HEADER SUGAR BINDING PROTEIN 01-MAR-16 5IJ3 TITLE SRPA ADHESIN IN COMPLEX WITH SIALYL T ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET-BINDING GLYCOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SANGUINIS (STRAIN SK36); SOURCE 3 ORGANISM_TAXID: 388919; SOURCE 4 STRAIN: SK36; SOURCE 5 GENE: SRPA, SSA_0829; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADHESIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.IVERSON REVDAT 5 06-MAR-24 5IJ3 1 HETSYN LINK REVDAT 4 29-JUL-20 5IJ3 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-DEC-19 5IJ3 1 REMARK REVDAT 2 20-SEP-17 5IJ3 1 REMARK REVDAT 1 08-FEB-17 5IJ3 0 JRNL AUTH L.V.LOUKACHEVITCH,B.A.BENSING,H.YU,J.ZENG,X.CHEN,P.M.SULLAM, JRNL AUTH 2 T.M.IVERSON JRNL TITL STRUCTURES OF THE STREPTOCOCCUS SANGUINIS SRPA BINDING JRNL TITL 2 REGION WITH HUMAN SIALOGLYCANS SUGGEST FEATURES OF THE JRNL TITL 3 PHYSIOLOGICAL LIGAND. JRNL REF BIOCHEMISTRY 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27685666 JRNL DOI 10.1021/ACS.BIOCHEM.6B00704 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.540 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.8190 - 4.0932 0.99 4004 145 0.1518 0.1624 REMARK 3 2 4.0932 - 3.2505 1.00 3945 146 0.1673 0.1756 REMARK 3 3 3.2505 - 2.8401 1.00 3902 143 0.1829 0.1813 REMARK 3 4 2.8401 - 2.5806 1.00 3911 144 0.1987 0.2370 REMARK 3 5 2.5806 - 2.3957 1.00 3921 144 0.1951 0.1928 REMARK 3 6 2.3957 - 2.2546 1.00 3868 142 0.1996 0.2480 REMARK 3 7 2.2546 - 2.1417 1.00 3876 142 0.1971 0.2263 REMARK 3 8 2.1417 - 2.0485 1.00 3889 143 0.1990 0.2286 REMARK 3 9 2.0485 - 1.9697 1.00 3874 142 0.2119 0.2729 REMARK 3 10 1.9697 - 1.9017 1.00 3870 143 0.2041 0.2499 REMARK 3 11 1.9017 - 1.8423 1.00 3860 141 0.2159 0.2626 REMARK 3 12 1.8423 - 1.7896 1.00 3860 142 0.2232 0.2521 REMARK 3 13 1.7896 - 1.7425 1.00 3857 142 0.2304 0.2808 REMARK 3 14 1.7425 - 1.7000 0.98 3773 138 0.2454 0.2978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3219 REMARK 3 ANGLE : 0.900 4337 REMARK 3 CHIRALITY : 0.034 512 REMARK 3 PLANARITY : 0.004 575 REMARK 3 DIHEDRAL : 11.296 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, SODIUM CACODYLATE, REMARK 280 PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.95550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.38300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.95550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.38300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 660 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 783 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 445 REMARK 465 ALA B 446 REMARK 465 SER B 447 REMARK 465 SER B 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 434 O ACT A 509 1.27 REMARK 500 OG1 THR A 372 O ACT A 509 1.28 REMARK 500 O HOH A 807 O HOH A 882 1.85 REMARK 500 O HOH B 836 O HOH B 841 1.87 REMARK 500 O HOH B 875 O HOH B 958 1.95 REMARK 500 O HOH B 957 O HOH B 968 1.96 REMARK 500 O HOH B 893 O HOH B 899 1.98 REMARK 500 O HOH A 825 O HOH A 897 2.00 REMARK 500 NZ LYS B 340 O HOH B 601 2.02 REMARK 500 OE2 GLU A 307 O HOH A 601 2.06 REMARK 500 O HOH B 814 O HOH B 947 2.10 REMARK 500 NE ARG A 323 O HOH A 602 2.11 REMARK 500 O HOH A 809 O HOH A 896 2.11 REMARK 500 O HOH B 658 O HOH B 826 2.12 REMARK 500 O ALA A 338 O HOH A 603 2.13 REMARK 500 O HOH B 884 O HOH B 908 2.13 REMARK 500 O HOH A 648 O HOH A 915 2.13 REMARK 500 O HOH A 654 O HOH A 817 2.15 REMARK 500 O ALA A 405 O HOH A 604 2.15 REMARK 500 OG1 THR A 372 C ACT A 509 2.16 REMARK 500 O HOH A 603 O HOH A 830 2.16 REMARK 500 OG1 THR A 372 OD1 ASP A 434 2.16 REMARK 500 O HOH B 942 O HOH B 970 2.17 REMARK 500 O HOH B 872 O HOH B 891 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH B 652 3454 1.75 REMARK 500 O HOH B 900 O HOH B 952 2656 1.99 REMARK 500 O HOH A 903 O HOH B 970 3444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 390 84.57 -153.27 REMARK 500 ALA B 316 57.53 -150.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 930 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 932 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 933 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A 934 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH B 971 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 972 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 973 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 974 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 975 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 253 OD1 REMARK 620 2 ASP A 253 OD2 54.4 REMARK 620 3 THR A 255 O 81.9 135.1 REMARK 620 4 ASP A 281 OD1 165.1 140.5 83.6 REMARK 620 5 ASP A 281 OD2 139.9 87.0 137.7 54.4 REMARK 620 6 ASP A 282 OD1 88.5 91.8 96.8 90.5 81.5 REMARK 620 7 ASP A 353 OD2 89.5 85.6 84.7 91.9 98.9 177.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 372 O REMARK 620 2 THR A 372 OG1 72.2 REMARK 620 3 TYR A 375 O 75.9 123.6 REMARK 620 4 ASP A 434 OD1 126.2 54.0 133.4 REMARK 620 5 ASP A 434 OD2 119.3 78.4 78.5 55.0 REMARK 620 6 ACT A 509 O 98.6 31.1 149.7 31.1 78.6 REMARK 620 7 ACT A 509 OXT 93.1 72.5 154.5 71.5 126.4 53.7 REMARK 620 8 HOH A 704 O 142.6 141.0 89.3 88.8 90.1 110.3 85.7 REMARK 620 9 HOH A 779 O 73.1 131.8 77.7 143.4 149.1 129.9 77.0 70.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 400 OE1 REMARK 620 2 GLU A 400 OE2 54.1 REMARK 620 3 HOH A 666 O 76.2 74.8 REMARK 620 4 GLU B 400 OE1 158.0 128.9 83.8 REMARK 620 5 GLU B 400 OE2 137.9 148.1 132.1 54.2 REMARK 620 6 HOH B 658 O 124.6 72.6 105.9 69.6 82.1 REMARK 620 7 HOH B 710 O 84.5 134.3 77.3 82.2 75.3 150.9 REMARK 620 8 HOH B 717 O 74.1 92.5 149.7 124.2 70.8 96.0 93.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 253 OD1 REMARK 620 2 ASP B 253 OD2 55.0 REMARK 620 3 THR B 255 O 84.9 138.7 REMARK 620 4 ASP B 281 OD1 169.8 135.2 85.2 REMARK 620 5 ASP B 281 OD2 135.2 82.2 139.0 54.3 REMARK 620 6 ASP B 282 OD1 89.2 87.8 102.5 90.7 75.2 REMARK 620 7 ASP B 353 OD2 91.3 83.2 88.9 90.7 96.6 168.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 372 O REMARK 620 2 THR B 372 OG1 69.9 REMARK 620 3 TYR B 375 O 78.8 122.5 REMARK 620 4 ASP B 434 OD1 136.3 66.6 128.9 REMARK 620 5 ASP B 434 OD2 118.7 77.3 77.5 54.3 REMARK 620 6 HOH B 696 O 88.7 71.6 154.9 74.6 127.5 REMARK 620 7 HOH B 703 O 144.2 144.8 82.8 78.5 86.3 95.5 REMARK 620 8 HOH B 777 O 76.1 136.2 75.0 137.4 145.2 81.0 69.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 373 O REMARK 620 2 HOH B 639 O 122.7 REMARK 620 3 HOH B 699 O 76.0 80.2 REMARK 620 4 HOH B 742 O 71.9 74.0 116.8 REMARK 620 5 HOH B 816 O 85.9 143.9 87.2 140.8 REMARK 620 6 HOH B 818 O 76.9 141.4 138.4 83.3 59.9 REMARK 620 7 HOH B 833 O 139.2 80.3 75.8 148.3 63.8 106.7 REMARK 620 8 HOH B 936 O 131.7 79.2 151.8 75.3 98.4 64.8 82.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACT B 506 O REMARK 620 2 HOH B 628 O 87.3 REMARK 620 3 HOH B 682 O 72.6 81.4 REMARK 620 4 HOH B 825 O 98.5 82.0 161.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IIY RELATED DB: PDB REMARK 900 RELATED ID: 5IJ1 RELATED DB: PDB REMARK 900 RELATED ID: 5IJ2 RELATED DB: PDB DBREF 5IJ3 A 252 448 UNP A3CM52 A3CM52_STRSV 252 448 DBREF 5IJ3 B 252 448 UNP A3CM52 A3CM52_STRSV 252 448 SEQRES 1 A 197 THR ASP THR THR PRO PRO THR ILE THR VAL PRO SER ASP SEQRES 2 A 197 ILE ILE ALA TYR ARG GLY GLU GLU PHE GLU PHE TYR PHE SEQRES 3 A 197 GLU ILE THR ASP ASP SER GLY GLN VAL LYS ASN ILE GLU SEQRES 4 A 197 LEU SER THR PHE GLY LYS PRO LEU GLY LEU ASN TRP LEU SEQRES 5 A 197 GLU TYR SER GLU ASP ASN PHE ASN VAL PRO GLY ASN ALA SEQRES 6 A 197 THR SER ASP ASN PRO LEU ARG VAL ARG VAL HIS GLY THR SEQRES 7 A 197 VAL PRO LEU ASN GLU PRO ILE PRO ALA ASP LYS ASN ARG SEQRES 8 A 197 ALA GLN PHE THR ARG THR ILE ARG ALA TRP ASP ALA ALA SEQRES 9 A 197 GLY ASN VAL SER SER ASN ILE THR PHE VAL ILE LYS TYR SEQRES 10 A 197 ARG ALA GLN THR ASP LYS TYR ASN PRO ALA ASP PRO THR SEQRES 11 A 197 ILE THR TYR VAL ASP ARG LEU SER SER LEU SER PRO SER SEQRES 12 A 197 GLU LYS ASN ALA VAL GLU ALA ALA VAL ARG ALA ALA ASN SEQRES 13 A 197 PRO GLN ILE PRO ALA ALA ALA ARG ILE THR VAL SER ALA SEQRES 14 A 197 ASN GLY THR VAL THR ILE THR TYR PRO ASP SER SER THR SEQRES 15 A 197 ASP THR ILE THR ALA ASN ARG VAL VAL LYS ASP LEU ALA SEQRES 16 A 197 SER SER SEQRES 1 B 197 THR ASP THR THR PRO PRO THR ILE THR VAL PRO SER ASP SEQRES 2 B 197 ILE ILE ALA TYR ARG GLY GLU GLU PHE GLU PHE TYR PHE SEQRES 3 B 197 GLU ILE THR ASP ASP SER GLY GLN VAL LYS ASN ILE GLU SEQRES 4 B 197 LEU SER THR PHE GLY LYS PRO LEU GLY LEU ASN TRP LEU SEQRES 5 B 197 GLU TYR SER GLU ASP ASN PHE ASN VAL PRO GLY ASN ALA SEQRES 6 B 197 THR SER ASP ASN PRO LEU ARG VAL ARG VAL HIS GLY THR SEQRES 7 B 197 VAL PRO LEU ASN GLU PRO ILE PRO ALA ASP LYS ASN ARG SEQRES 8 B 197 ALA GLN PHE THR ARG THR ILE ARG ALA TRP ASP ALA ALA SEQRES 9 B 197 GLY ASN VAL SER SER ASN ILE THR PHE VAL ILE LYS TYR SEQRES 10 B 197 ARG ALA GLN THR ASP LYS TYR ASN PRO ALA ASP PRO THR SEQRES 11 B 197 ILE THR TYR VAL ASP ARG LEU SER SER LEU SER PRO SER SEQRES 12 B 197 GLU LYS ASN ALA VAL GLU ALA ALA VAL ARG ALA ALA ASN SEQRES 13 B 197 PRO GLN ILE PRO ALA ALA ALA ARG ILE THR VAL SER ALA SEQRES 14 B 197 ASN GLY THR VAL THR ILE THR TYR PRO ASP SER SER THR SEQRES 15 B 197 ASP THR ILE THR ALA ASN ARG VAL VAL LYS ASP LEU ALA SEQRES 16 B 197 SER SER HET A2G C 1 15 HET GAL C 2 11 HET SIA C 3 20 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET ACT A 507 4 HET ACT A 508 4 HET ACT A 509 4 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET ACT B 505 4 HET ACT B 506 4 HET ACT B 507 4 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 A2G C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 CA 7(CA 2+) FORMUL 7 ACT 6(C2 H3 O2 1-) FORMUL 17 HOH *709(H2 O) HELIX 1 AA1 ASP A 339 ARG A 342 5 4 HELIX 2 AA2 ALA A 370 LYS A 374 5 5 HELIX 3 AA3 SER A 392 ALA A 406 1 15 HELIX 4 AA4 THR A 437 ARG A 440 5 4 HELIX 5 AA5 ASP B 339 ARG B 342 5 4 HELIX 6 AA6 ALA B 370 LYS B 374 5 5 HELIX 7 AA7 SER B 392 ASN B 407 1 16 HELIX 8 AA8 THR B 437 ARG B 440 5 4 SHEET 1 AA1 4 THR A 258 THR A 260 0 SHEET 2 AA1 4 PHE A 273 THR A 280 -1 O GLU A 278 N THR A 260 SHEET 3 AA1 4 LEU A 322 GLY A 328 -1 O VAL A 326 N PHE A 275 SHEET 4 AA1 4 LEU A 303 TYR A 305 -1 N GLU A 304 O HIS A 327 SHEET 1 AA2 4 ILE A 265 TYR A 268 0 SHEET 2 AA2 4 ILE A 362 ARG A 369 1 O LYS A 367 N ALA A 267 SHEET 3 AA2 4 GLN A 344 ASP A 353 -1 N PHE A 345 O ILE A 366 SHEET 4 AA2 4 VAL A 286 SER A 292 -1 N SER A 292 O THR A 348 SHEET 1 AA3 2 THR A 383 VAL A 385 0 SHEET 2 AA3 2 VAL A 442 ASP A 444 1 O LYS A 443 N VAL A 385 SHEET 1 AA4 3 ARG A 415 VAL A 418 0 SHEET 2 AA4 3 VAL A 424 THR A 427 -1 O THR A 427 N ARG A 415 SHEET 3 AA4 3 THR A 433 ILE A 436 -1 O ASP A 434 N ILE A 426 SHEET 1 AA5 4 THR B 258 THR B 260 0 SHEET 2 AA5 4 PHE B 273 THR B 280 -1 O GLU B 278 N THR B 260 SHEET 3 AA5 4 LEU B 322 GLY B 328 -1 O VAL B 326 N PHE B 275 SHEET 4 AA5 4 LEU B 303 TYR B 305 -1 N GLU B 304 O HIS B 327 SHEET 1 AA6 4 ILE B 265 TYR B 268 0 SHEET 2 AA6 4 ILE B 362 ARG B 369 1 O LYS B 367 N ALA B 267 SHEET 3 AA6 4 GLN B 344 ASP B 353 -1 N ARG B 347 O PHE B 364 SHEET 4 AA6 4 VAL B 286 SER B 292 -1 N SER B 292 O THR B 348 SHEET 1 AA7 2 THR B 383 TYR B 384 0 SHEET 2 AA7 2 VAL B 442 LYS B 443 1 O LYS B 443 N THR B 383 SHEET 1 AA8 3 ARG B 415 VAL B 418 0 SHEET 2 AA8 3 VAL B 424 THR B 427 -1 O THR B 425 N THR B 417 SHEET 3 AA8 3 THR B 433 ILE B 436 -1 O ASP B 434 N ILE B 426 LINK O3 A2G C 1 C1 GAL C 2 1555 1555 1.44 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.46 LINK OD1 ASP A 253 CA CA A 505 1555 1555 2.38 LINK OD2 ASP A 253 CA CA A 505 1555 1555 2.37 LINK O THR A 255 CA CA A 505 1555 1555 2.36 LINK OD1 ASP A 281 CA CA A 505 1555 1555 2.38 LINK OD2 ASP A 281 CA CA A 505 1555 1555 2.37 LINK OD1 ASP A 282 CA CA A 505 1555 1555 2.35 LINK OD2 ASP A 353 CA CA A 505 1555 1555 2.36 LINK O THR A 372 CA CA A 506 1555 1555 2.37 LINK OG1 THR A 372 CA CA A 506 1555 1555 2.39 LINK O TYR A 375 CA CA A 506 1555 1555 2.26 LINK OE1 GLU A 400 CA CA A 504 1555 1555 2.38 LINK OE2 GLU A 400 CA CA A 504 1555 1555 2.38 LINK OD1 ASP A 434 CA CA A 506 1555 1555 2.38 LINK OD2 ASP A 434 CA CA A 506 1555 1555 2.35 LINK CA CA A 504 O HOH A 666 1555 1555 2.55 LINK CA CA A 504 OE1 GLU B 400 1555 1555 2.38 LINK CA CA A 504 OE2 GLU B 400 1555 1555 2.39 LINK CA CA A 504 O HOH B 658 1555 1555 2.34 LINK CA CA A 504 O HOH B 710 1555 1555 2.57 LINK CA CA A 504 O HOH B 717 1555 1555 2.45 LINK CA CA A 506 O ACT A 509 1555 1555 2.37 LINK CA CA A 506 OXT ACT A 509 1555 1555 2.38 LINK CA CA A 506 O HOH A 704 1555 1555 2.52 LINK CA CA A 506 O HOH A 779 1555 1555 2.61 LINK OD1 ASP B 253 CA CA B 501 1555 1555 2.37 LINK OD2 ASP B 253 CA CA B 501 1555 1555 2.36 LINK O THR B 255 CA CA B 501 1555 1555 2.36 LINK OD1 ASP B 281 CA CA B 501 1555 1555 2.37 LINK OD2 ASP B 281 CA CA B 501 1555 1555 2.37 LINK OD1 ASP B 282 CA CA B 501 1555 1555 2.36 LINK OD2 ASP B 353 CA CA B 501 1555 1555 2.36 LINK O THR B 372 CA CA B 503 1555 1555 2.36 LINK OG1 THR B 372 CA CA B 503 1555 1555 2.40 LINK O ASP B 373 CA CA B 504 1555 1555 2.36 LINK O TYR B 375 CA CA B 503 1555 1555 2.27 LINK OD1 ASP B 434 CA CA B 503 1555 1555 2.37 LINK OD2 ASP B 434 CA CA B 503 1555 1555 2.37 LINK CA CA B 502 O ACT B 506 1555 1555 2.38 LINK CA CA B 502 O HOH B 628 1555 1555 2.68 LINK CA CA B 502 O HOH B 682 1555 1555 2.23 LINK CA CA B 502 O HOH B 825 1555 1555 2.18 LINK CA CA B 503 O HOH B 696 1555 1555 2.34 LINK CA CA B 503 O HOH B 703 1555 1555 2.60 LINK CA CA B 503 O HOH B 777 1555 1555 2.58 LINK CA CA B 504 O HOH B 639 1555 2656 2.48 LINK CA CA B 504 O HOH B 699 1555 1555 2.35 LINK CA CA B 504 O HOH B 742 1555 1555 2.51 LINK CA CA B 504 O HOH B 816 1555 1555 2.22 LINK CA CA B 504 O HOH B 818 1555 1555 2.67 LINK CA CA B 504 O HOH B 833 1555 2656 2.48 LINK CA CA B 504 O HOH B 936 1555 1555 2.58 CRYST1 173.911 46.766 65.169 90.00 102.73 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005750 0.000000 0.001300 0.00000 SCALE2 0.000000 0.021383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015732 0.00000