PRO ASP THR ILE ARG LEU SER SEQRES 7 B 211 VAL SER GLU VAL TYR ASN GLN LEU VAL THR PHE GLY ILE SEQRES 8 B 211 GLY LYS GLU ASP ALA ASP ARG VAL ILE HIS ILE ILE THR SEQRES 9 B 211 LYS MSE SER PHE ARG ASP ARG GLU LYS LEU GLU GLY GLU SEQRES 10 B 211 PRO LEU SER ILE GLU GLY LYS VAL VAL GLN ASP ALA ASP SEQRES 11 B 211 ARG LEU ASP ALA ILE GLY ALA VAL GLY ILE ALA ARG ALA SEQRES 12 B 211 PHE MSE PHE ALA GLY ALA LYS GLY HIS GLY LEU TYR GLY SEQRES 13 B 211 ASP ASP GLN SER ALA TYR ALA HIS PHE PHE HIS LYS LEU SEQRES 14 B 211 LEU ARG LEU ILE ASP MSE MSE ASN THR ASP THR ALA ARG SEQRES 15 B 211 GLU LEU ALA GLU GLU ARG HIS GLU PHE MSE LEU GLN TYR SEQRES 16 B 211 ILE ARG GLN LEU GLU LYS ASP ILE PRO GLY ILE ASP ALA SEQRES 17 B 211 LYS THR SER MODRES 5IHY MSE A 1 MET MODIFIED RESIDUE MODRES 5IHY MSE A 100 MET MODIFIED RESIDUE MODRES 5IHY MSE A 139 MET MODIFIED RESIDUE MODRES 5IHY MSE A 169 MET MODIFIED RESIDUE MODRES 5IHY MSE A 170 MET MODIFIED RESIDUE MODRES 5IHY MSE A 186 MET MODIFIED RESIDUE MODRES 5IHY MSE B 100 MET MODIFIED RESIDUE MODRES 5IHY MSE B 139 MET MODIFIED RESIDUE MODRES 5IHY MSE B 169 MET MODIFIED RESIDUE MODRES 5IHY MSE B 170 MET MODIFIED RESIDUE MODRES 5IHY MSE B 186 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 100 8 HET MSE A 139 8 HET MSE A 169 8 HET MSE A 170 8 HET MSE A 186 8 HET MSE B 100 8 HET MSE B 139 8 HET MSE B 169 8 HET MSE B 170 8 HET MSE B 186 8 HET NI A 301 1 HET NI B 301 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 5 HOH *16(H2 O) HELIX 1 AA1 MSE A 1 LEU A 18 1 18 HELIX 2 AA2 TRP A 27 ASN A 45 1 19 HELIX 3 AA3 ASP A 47 HIS A 58 1 12 HELIX 4 AA4 ASP A 59 ASP A 62 5 4 HELIX 5 AA5 SER A 72 PHE A 83 1 12 HELIX 6 AA6 GLY A 86 MSE A 100 1 15 HELIX 7 AA7 SER A 114 ASP A 127 1 14 HELIX 8 AA8 ILE A 129 LYS A 144 1 16 HELIX 9 AA9 SER A 154 LYS A 162 1 9 HELIX 10 AB1 LEU A 163 MSE A 169 5 7 HELIX 11 AB2 THR A 172 ILE A 197 1 26 HELIX 12 AB3 GLU B 3 LEU B 18 1 16 HELIX 13 AB4 TRP B 27 GLU B 44 1 18 HELIX 14 AB5 ASP B 47 HIS B 58 1 12 HELIX 15 AB6 ASP B 59 ASP B 62 5 4 HELIX 16 AB7 SER B 72 GLY B 84 1 13 HELIX 17 AB8 GLY B 86 SER B 101 1 16 HELIX 18 AB9 ASP B 104 GLU B 109 5 6 HELIX 19 AC1 SER B 114 ASP B 127 1 14 HELIX 20 AC2 ILE B 129 GLY B 145 1 17 HELIX 21 AC3 SER B 154 LYS B 162 1 9 HELIX 22 AC4 LEU B 163 MSE B 170 5 8 HELIX 23 AC5 THR B 172 ILE B 197 1 26 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C LYS A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N SER A 101 1555 1555 1.33 LINK C PHE A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N PHE A 140 1555 1555 1.33 LINK C ASP A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N ASN A 171 1555 1555 1.33 LINK C PHE A 185 N MSE A 186 1555 1555 1.33 LINK C MSE A 186 N LEU A 187 1555 1555 1.33 LINK C LYS B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N SER B 101 1555 1555 1.33 LINK C PHE B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N PHE B 140 1555 1555 1.33 LINK C ASP B 168 N MSE B 169 1555 1555 1.33 LINK C MSE B 169 N MSE B 170 1555 1555 1.33 LINK C MSE B 170 N ASN B 171 1555 1555 1.33 LINK C PHE B 185 N MSE B 186 1555 1555 1.33 LINK C MSE B 186 N LEU B 187 1555 1555 1.33 LINK NE2 HIS A 29 NI NI A 301 1555 1555 2.76 SITE 1 AC1 4 HIS A 29 HIS A 58 ASP A 59 ASP A 124 SITE 1 AC2 3 HIS B 29 ASP B 59 ASP B 124 CRYST1 47.487 53.087 83.388 90.00 93.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021058 0.000000 0.001363 0.00000 SCALE2 0.000000 0.018837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012017 0.00000 HETATM 1 N MSE A 1 -14.014 8.845 16.429 1.00 64.02 N ANISOU 1 N MSE A 1 6875 8314 9133 1187 369 -1364 N HETATM 2 CA MSE A 1 -13.602 8.617 15.014 1.00 62.45 C ANISOU 2 CA MSE A 1 6763 7920 9044 1009 334 -1098 C HETATM 3 C MSE A 1 -13.976 7.208 14.554 1.00 60.05 C ANISOU 3 C MSE A 1 6505 7796 8515 868 432 -865 C HETATM 4 O MSE A 1 -13.897 6.248 15.324 1.00 59.56 O ANISOU 4 O MSE A 1 6460 7948 8222 848 510 -877 O HETATM 5 CB MSE A 1 -12.094 8.852 14.848 1.00 62.24 C ANISOU 5 CB MSE A 1 6837 7703 9109 932 259 -1110 C HETATM 6 CG MSE A 1 -11.628 9.110 13.407 1.00 63.59 C ANISOU 6 CG MSE A 1 7048 7654 9458 798 188 -878 C HETATM 7 SE MSE A 1 -12.479 10.663 12.537 1.00 71.29 SE ANISOU 7 SE MSE A 1 7891 8373 10821 871 54 -831 SE HETATM 8 CE MSE A 1 -11.334 10.782 10.948 1.00 68.68 C ANISOU 8 CE MSE A 1 7613 7849 10630 670 -29 -514 C