HEADER CELL ADHESION 01-MAR-16 5II5 TITLE CRYSTAL STRUCTURE OF RED ABALONE VERL REPEAT 1 AT 1.8 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-BINDING PERIPLASMIC PROTEIN,VITELLINE ENVELOPE COMPND 3 SPERM LYSIN RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MBP,MMBP,MALTODEXTRIN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THIS PROTEIN IS A CHIMERA. RESIDUES 3667-4034 ARE FROM COMPND 9 E. COLI MALTOSE BINDING PROTEIN (MBP), CORRESPOND TO RESIDUES 26-393 COMPND 10 OF SWISS-PROT DATABASE ENTRY P0AEX9 AND CONTAIN MUTATIONS A3667T, COMPND 11 D3749A, K3750A, E3839A, N3840A, A3882H, K3886H, K3906A, A3979V, COMPND 12 I3984V, E4026A, E4029A, D4030A AND R4034N (CORRESPONDING TO A26T, COMPND 13 D108A, K109A, E198A, N199A, A241H, K245H, K265A, A338V, I343V, E385A, COMPND 14 E388A, D389A AND R393N IN P0AEX9). RESIDUES 4038-4151 ARE FROM RED COMPND 15 ABALONE VITELLINE ENVELOPE SPERM LYSIN RECEPTOR AND CORRESPOND TO COMPND 16 RESIDUES 38-151 OF SWISS-PROT DATABASE ENTRY Q8WR62 AND CONTAIN COMPND 17 MUTATIONS N4115Q, N4122T AND N4142Y (CORRESPONDING TO N115Q, N122T COMPND 18 AND N142Y). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, HALIOTIS RUFESCENS; SOURCE 3 ORGANISM_COMMON: CALIFORNIA RED ABALONE; SOURCE 4 ORGANISM_TAXID: 83333, 6454; SOURCE 5 STRAIN: K12; SOURCE 6 GENE: MALE, B4034, JW3994, VERL; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN, HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID, PLASMID; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PHLSEC; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CELL ADHESION, FERTILIZATION, EGG-SPERM INTERACTION, GAMETE KEYWDS 2 RECOGNITION, VITELLINE ENVELOPE, SPERM RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR H.SADAT AL-HOSSEINI,I.RAJ,K.NISHIMURA,L.JOVINE REVDAT 8 13-NOV-24 5II5 1 REMARK REVDAT 7 10-JAN-24 5II5 1 HETSYN REVDAT 6 29-JUL-20 5II5 1 COMPND REMARK HET HETNAM REVDAT 6 2 1 FORMUL LINK SITE ATOM REVDAT 5 03-APR-19 5II5 1 SOURCE REVDAT 4 29-NOV-17 5II5 1 REMARK REVDAT 3 06-SEP-17 5II5 1 REMARK REVDAT 2 28-JUN-17 5II5 1 JRNL REVDAT 1 14-JUN-17 5II5 0 JRNL AUTH I.RAJ,H.SADAT AL HOSSEINI,E.DIOGUARDI,K.NISHIMURA,L.HAN, JRNL AUTH 2 A.VILLA,D.DE SANCTIS,L.JOVINE JRNL TITL STRUCTURAL BASIS OF EGG COAT-SPERM RECOGNITION AT JRNL TITL 2 FERTILIZATION. JRNL REF CELL V. 169 1315 2017 JRNL REFN ISSN 1097-4172 JRNL PMID 28622512 JRNL DOI 10.1016/J.CELL.2017.05.033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.J.SWANSON,J.E.AAGAARD,V.D.VACQUIER,M.MONNE, REMARK 1 AUTH 2 H.SADAT AL HOSSEINI,L.JOVINE REMARK 1 TITL THE MOLECULAR BASIS OF SEX: LINKING YEAST TO HUMAN. REMARK 1 REF MOL. BIOL. EVOL. V. 28 1963 2011 REMARK 1 REFN ESSN 1537-1719 REMARK 1 PMID 21282709 REMARK 1 DOI 10.1093/MOLBEV/MSR026 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.AAGAARD,X.YI,M.J.MACCOSS,W.J.SWANSON REMARK 1 TITL RAPIDLY EVOLVING ZONA PELLUCIDA DOMAIN PROTEINS ARE A MAJOR REMARK 1 TITL 2 COMPONENT OF THE VITELLINE ENVELOPE OF ABALONE EGGS. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 103 17302 2006 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 17085584 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.E.GALINDO,G.W.MOY,W.J.SWANSON,V.D.VACQUIER REMARK 1 TITL FULL-LENGTH SEQUENCE OF VERL, THE EGG VITELLINE ENVELOPE REMARK 1 TITL 2 RECEPTOR FOR ABALONE SPERM LYSIN. REMARK 1 REF GENE V. 288 111 2002 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 12034500 REMARK 1 REFERENCE 4 REMARK 1 AUTH W.J.SWANSON,V.D.VACQUIER REMARK 1 TITL THE ABALONE EGG VITELLINE ENVELOPE RECEPTOR FOR SPERM LYSIN REMARK 1 TITL 2 IS A GIANT MULTIVALENT MOLECULE. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 94 6724 1997 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9192632 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-1894_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 61675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8455 - 5.1149 0.95 2713 151 0.1853 0.2156 REMARK 3 2 5.1149 - 4.0614 0.99 2646 136 0.1398 0.1719 REMARK 3 3 4.0614 - 3.5484 0.99 2577 146 0.1608 0.2077 REMARK 3 4 3.5484 - 3.2242 0.99 2583 141 0.1779 0.2249 REMARK 3 5 3.2242 - 2.9932 1.00 2580 132 0.2047 0.2485 REMARK 3 6 2.9932 - 2.8168 1.00 2575 142 0.1995 0.2170 REMARK 3 7 2.8168 - 2.6758 1.00 2555 142 0.2019 0.2047 REMARK 3 8 2.6758 - 2.5593 1.00 2573 132 0.2088 0.2682 REMARK 3 9 2.5593 - 2.4608 0.99 2535 134 0.2156 0.2535 REMARK 3 10 2.4608 - 2.3759 0.99 2529 138 0.2078 0.2075 REMARK 3 11 2.3759 - 2.3016 0.99 2543 137 0.2098 0.2551 REMARK 3 12 2.3016 - 2.2358 1.00 2507 135 0.2240 0.2394 REMARK 3 13 2.2358 - 2.1770 0.99 2536 135 0.2367 0.2572 REMARK 3 14 2.1770 - 2.1239 1.00 2530 137 0.2397 0.2788 REMARK 3 15 2.1239 - 2.0756 0.99 2513 136 0.2520 0.2801 REMARK 3 16 2.0756 - 2.0314 1.00 2513 135 0.2622 0.3002 REMARK 3 17 2.0314 - 1.9908 1.00 2523 135 0.2763 0.3075 REMARK 3 18 1.9908 - 1.9532 1.00 2510 135 0.2873 0.2986 REMARK 3 19 1.9532 - 1.9184 1.00 2508 136 0.3094 0.3529 REMARK 3 20 1.9184 - 1.8858 0.99 2501 136 0.3321 0.3368 REMARK 3 21 1.8858 - 1.8554 0.99 2489 136 0.3621 0.3889 REMARK 3 22 1.8554 - 1.8269 0.99 2508 133 0.3662 0.4075 REMARK 3 23 1.8269 - 1.8000 0.99 2475 133 0.3767 0.4205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3862 REMARK 3 ANGLE : 1.337 5248 REMARK 3 CHIRALITY : 0.060 578 REMARK 3 PLANARITY : 0.009 671 REMARK 3 DIHEDRAL : 12.874 1407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESI 35:402 OR RESI 900) REMARK 3 ORIGIN FOR THE GROUP (A): 70.0397 58.9955 10.2572 REMARK 3 T TENSOR REMARK 3 T11: 0.2669 T22: 0.4377 REMARK 3 T33: 0.3609 T12: 0.0191 REMARK 3 T13: 0.0120 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.0534 L22: 1.0257 REMARK 3 L33: 5.2320 L12: 0.4803 REMARK 3 L13: -1.8541 L23: -0.6840 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: 0.4359 S13: 0.2408 REMARK 3 S21: -0.0135 S22: 0.0820 S23: 0.1466 REMARK 3 S31: -0.4689 S32: -0.8993 S33: 0.1034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 403:510 REMARK 3 ORIGIN FOR THE GROUP (A): 95.2940 44.5098 -6.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.4550 T22: 0.5472 REMARK 3 T33: 0.4750 T12: 0.0818 REMARK 3 T13: 0.0389 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 2.0892 L22: 0.9558 REMARK 3 L33: 1.8814 L12: -0.8628 REMARK 3 L13: -0.6453 L23: 0.5557 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.1168 S13: -0.3423 REMARK 3 S21: -0.0244 S22: -0.0567 S23: 0.0778 REMARK 3 S31: 0.4153 S32: 0.6347 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5II5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20141103 REMARK 200 DATA SCALING SOFTWARE : XDS 20141103 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.837 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04992 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SET, 3SEX AND 4WRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 0.1M CHES, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.90000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.45000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.17500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.72500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 163.62500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.90000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.45000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.72500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 98.17500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 163.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 3664 REMARK 465 THR A 3665 REMARK 465 GLY A 3666 REMARK 465 THR A 3667 REMARK 465 LYS A 3668 REMARK 465 ILE A 3669 REMARK 465 SER A 4146 REMARK 465 GLN A 4147 REMARK 465 ALA A 4148 REMARK 465 SER A 4149 REMARK 465 ASN A 4150 REMARK 465 ALA A 4151 REMARK 465 LEU A 4152 REMARK 465 GLU A 4153 REMARK 465 HIS A 4154 REMARK 465 HIS A 4155 REMARK 465 HIS A 4156 REMARK 465 HIS A 4157 REMARK 465 HIS A 4158 REMARK 465 HIS A 4159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 3822 HO6 GLC B 2 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A3775 -59.37 -122.34 REMARK 500 ALA A3835 -73.54 -85.45 REMARK 500 GLN A4094 -12.64 74.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5II4 RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIC RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 3D4C RELATED DB: PDB REMARK 900 RELATED ID: 3D4G RELATED DB: PDB REMARK 900 RELATED ID: 3EF7 RELATED DB: PDB REMARK 900 RELATED ID: 3NK3 RELATED DB: PDB REMARK 900 RELATED ID: 3NK4 RELATED DB: PDB REMARK 900 RELATED ID: 5II6 RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIA RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION REMARK 900 RELATED ID: 5IIB RELATED DB: PDB REMARK 900 RELATED ENTRY UNDER SUBMISSION DBREF 5II5 A 3668 4034 UNP P0AEX9 MALE_ECOLI 27 393 DBREF 5II5 A 4038 4151 UNP Q8WR62 Q8WR62_HALRU 38 151 SEQADV 5II5 GLU A 3664 UNP P0AEX9 EXPRESSION TAG SEQADV 5II5 THR A 3665 UNP P0AEX9 EXPRESSION TAG SEQADV 5II5 GLY A 3666 UNP P0AEX9 EXPRESSION TAG SEQADV 5II5 THR A 3667 UNP P0AEX9 EXPRESSION TAG SEQADV 5II5 ALA A 3749 UNP P0AEX9 ASP 108 CONFLICT SEQADV 5II5 ALA A 3750 UNP P0AEX9 LYS 109 CONFLICT SEQADV 5II5 ALA A 3839 UNP P0AEX9 GLU 198 CONFLICT SEQADV 5II5 ALA A 3840 UNP P0AEX9 ASN 199 CONFLICT SEQADV 5II5 HIS A 3882 UNP P0AEX9 ALA 241 CONFLICT SEQADV 5II5 HIS A 3886 UNP P0AEX9 LYS 245 CONFLICT SEQADV 5II5 ALA A 3906 UNP P0AEX9 LYS 265 CONFLICT SEQADV 5II5 VAL A 3979 UNP P0AEX9 ALA 338 CONFLICT SEQADV 5II5 VAL A 3984 UNP P0AEX9 ILE 343 CONFLICT SEQADV 5II5 ALA A 4026 UNP P0AEX9 GLU 385 CONFLICT SEQADV 5II5 ALA A 4029 UNP P0AEX9 LYS 388 CONFLICT SEQADV 5II5 ALA A 4030 UNP P0AEX9 ASP 389 CONFLICT SEQADV 5II5 ASN A 4034 UNP P0AEX9 ARG 393 CONFLICT SEQADV 5II5 ALA A 4035 UNP P0AEX9 LINKER SEQADV 5II5 ALA A 4036 UNP P0AEX9 LINKER SEQADV 5II5 ALA A 4037 UNP P0AEX9 LINKER SEQADV 5II5 GLN A 4115 UNP Q8WR62 ASN 115 CONFLICT SEQADV 5II5 THR A 4122 UNP Q8WR62 ASN 122 CONFLICT SEQADV 5II5 TYR A 4142 UNP Q8WR62 ASN 142 CONFLICT SEQADV 5II5 LEU A 4152 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 GLU A 4153 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4154 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4155 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4156 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4157 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4158 UNP Q8WR62 EXPRESSION TAG SEQADV 5II5 HIS A 4159 UNP Q8WR62 EXPRESSION TAG SEQRES 1 A 496 GLU THR GLY THR LYS ILE GLU GLU GLY LYS LEU VAL ILE SEQRES 2 A 496 TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU SEQRES 3 A 496 VAL GLY LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL SEQRES 4 A 496 THR VAL GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO SEQRES 5 A 496 GLN VAL ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE SEQRES 6 A 496 TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY SEQRES 7 A 496 LEU LEU ALA GLU ILE THR PRO ALA ALA ALA PHE GLN ASP SEQRES 8 A 496 LYS LEU TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN SEQRES 9 A 496 GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SEQRES 10 A 496 SER LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO SEQRES 11 A 496 LYS THR TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU SEQRES 12 A 496 LYS ALA LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN SEQRES 13 A 496 GLU PRO TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY SEQRES 14 A 496 GLY TYR ALA PHE LYS TYR ALA ALA GLY LYS TYR ASP ILE SEQRES 15 A 496 LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY SEQRES 16 A 496 LEU THR PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET SEQRES 17 A 496 ASN ALA ASP THR ASP TYR SER ILE ALA GLU HIS ALA PHE SEQRES 18 A 496 ASN HIS GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP SEQRES 19 A 496 ALA TRP SER ASN ILE ASP THR SER ALA VAL ASN TYR GLY SEQRES 20 A 496 VAL THR VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS SEQRES 21 A 496 PRO PHE VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SEQRES 22 A 496 SER PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN SEQRES 23 A 496 TYR LEU LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS SEQRES 24 A 496 ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU SEQRES 25 A 496 GLU GLU LEU VAL LYS ASP PRO ARG VAL ALA ALA THR MET SEQRES 26 A 496 GLU ASN ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO SEQRES 27 A 496 GLN MET SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL SEQRES 28 A 496 ILE ASN ALA ALA SER GLY ARG GLN THR VAL ASP ALA ALA SEQRES 29 A 496 LEU ALA ALA ALA GLN THR ASN ALA ALA ALA ASP LEU THR SEQRES 30 A 496 LEU VAL CYS SER ASP ASP LYS SER LYS GLN ALA THR LEU SEQRES 31 A 496 ILE SER TYR PRO VAL THR PHE LYS GLY HIS VAL ILE LYS SEQRES 32 A 496 ASP MET GLN ILE PHE CYS LYS ASN GLY TRP MET GLN MET SEQRES 33 A 496 THR ARG GLY ARG GLY ILE ASN MET ILE ARG ILE HIS TYR SEQRES 34 A 496 PRO GLN THR TYR THR SER VAL VAL PRO GLY ALA CYS VAL SEQRES 35 A 496 PHE ARG GLY PRO TYR SER VAL PRO THR GLN ASP SER ILE SEQRES 36 A 496 GLU MET TYR THR VAL SER VAL ALA LEU LEU TRP SER ASP SEQRES 37 A 496 GLY THR PRO THR TYR GLU SER LEU GLU CYS TYR VAL THR SEQRES 38 A 496 LYS SER GLN ALA SER ASN ALA LEU GLU HIS HIS HIS HIS SEQRES 39 A 496 HIS HIS HET GLC B 1 22 HET GLC B 2 22 HET PGE A4202 24 HET PGE A4203 24 HET PGE A4204 24 HET PGE A4205 24 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM PGE TRIETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 PGE 4(C6 H14 O4) FORMUL 7 HOH *217(H2 O) HELIX 1 AA1 GLY A 3683 GLY A 3699 1 17 HELIX 2 AA2 LYS A 3709 ALA A 3719 1 11 HELIX 3 AA3 ARG A 3733 SER A 3740 1 8 HELIX 4 AA4 ALA A 3749 LYS A 3755 1 7 HELIX 5 AA5 TYR A 3757 VAL A 3764 1 8 HELIX 6 AA6 THR A 3795 GLU A 3797 5 3 HELIX 7 AA7 GLU A 3798 ALA A 3808 1 11 HELIX 8 AA8 GLU A 3820 ALA A 3829 1 10 HELIX 9 AA9 ASN A 3852 ASN A 3868 1 17 HELIX 10 AB1 ASP A 3876 HIS A 3886 1 11 HELIX 11 AB2 GLY A 3895 TRP A 3897 5 3 HELIX 12 AB3 ALA A 3898 SER A 3905 1 8 HELIX 13 AB4 ASN A 3939 TYR A 3950 1 12 HELIX 14 AB5 THR A 3953 LYS A 3964 1 12 HELIX 15 AB6 LEU A 3971 VAL A 3979 1 9 HELIX 16 AB7 ASP A 3981 GLY A 3994 1 14 HELIX 17 AB8 GLN A 4002 SER A 4019 1 18 HELIX 18 AB9 THR A 4023 ASP A 4038 1 16 SHEET 1 AA1 6 VAL A3702 GLU A3705 0 SHEET 2 AA1 6 LEU A3674 TRP A3677 1 N LEU A3674 O THR A3703 SHEET 3 AA1 6 ILE A3726 ALA A3730 1 O PHE A3728 N TRP A3677 SHEET 4 AA1 6 PHE A3925 ILE A3933 -1 O GLY A3932 N ILE A3727 SHEET 5 AA1 6 TYR A3773 GLU A3778 -1 N GLU A3778 O GLY A3927 SHEET 6 AA1 6 ALA A3968 VAL A3969 -1 O ALA A3968 N VAL A3777 SHEET 1 AA2 5 VAL A3702 GLU A3705 0 SHEET 2 AA2 5 LEU A3674 TRP A3677 1 N LEU A3674 O THR A3703 SHEET 3 AA2 5 ILE A3726 ALA A3730 1 O PHE A3728 N TRP A3677 SHEET 4 AA2 5 PHE A3925 ILE A3933 -1 O GLY A3932 N ILE A3727 SHEET 5 AA2 5 GLU A3995 ILE A3996 1 O GLU A3995 N VAL A3926 SHEET 1 AA3 2 ARG A3765 TYR A3766 0 SHEET 2 AA3 2 LYS A3769 LEU A3770 -1 O LYS A3769 N TYR A3766 SHEET 1 AA4 4 SER A3812 LEU A3814 0 SHEET 2 AA4 4 THR A3889 ASN A3894 1 O ALA A3890 N SER A3812 SHEET 3 AA4 4 SER A3781 ASN A3785 -1 N ILE A3783 O THR A3892 SHEET 4 AA4 4 TYR A3909 THR A3912 -1 O THR A3912 N LEU A3782 SHEET 1 AA5 2 TYR A3834 ALA A3839 0 SHEET 2 AA5 2 LYS A3842 GLY A3849 -1 O ASP A3844 N LYS A3837 SHEET 1 AA6 4 LEU A4039 VAL A4042 0 SHEET 2 AA6 4 ALA A4051 SER A4055 -1 O THR A4052 N VAL A4042 SHEET 3 AA6 4 ASN A4086 HIS A4091 -1 O ILE A4088 N LEU A4053 SHEET 4 AA6 4 CYS A4104 VAL A4105 1 O CYS A4104 N HIS A4091 SHEET 1 AA7 4 GLY A4075 GLN A4078 0 SHEET 2 AA7 4 ILE A4065 CYS A4072 -1 N ILE A4070 O MET A4077 SHEET 3 AA7 4 ILE A4118 TRP A4129 -1 O SER A4124 N PHE A4071 SHEET 4 AA7 4 ARG A4107 SER A4111 -1 N TYR A4110 O MET A4120 SHEET 1 AA8 4 GLY A4075 GLN A4078 0 SHEET 2 AA8 4 ILE A4065 CYS A4072 -1 N ILE A4070 O MET A4077 SHEET 3 AA8 4 ILE A4118 TRP A4129 -1 O SER A4124 N PHE A4071 SHEET 4 AA8 4 PRO A4134 THR A4144 -1 O THR A4135 N LEU A4127 SSBOND 1 CYS A 4043 CYS A 4141 1555 1555 2.05 SSBOND 2 CYS A 4072 CYS A 4104 1555 1555 2.03 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.39 CISPEP 1 GLY A 4108 PRO A 4109 0 -1.07 CRYST1 107.090 107.090 196.350 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009338 0.005391 0.000000 0.00000 SCALE2 0.000000 0.010783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005093 0.00000