HEADER TRANSFERASE 01-MAR-16 5IIQ TITLE STRUCTURE OF THE SPX-TTM DOMAIN FRAGMENT OF THE YEAST INORGANIC TITLE 2 POLYPHOPHATE POLYMERASE VTC4 (FORM B). COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR TRANSPORTER CHAPERONE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SPX DOMAIN- TTM DOMAIN, UNP RESIDUES 2-480; COMPND 5 SYNONYM: PHOSPHATE METABOLISM PROTEIN 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: VTC4, PHM3, YJL012C, J1345; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMH-HT KEYWDS HELICAL BUNDLE, ALPHA-HELICAL HAIRPIN, INOSITOL PHOSPHATE BINDING, KEYWDS 2 PROTEIN-PROTEIN INTERACTION, CHAPERONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WILD,M.HOTHORN REVDAT 4 10-JAN-24 5IIQ 1 REMARK REVDAT 3 28-SEP-16 5IIQ 1 REVDAT 2 01-JUN-16 5IIQ 1 JRNL REVDAT 1 27-APR-16 5IIQ 0 JRNL AUTH R.WILD,R.GERASIMAITE,J.Y.JUNG,V.TRUFFAULT,I.PAVLOVIC, JRNL AUTH 2 A.SCHMIDT,A.SAIARDI,H.J.JESSEN,Y.POIRIER,M.HOTHORN,A.MAYER JRNL TITL CONTROL OF EUKARYOTIC PHOSPHATE HOMEOSTASIS BY INOSITOL JRNL TITL 2 POLYPHOSPHATE SENSOR DOMAINS. JRNL REF SCIENCE V. 352 986 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27080106 JRNL DOI 10.1126/SCIENCE.AAD9858 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2692 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2716 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2558 REMARK 3 BIN R VALUE (WORKING SET) : 0.2665 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 134 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.01160 REMARK 3 B22 (A**2) : -6.01160 REMARK 3 B33 (A**2) : 12.02320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.766 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.395 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 3.075 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.395 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3902 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5280 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1388 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 110 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 552 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3902 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 494 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4266 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 38.0344 35.3267 302.9100 REMARK 3 T TENSOR REMARK 3 T11: -0.4124 T22: 0.2787 REMARK 3 T33: 0.0351 T12: -0.0235 REMARK 3 T13: 0.0716 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.0418 L22: 0.3585 REMARK 3 L33: 2.6246 L12: -0.0379 REMARK 3 L13: 0.4371 L23: 0.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: -0.0221 S13: 0.0120 REMARK 3 S21: -0.0107 S22: 0.2223 S23: 0.1549 REMARK 3 S31: 0.1636 S32: -0.2283 S33: -0.1504 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15492 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3G3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 1.5M AMSO4, 4% PEG 1000, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.57733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 201.15467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 100.57733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 201.15467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.57733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 201.15467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.57733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 201.15467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 ILE A 181 REMARK 465 LYS A 182 REMARK 465 GLY A 183 REMARK 465 ASP A 184 REMARK 465 SER A 185 REMARK 465 SER A 186 REMARK 465 ALA A 187 REMARK 465 GLY A 188 REMARK 465 GLY A 189 REMARK 465 LYS A 190 REMARK 465 GLN A 191 REMARK 465 GLN A 192 REMARK 465 PHE A 476 REMARK 465 TRP A 477 REMARK 465 LEU A 478 REMARK 465 PRO A 479 REMARK 465 GLN A 480 REMARK 465 GLY A 481 REMARK 465 SER A 482 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 HIS A 6 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 SER A 8 OG REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 SER A 10 OG REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 TYR A 18 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 ILE A 54 CG1 CG2 CD1 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 ARG A 179 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 224 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 226 OG1 CG2 REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 160 -8.32 59.88 REMARK 500 SER A 177 46.27 39.83 REMARK 500 ASN A 225 80.57 -68.86 REMARK 500 HIS A 395 62.68 65.66 REMARK 500 LYS A 396 18.00 58.35 REMARK 500 ASP A 406 66.68 -69.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POP A 503 DBREF 5IIQ A 2 480 UNP P47075 VTC4_YEAST 2 480 SEQADV 5IIQ GLY A -2 UNP P47075 EXPRESSION TAG SEQADV 5IIQ ALA A -1 UNP P47075 EXPRESSION TAG SEQADV 5IIQ MET A 0 UNP P47075 EXPRESSION TAG SEQADV 5IIQ GLY A 1 UNP P47075 EXPRESSION TAG SEQADV 5IIQ GLY A 481 UNP P47075 EXPRESSION TAG SEQADV 5IIQ SER A 482 UNP P47075 EXPRESSION TAG SEQRES 1 A 485 GLY ALA MET GLY LYS PHE GLY GLU HIS LEU SER LYS SER SEQRES 2 A 485 LEU ILE ARG GLN TYR SER TYR TYR TYR ILE SER TYR ASP SEQRES 3 A 485 ASP LEU LYS THR GLU LEU GLU ASP ASN LEU SER LYS ASN SEQRES 4 A 485 ASN GLY GLN TRP THR GLN GLU LEU GLU THR ASP PHE LEU SEQRES 5 A 485 GLU SER LEU GLU ILE GLU LEU ASP LYS VAL TYR THR PHE SEQRES 6 A 485 CYS LYS VAL LYS HIS SER GLU VAL PHE ARG ARG VAL LYS SEQRES 7 A 485 GLU VAL GLN GLU GLN VAL GLN HIS THR VAL ARG LEU LEU SEQRES 8 A 485 ASP SER ASN ASN PRO PRO THR GLN LEU ASP PHE GLU ILE SEQRES 9 A 485 LEU GLU GLU GLU LEU SER ASP ILE ILE ALA ASP VAL HIS SEQRES 10 A 485 ASP LEU ALA LYS PHE SER ARG LEU ASN TYR THR GLY PHE SEQRES 11 A 485 GLN LYS ILE ILE LYS LYS HIS ASP LYS LYS THR GLY PHE SEQRES 12 A 485 ILE LEU LYS PRO VAL PHE GLN VAL ARG LEU ASP SER LYS SEQRES 13 A 485 PRO PHE PHE LYS GLU ASN TYR ASP GLU LEU VAL VAL LYS SEQRES 14 A 485 ILE SER GLN LEU TYR ASP ILE ALA ARG THR SER GLY ARG SEQRES 15 A 485 PRO ILE LYS GLY ASP SER SER ALA GLY GLY LYS GLN GLN SEQRES 16 A 485 ASN PHE VAL ARG GLN THR THR LYS TYR TRP VAL HIS PRO SEQRES 17 A 485 ASP ASN ILE THR GLU LEU LYS LEU ILE ILE LEU LYS HIS SEQRES 18 A 485 LEU PRO VAL LEU VAL PHE ASN THR ASN LYS GLU PHE GLU SEQRES 19 A 485 ARG GLU ASP SER ALA ILE THR SER ILE TYR PHE ASP ASN SEQRES 20 A 485 GLU ASN LEU ASP LEU TYR TYR GLY ARG LEU ARG LYS ASP SEQRES 21 A 485 GLU GLY ALA GLU ALA HIS ARG LEU ARG TRP TYR GLY GLY SEQRES 22 A 485 MET SER THR ASP THR ILE PHE VAL GLU ARG LYS THR HIS SEQRES 23 A 485 ARG GLU ASP TRP THR GLY GLU LYS SER VAL LYS ALA ARG SEQRES 24 A 485 PHE ALA LEU LYS GLU ARG HIS VAL ASN ASP PHE LEU LYS SEQRES 25 A 485 GLY LYS TYR THR VAL ASP GLN VAL PHE ALA LYS MET ARG SEQRES 26 A 485 LYS GLU GLY LYS LYS PRO MET ASN GLU ILE GLU ASN LEU SEQRES 27 A 485 GLU ALA LEU ALA SER GLU ILE GLN TYR VAL MET LEU LYS SEQRES 28 A 485 LYS LYS LEU ARG PRO VAL VAL ARG SER PHE TYR ASN ARG SEQRES 29 A 485 THR ALA PHE GLN LEU PRO GLY ASP ALA ARG VAL ARG ILE SEQRES 30 A 485 SER LEU ASP THR GLU LEU THR MET VAL ARG GLU ASP ASN SEQRES 31 A 485 PHE ASP GLY VAL ASP ARG THR HIS LYS ASN TRP ARG ARG SEQRES 32 A 485 THR ASP ILE GLY VAL ASP TRP PRO PHE LYS GLN LEU ASP SEQRES 33 A 485 ASP LYS ASP ILE CYS ARG PHE PRO TYR ALA VAL LEU GLU SEQRES 34 A 485 VAL LYS LEU GLN THR GLN LEU GLY GLN GLU PRO PRO GLU SEQRES 35 A 485 TRP VAL ARG GLU LEU VAL GLY SER HIS LEU VAL GLU PRO SEQRES 36 A 485 VAL PRO LYS PHE SER LYS PHE ILE HIS GLY VAL ALA THR SEQRES 37 A 485 LEU LEU ASN ASP LYS VAL ASP SER ILE PRO PHE TRP LEU SEQRES 38 A 485 PRO GLN GLY SER HET SO4 A 500 5 HET SO4 A 501 5 HET SO4 A 502 5 HET POP A 503 9 HETNAM SO4 SULFATE ION HETNAM POP PYROPHOSPHATE 2- FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 POP H2 O7 P2 2- HELIX 1 AA1 GLY A 1 LYS A 9 1 9 HELIX 2 AA2 SER A 21 ASN A 36 1 16 HELIX 3 AA3 THR A 41 LEU A 87 1 47 HELIX 4 AA4 THR A 95 THR A 138 1 44 HELIX 5 AA5 LEU A 142 LYS A 153 1 12 HELIX 6 AA6 TYR A 160 THR A 176 1 17 HELIX 7 AA7 ASN A 207 LEU A 219 1 13 HELIX 8 AA8 GLU A 231 ASP A 234 5 4 HELIX 9 AA9 LEU A 247 ARG A 255 1 9 HELIX 10 AB1 GLU A 285 GLY A 289 5 5 HELIX 11 AB2 HIS A 303 GLY A 310 1 8 HELIX 12 AB3 THR A 313 GLY A 325 1 13 HELIX 13 AB4 PRO A 328 LYS A 349 1 22 HELIX 14 AB5 ASP A 413 LYS A 415 5 3 HELIX 15 AB6 PRO A 438 GLY A 446 1 9 HELIX 16 AB7 SER A 457 LEU A 467 1 11 SHEET 1 AA1 7 VAL A 293 LYS A 300 0 SHEET 2 AA1 7 THR A 275 THR A 282 -1 N ILE A 276 O LEU A 299 SHEET 3 AA1 7 GLU A 261 TYR A 268 -1 N ARG A 266 O PHE A 277 SHEET 4 AA1 7 ALA A 236 ASP A 243 -1 N ILE A 240 O LEU A 265 SHEET 5 AA1 7 ARG A 352 PHE A 364 -1 O VAL A 355 N TYR A 241 SHEET 6 AA1 7 VAL A 372 ARG A 384 -1 O ILE A 374 N PHE A 364 SHEET 7 AA1 7 ILE A 417 ARG A 419 -1 O CYS A 418 N MET A 382 SHEET 1 AA2 9 VAL A 293 LYS A 300 0 SHEET 2 AA2 9 THR A 275 THR A 282 -1 N ILE A 276 O LEU A 299 SHEET 3 AA2 9 GLU A 261 TYR A 268 -1 N ARG A 266 O PHE A 277 SHEET 4 AA2 9 ALA A 236 ASP A 243 -1 N ILE A 240 O LEU A 265 SHEET 5 AA2 9 ARG A 352 PHE A 364 -1 O VAL A 355 N TYR A 241 SHEET 6 AA2 9 VAL A 372 ARG A 384 -1 O ILE A 374 N PHE A 364 SHEET 7 AA2 9 ALA A 423 GLN A 432 -1 O LYS A 428 N ARG A 373 SHEET 8 AA2 9 PHE A 194 VAL A 203 -1 N VAL A 195 O THR A 431 SHEET 9 AA2 9 VAL A 450 PRO A 452 -1 O GLU A 451 N TRP A 202 CISPEP 1 TRP A 407 PRO A 408 0 6.13 SITE 1 AC1 6 TYR A 241 ARG A 264 LYS A 281 SER A 457 SITE 2 AC1 6 LYS A 458 PHE A 459 SITE 1 AC2 3 LYS A 291 SER A 292 SO4 A 502 SITE 1 AC3 4 LYS A 256 HIS A 283 SER A 292 SO4 A 501 SITE 1 AC4 7 ARG A 264 ARG A 266 LYS A 281 LYS A 294 SITE 2 AC4 7 TYR A 359 ARG A 361 LYS A 458 CRYST1 92.041 92.041 301.732 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010865 0.006273 0.000000 0.00000 SCALE2 0.000000 0.012546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003314 0.00000