HEADER IMMUNE SYSTEM 01-MAR-16 5IJD TITLE THE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LIPID A COMPLEX CAVEAT 5IJD NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 NAG G 1 HAS WRONG CAVEAT 2 5IJD CHIRALITY AT ATOM C1 NAG H 2 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 5IJD NAG J 1 HAS WRONG CHIRALITY AT ATOM C1 NAG J 2 HAS WRONG CAVEAT 4 5IJD CHIRALITY AT ATOM C1 NAG K 2 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 5 5IJD NAG B 705 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B COMPND 3 CHIMERA; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TLR4 ECTODOMAIN (UNP RESIDUES 26-544) + VLRB (UNP RESIDUES COMPND 6 126-200); COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 96; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: UNP RESIDUES 19-160; COMPND 12 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 10090, 7764; SOURCE 5 GENE: TLR4, LPS, VLRB; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: LY96, ESOP1, MD2; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS IMMUNE RESPONSE, PROTEIN COMPLEX, NATURAL AGONIST, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.SURAKATTULA,H.HUANG, AUTHOR 2 H.SHI,J.H.CHOI,K.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,H.ZHANG,D.L.BOGER, AUTHOR 3 B.BEUTLER REVDAT 5 30-OCT-24 5IJD 1 REMARK REVDAT 4 03-APR-24 5IJD 1 HETSYN REVDAT 3 29-JUL-20 5IJD 1 CAVEAT COMPND JRNL REMARK REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 04-MAY-16 5IJD 1 JRNL REVDAT 1 27-APR-16 5IJD 0 SPRSDE 27-APR-16 5IJD 5HG6 JRNL AUTH Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.M.SURAKATTULA, JRNL AUTH 2 H.HUANG,H.SHI,J.H.CHOI,K.W.WANG,E.M.MORESCO,M.BERGER,X.ZHAN, JRNL AUTH 3 H.ZHANG,D.L.BOGER,B.BEUTLER JRNL TITL TLR4/MD-2 ACTIVATION BY A SYNTHETIC AGONIST WITH NO JRNL TITL 2 SIMILARITY TO LPS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E884 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 26831104 JRNL DOI 10.1073/PNAS.1525639113 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 77.2 REMARK 3 NUMBER OF REFLECTIONS : 52860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 508 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.842 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12451 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 11856 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16846 ; 1.800 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 27316 ; 2.739 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1454 ; 7.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 545 ;36.606 ;24.716 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2110 ;18.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;20.010 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1944 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13565 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2822 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5822 ; 2.814 ; 4.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5821 ; 2.813 ; 4.197 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7271 ; 4.703 ; 6.286 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7272 ; 4.703 ; 6.287 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6629 ; 2.795 ; 4.639 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6630 ; 2.794 ; 4.639 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9575 ; 4.808 ; 6.861 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14190 ; 8.016 ;34.585 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14161 ; 8.009 ;34.611 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5IJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M LITHIUM REMARK 280 CHLORIDE, 14% PEG8000, 2.5% PEG400, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.86850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E, F, G, H, I, J, REMARK 350 AND CHAINS: K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B, H, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 26 REMARK 465 PRO A 27 REMARK 465 CYS A 28 REMARK 465 THR A 619 REMARK 465 GLU C 19 REMARK 465 ARG C 157 REMARK 465 ASP C 158 REMARK 465 VAL C 159 REMARK 465 ASN C 160 REMARK 465 LYS C 161 REMARK 465 GLY C 162 REMARK 465 GLU C 163 REMARK 465 ASN C 164 REMARK 465 LEU C 165 REMARK 465 TYR C 166 REMARK 465 PHE C 167 REMARK 465 GLN C 168 REMARK 465 GLU D 19 REMARK 465 ARG D 157 REMARK 465 ASP D 158 REMARK 465 VAL D 159 REMARK 465 ASN D 160 REMARK 465 LYS D 161 REMARK 465 GLY D 162 REMARK 465 GLU D 163 REMARK 465 ASN D 164 REMARK 465 LEU D 165 REMARK 465 TYR D 166 REMARK 465 PHE D 167 REMARK 465 GLN D 168 REMARK 465 ASN B 26 REMARK 465 THR B 619 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O44 LP4 D 804 C1 DAO D 806 1.35 REMARK 500 O43 LP4 C 204 C1 MYR C 207 1.35 REMARK 500 O43 LP4 D 804 C1 MYR D 807 1.37 REMARK 500 O44 LP4 C 204 C1 DAO C 206 1.38 REMARK 500 C1 LP4 C 204 O6 LP5 C 205 1.62 REMARK 500 C1 LP4 D 804 O6 LP5 D 805 1.64 REMARK 500 O5 LP4 C 204 O6 LP5 C 205 1.96 REMARK 500 O SER A 117 N GLY A 119 2.04 REMARK 500 O43 LP4 C 204 O1 MYR C 207 2.07 REMARK 500 ND1 HIS B 255 OD2 ASP B 285 2.12 REMARK 500 O ASN A 479 O HOH A 801 2.13 REMARK 500 O PRO C 127 OH TYR C 131 2.15 REMARK 500 ND2 ASN B 492 O5 NAG B 705 2.15 REMARK 500 O PRO D 127 OH TYR D 131 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 564 CD1 TYR B 542 1655 2.15 REMARK 500 O GLN A 540 NH2 ARG B 519 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 VAL B 32 N - CA - C ANGL. DEV. = -23.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 33 104.99 -55.34 REMARK 500 MET A 40 152.76 -44.83 REMARK 500 ASP A 41 65.99 27.73 REMARK 500 LEU A 65 -49.62 -132.02 REMARK 500 LYS A 66 -28.36 66.96 REMARK 500 PHE A 73 77.69 -150.18 REMARK 500 PRO A 112 42.91 -73.44 REMARK 500 PRO A 118 47.45 -48.08 REMARK 500 PHE A 121 59.26 -94.59 REMARK 500 THR A 125 -32.48 -38.80 REMARK 500 LYS A 136 -9.12 62.74 REMARK 500 ILE A 145 51.48 -118.17 REMARK 500 ILE A 161 124.18 -39.19 REMARK 500 LYS A 165 115.08 -32.44 REMARK 500 PRO A 167 160.46 -46.83 REMARK 500 THR A 174 1.29 -65.97 REMARK 500 ASN A 200 51.68 -163.52 REMARK 500 PRO A 201 3.84 -68.54 REMARK 500 LEU A 232 74.65 -117.20 REMARK 500 ASN A 248 35.26 -93.69 REMARK 500 ALA A 250 133.80 -36.26 REMARK 500 ASP A 264 31.62 -92.43 REMARK 500 ILE A 275 -2.91 -58.19 REMARK 500 GLU A 277 138.93 -39.25 REMARK 500 THR A 290 -168.50 -126.76 REMARK 500 ALA A 314 113.17 -160.75 REMARK 500 SER A 317 37.37 -83.85 REMARK 500 GLU A 322 -73.89 -115.39 REMARK 500 LYS A 329 37.88 -98.83 REMARK 500 CYS A 338 -166.25 -104.92 REMARK 500 LEU A 348 105.48 -50.08 REMARK 500 PHE A 385 84.91 -163.87 REMARK 500 SER A 413 -32.71 -133.04 REMARK 500 ASN A 415 55.57 -111.57 REMARK 500 GLN A 428 123.85 -26.40 REMARK 500 TYR A 454 29.31 49.88 REMARK 500 LEU A 468 58.40 -91.07 REMARK 500 MET A 476 44.77 -145.05 REMARK 500 ASN A 479 -147.22 -117.20 REMARK 500 GLN A 505 27.64 49.89 REMARK 500 TRP A 511 -71.02 -65.50 REMARK 500 GLN A 540 -3.40 60.97 REMARK 500 ASN A 552 -158.81 -103.95 REMARK 500 SER A 556 -178.29 -170.44 REMARK 500 CYS A 580 31.68 -94.40 REMARK 500 SER C 28 -9.10 -59.96 REMARK 500 ASP C 29 -1.68 -147.94 REMARK 500 SER C 33 153.66 178.89 REMARK 500 PHE C 42 128.68 -27.16 REMARK 500 PRO C 50 -176.84 -67.38 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 278 LEU A 279 143.84 REMARK 500 GLY A 361 SER A 362 143.05 REMARK 500 GLY B 361 SER B 362 149.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 132 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 329 DISTANCE = 6.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LP4 C 204 REMARK 610 DAO C 206 REMARK 610 MYR C 207 REMARK 610 LP4 D 804 REMARK 610 DAO D 806 REMARK 610 MYR D 807 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LJB RELATED DB: PDB REMARK 900 RELATED ID: 5LJC RELATED DB: PDB DBREF 5IJD A 26 544 UNP Q9QUK6 TLR4_MOUSE 26 544 DBREF 5IJD A 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 DBREF 5IJD C 19 160 UNP Q9JHF9 LY96_MOUSE 19 160 DBREF 5IJD D 19 160 UNP Q9JHF9 LY96_MOUSE 19 160 DBREF 5IJD B 26 544 UNP Q9QUK6 TLR4_MOUSE 26 544 DBREF 5IJD B 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200 SEQADV 5IJD LYS C 161 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLY C 162 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLU C 163 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD ASN C 164 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD LEU C 165 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD TYR C 166 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD PHE C 167 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLN C 168 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD LYS D 161 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLY D 162 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLU D 163 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD ASN D 164 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD LEU D 165 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD TYR D 166 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD PHE D 167 UNP Q9JHF9 CLONING ARTIFACT SEQADV 5IJD GLN D 168 UNP Q9JHF9 CLONING ARTIFACT SEQRES 1 A 594 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 A 594 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE SEQRES 3 A 594 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO SEQRES 4 A 594 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER SEQRES 5 A 594 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU SEQRES 6 A 594 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SEQRES 7 A 594 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SEQRES 8 A 594 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN SEQRES 9 A 594 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER SEQRES 10 A 594 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN SEQRES 11 A 594 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA SEQRES 12 A 594 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SEQRES 13 A 594 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU SEQRES 14 A 594 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU SEQRES 15 A 594 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN SEQRES 16 A 594 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG SEQRES 17 A 594 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU SEQRES 18 A 594 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU SEQRES 19 A 594 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU SEQRES 20 A 594 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP SEQRES 21 A 594 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP SEQRES 22 A 594 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SEQRES 23 A 594 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL SEQRES 24 A 594 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG SEQRES 25 A 594 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE SEQRES 26 A 594 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SEQRES 27 A 594 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU SEQRES 28 A 594 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SEQRES 29 A 594 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU SEQRES 30 A 594 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN SEQRES 31 A 594 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN SEQRES 32 A 594 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE SEQRES 33 A 594 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR SEQRES 34 A 594 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY SEQRES 35 A 594 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER SEQRES 36 A 594 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR SEQRES 37 A 594 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU SEQRES 38 A 594 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG SEQRES 39 A 594 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE SEQRES 40 A 594 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS SEQRES 41 A 594 GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO SEQRES 42 A 594 ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE SEQRES 43 A 594 TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG SEQRES 44 A 594 ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN SEQRES 45 A 594 LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS SEQRES 46 A 594 PRO VAL ARG SER ILE ILE CYS PRO THR SEQRES 1 C 150 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE SEQRES 2 C 150 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SEQRES 3 C 150 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR SEQRES 4 C 150 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN SEQRES 5 C 150 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SEQRES 6 C 150 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS SEQRES 7 C 150 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS SEQRES 8 C 150 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU SEQRES 9 C 150 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA SEQRES 10 C 150 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS SEQRES 11 C 150 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN LYS SEQRES 12 C 150 GLY GLU ASN LEU TYR PHE GLN SEQRES 1 D 150 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE SEQRES 2 D 150 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE SEQRES 3 D 150 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR SEQRES 4 D 150 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN SEQRES 5 D 150 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN SEQRES 6 D 150 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS SEQRES 7 D 150 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS SEQRES 8 D 150 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU SEQRES 9 D 150 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA SEQRES 10 D 150 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS SEQRES 11 D 150 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN LYS SEQRES 12 D 150 GLY GLU ASN LEU TYR PHE GLN SEQRES 1 B 594 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 B 594 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE SEQRES 3 B 594 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO SEQRES 4 B 594 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER SEQRES 5 B 594 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU SEQRES 6 B 594 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU SEQRES 7 B 594 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE SEQRES 8 B 594 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN SEQRES 9 B 594 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER SEQRES 10 B 594 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN SEQRES 11 B 594 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA SEQRES 12 B 594 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU SEQRES 13 B 594 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU SEQRES 14 B 594 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU SEQRES 15 B 594 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN SEQRES 16 B 594 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG SEQRES 17 B 594 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU SEQRES 18 B 594 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU SEQRES 19 B 594 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU SEQRES 20 B 594 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP SEQRES 21 B 594 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP SEQRES 22 B 594 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET SEQRES 23 B 594 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL SEQRES 24 B 594 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG SEQRES 25 B 594 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE SEQRES 26 B 594 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE SEQRES 27 B 594 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU SEQRES 28 B 594 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS SEQRES 29 B 594 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU SEQRES 30 B 594 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN SEQRES 31 B 594 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN SEQRES 32 B 594 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE SEQRES 33 B 594 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR SEQRES 34 B 594 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY SEQRES 35 B 594 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER SEQRES 36 B 594 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR SEQRES 37 B 594 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU SEQRES 38 B 594 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG SEQRES 39 B 594 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE SEQRES 40 B 594 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS SEQRES 41 B 594 GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO SEQRES 42 B 594 ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE SEQRES 43 B 594 TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG SEQRES 44 B 594 ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN SEQRES 45 B 594 LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS SEQRES 46 B 594 PRO VAL ARG SER ILE ILE CYS PRO THR MODRES 5IJD NAG E 1 NAG -D MODRES 5IJD NAG E 2 NAG -D MODRES 5IJD NAG A 703 NAG -D MODRES 5IJD NAG A 704 NAG -D MODRES 5IJD NAG F 1 NAG -D MODRES 5IJD NAG F 2 NAG -D MODRES 5IJD NAG C 201 NAG -D MODRES 5IJD NAG G 1 NAG -D MODRES 5IJD NAG G 2 NAG -D MODRES 5IJD NAG H 1 NAG -D MODRES 5IJD NAG H 2 NAG -D MODRES 5IJD NAG D 803 NAG -D MODRES 5IJD NAG I 1 NAG -D MODRES 5IJD NAG I 2 NAG -D MODRES 5IJD NAG J 1 NAG -D MODRES 5IJD NAG J 2 NAG -D MODRES 5IJD NAG B 705 NAG -D MODRES 5IJD NAG K 1 NAG -D MODRES 5IJD NAG K 2 NAG -D HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG A 703 14 HET NAG A 704 14 HET NAG C 201 14 HET LP4 C 204 45 HET LP5 C 205 48 HET DAO C 206 13 HET MYR C 207 15 HET NAG D 803 14 HET LP4 D 804 45 HET LP5 D 805 48 HET DAO D 806 13 HET MYR D 807 15 HET NAG B 705 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3- HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D- HETNAM 3 LP4 GLUCOPYRANOSE HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5- HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY) HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE HETNAM DAO LAURIC ACID HETNAM MYR MYRISTIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 19(C8 H15 N O6) FORMUL 15 LP4 2(C34 H66 N O12 P) FORMUL 16 LP5 2(C34 H66 N O12 P) FORMUL 17 DAO 2(C12 H24 O2) FORMUL 18 MYR 2(C14 H28 O2) FORMUL 25 HOH *232(H2 O) HELIX 1 AA1 ALA A 168 ASN A 172 5 5 HELIX 2 AA2 LEU A 194 GLU A 199 1 6 HELIX 3 AA3 SER A 238 ASN A 248 1 11 HELIX 4 AA4 GLU A 272 GLU A 277 5 6 HELIX 5 AA5 SER A 296 ALA A 306 5 11 HELIX 6 AA6 SER A 390 GLY A 395 1 6 HELIX 7 AA7 PHE A 461 LEU A 466 5 6 HELIX 8 AA8 ILE A 585 ASN A 595 1 11 HELIX 9 AA9 PRO A 611 ILE A 615 5 5 HELIX 10 AB1 TYR C 102 ALA C 107 5 6 HELIX 11 AB2 TYR D 102 ALA D 107 5 6 HELIX 12 AB3 PRO B 167 ASN B 172 5 6 HELIX 13 AB4 SER B 238 ASN B 248 1 11 HELIX 14 AB5 GLU B 272 GLU B 277 5 6 HELIX 15 AB6 ASP B 297 PHE B 302 1 6 HELIX 16 AB7 HIS B 303 ALA B 306 5 4 HELIX 17 AB8 SER B 390 GLY B 395 1 6 HELIX 18 AB9 ILE B 585 SER B 596 1 12 SHEET 1 AA125 GLU A 30 VAL A 32 0 SHEET 2 AA125 THR A 36 GLN A 38 -1 O THR A 36 N VAL A 31 SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37 SHEET 4 AA125 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58 SHEET 5 AA125 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82 SHEET 6 AA125 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106 SHEET 7 AA125 LYS A 153 ASN A 155 1 O LYS A 153 N LEU A 130 SHEET 8 AA125 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154 SHEET 9 AA125 LEU A 207 ASP A 208 1 O ASP A 208 N VAL A 179 SHEET 10 AA125 LYS A 226 ARG A 233 1 O THR A 231 N LEU A 207 SHEET 11 AA125 HIS A 253 GLY A 260 1 O HIS A 253 N LEU A 227 SHEET 12 AA125 THR A 283 LEU A 289 1 O THR A 283 N VAL A 254 SHEET 13 AA125 ALA A 310 ALA A 314 1 O SER A 312 N LEU A 289 SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313 SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335 SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356 SHEET 17 AA125 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376 SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402 SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425 SHEET 20 AA125 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450 SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474 SHEET 22 AA125 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499 SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523 SHEET 24 AA125 LYS A 570 TRP A 572 1 O LYS A 570 N LEU A 547 SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571 SHEET 1 AA2 2 ILE A 67 LEU A 68 0 SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68 SHEET 1 AA3 2 THR A 188 ILE A 189 0 SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189 SHEET 1 AA4 3 PHE A 385 CYS A 388 0 SHEET 2 AA4 3 ALA A 409 MET A 412 1 O ILE A 411 N CYS A 388 SHEET 3 AA4 3 THR A 431 LYS A 433 1 O LYS A 433 N MET A 412 SHEET 1 AA5 2 LYS A 458 ILE A 459 0 SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459 SHEET 1 AA6 2 THR A 485 LEU A 486 0 SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486 SHEET 1 AA7 6 TRP C 23 ASN C 26 0 SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147 SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82 SHEET 1 AA8 6 TRP C 23 ASN C 26 0 SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25 SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35 SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147 SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138 SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78 SHEET 1 AA9 3 ILE C 44 GLU C 49 0 SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O HIS C 62 N SER C 47 SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O THR C 115 N VAL C 63 SHEET 1 AB1 6 GLN D 21 ASN D 26 0 SHEET 2 AB1 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22 SHEET 3 AB1 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB1 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153 SHEET 5 AB1 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB1 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82 SHEET 1 AB2 6 GLN D 21 ASN D 26 0 SHEET 2 AB2 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22 SHEET 3 AB2 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33 SHEET 4 AB2 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153 SHEET 5 AB2 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138 SHEET 6 AB2 6 ARG D 90 VAL D 93 -1 O ARG D 90 N LEU D 78 SHEET 1 AB3 3 SER D 45 SER D 47 0 SHEET 2 AB3 3 GLY D 56 PHE D 65 -1 O HIS D 62 N SER D 47 SHEET 3 AB3 3 VAL D 113 GLU D 122 -1 O PHE D 121 N THR D 57 SHEET 1 AB410 ASN B 57 ASP B 59 0 SHEET 2 AB410 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58 SHEET 3 AB410 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82 SHEET 4 AB410 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106 SHEET 5 AB410 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130 SHEET 6 AB410 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154 SHEET 7 AB410 LEU B 205 ASP B 208 1 O SER B 206 N VAL B 179 SHEET 8 AB410 LYS B 226 ARG B 233 1 O HIS B 228 N LEU B 205 SHEET 9 AB410 HIS B 253 GLY B 260 1 O ARG B 256 N HIS B 228 SHEET 10 AB410 THR B 283 LEU B 289 1 O THR B 283 N VAL B 254 SHEET 1 AB5 2 THR B 188 ILE B 189 0 SHEET 2 AB5 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189 SHEET 1 AB613 MET B 311 ALA B 314 0 SHEET 2 AB613 SER B 332 ILE B 336 1 O SER B 334 N LEU B 313 SHEET 3 AB613 SER B 353 THR B 357 1 O THR B 355 N ILE B 335 SHEET 4 AB613 TYR B 375 ASP B 377 1 O TYR B 375 N LEU B 354 SHEET 5 AB613 HIS B 401 ASP B 403 1 O HIS B 401 N LEU B 376 SHEET 6 AB613 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402 SHEET 7 AB613 TYR B 449 ASP B 451 1 O TYR B 449 N LEU B 425 SHEET 8 AB613 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450 SHEET 9 AB613 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474 SHEET 10 AB613 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499 SHEET 11 AB613 GLU B 546 ALA B 548 1 O GLU B 546 N LEU B 523 SHEET 12 AB613 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547 SHEET 13 AB613 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571 SHEET 1 AB7 3 PHE B 385 CYS B 388 0 SHEET 2 AB7 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385 SHEET 3 AB7 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410 SHEET 1 AB8 2 LYS B 458 ILE B 459 0 SHEET 2 AB8 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459 SHEET 1 AB9 2 THR B 485 LEU B 486 0 SHEET 2 AB9 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486 SSBOND 1 CYS A 280 CYS A 304 1555 1555 2.59 SSBOND 2 CYS A 388 CYS A 389 1555 1555 2.03 SSBOND 3 CYS A 580 CYS A 605 1555 1555 2.02 SSBOND 4 CYS A 582 CYS A 617 1555 1555 2.07 SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.07 SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.09 SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.02 SSBOND 8 CYS D 25 CYS D 51 1555 1555 2.04 SSBOND 9 CYS D 37 CYS D 148 1555 1555 2.09 SSBOND 10 CYS D 95 CYS D 105 1555 1555 2.05 SSBOND 11 CYS B 28 CYS B 39 1555 1555 2.26 SSBOND 12 CYS B 280 CYS B 304 1555 1555 2.04 SSBOND 13 CYS B 388 CYS B 389 1555 1555 2.04 SSBOND 14 CYS B 580 CYS B 605 1555 1555 2.05 SSBOND 15 CYS B 582 CYS B 617 1555 1555 2.06 LINK ND2 ASN A 204 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 307 C1 NAG A 703 1555 1555 1.47 LINK ND2 ASN A 492 C1 NAG A 704 1555 1555 1.47 LINK ND2 ASN A 524 C1 NAG F 1 1555 1555 1.47 LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.46 LINK ND2 ASN C 150 C1 NAG G 1 1555 1555 1.43 LINK ND2 ASN D 114 C1 NAG D 803 1555 1555 1.48 LINK ND2 ASN D 150 C1 NAG H 1 1555 1555 1.46 LINK ND2 ASN B 204 C1 NAG I 1 1555 1555 1.47 LINK ND2 ASN B 307 C1 NAG J 1 1555 1555 1.45 LINK ND2 ASN B 492 C1 NAG B 705 1555 1555 1.47 LINK ND2 ASN B 524 C1 NAG K 1 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.42 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.47 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.45 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.47 CISPEP 1 HIS A 98 GLY A 99 0 1.04 CISPEP 2 CYS A 388 CYS A 389 0 -22.94 CISPEP 3 CYS A 582 PRO A 583 0 4.46 CISPEP 4 GLU C 49 PRO C 50 0 -5.58 CISPEP 5 GLU D 49 PRO D 50 0 -7.10 CISPEP 6 CYS B 388 CYS B 389 0 -9.12 CISPEP 7 CYS B 582 PRO B 583 0 6.32 CRYST1 66.843 145.737 136.195 90.00 100.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014960 0.000000 0.002818 0.00000 SCALE2 0.000000 0.006862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007472 0.00000