HEADER IMMUNE SYSTEM 01-MAR-16 5IJD
TITLE THE CRYSTAL STRUCTURE OF MOUSE TLR4/MD-2/LIPID A COMPLEX
CAVEAT 5IJD NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 NAG G 1 HAS WRONG
CAVEAT 2 5IJD CHIRALITY AT ATOM C1 NAG H 2 HAS WRONG CHIRALITY AT ATOM C1
CAVEAT 3 5IJD NAG J 1 HAS WRONG CHIRALITY AT ATOM C1 NAG J 2 HAS WRONG
CAVEAT 4 5IJD CHIRALITY AT ATOM C1 NAG K 2 HAS WRONG CHIRALITY AT ATOM C1
CAVEAT 5 5IJD NAG B 705 HAS WRONG CHIRALITY AT ATOM C1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B
COMPND 3 CHIMERA;
COMPND 4 CHAIN: A, B;
COMPND 5 FRAGMENT: TLR4 ECTODOMAIN (UNP RESIDUES 26-544) + VLRB (UNP RESIDUES
COMPND 6 126-200);
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: LYMPHOCYTE ANTIGEN 96;
COMPND 10 CHAIN: C, D;
COMPND 11 FRAGMENT: UNP RESIDUES 19-160;
COMPND 12 SYNONYM: LY-96, ESOP-1, PROTEIN MD-2;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, EPTATRETUS BURGERI;
SOURCE 3 ORGANISM_COMMON: MOUSE, INSHORE HAGFISH;
SOURCE 4 ORGANISM_TAXID: 10090, 7764;
SOURCE 5 GENE: TLR4, LPS, VLRB;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 11 ORGANISM_COMMON: MOUSE;
SOURCE 12 ORGANISM_TAXID: 10090;
SOURCE 13 GENE: LY96, ESOP1, MD2;
SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM;
SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS IMMUNE RESPONSE, PROTEIN COMPLEX, NATURAL AGONIST, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.SURAKATTULA,H.HUANG,
AUTHOR 2 H.SHI,J.H.CHOI,K.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,H.ZHANG,D.L.BOGER,
AUTHOR 3 B.BEUTLER
REVDAT 5 30-OCT-24 5IJD 1 REMARK
REVDAT 4 03-APR-24 5IJD 1 HETSYN
REVDAT 3 29-JUL-20 5IJD 1 CAVEAT COMPND JRNL REMARK
REVDAT 3 2 1 HETNAM LINK SITE ATOM
REVDAT 2 04-MAY-16 5IJD 1 JRNL
REVDAT 1 27-APR-16 5IJD 0
SPRSDE 27-APR-16 5IJD 5HG6
JRNL AUTH Y.WANG,L.SU,M.D.MORIN,B.T.JONES,L.R.WHITBY,M.M.SURAKATTULA,
JRNL AUTH 2 H.HUANG,H.SHI,J.H.CHOI,K.W.WANG,E.M.MORESCO,M.BERGER,X.ZHAN,
JRNL AUTH 3 H.ZHANG,D.L.BOGER,B.BEUTLER
JRNL TITL TLR4/MD-2 ACTIVATION BY A SYNTHETIC AGONIST WITH NO
JRNL TITL 2 SIMILARITY TO LPS.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 E884 2016
JRNL REFN ESSN 1091-6490
JRNL PMID 26831104
JRNL DOI 10.1073/PNAS.1525639113
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0049
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 77.2
REMARK 3 NUMBER OF REFLECTIONS : 52860
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.217
REMARK 3 R VALUE (WORKING SET) : 0.215
REMARK 3 FREE R VALUE : 0.285
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600
REMARK 3 FREE R VALUE TEST SET COUNT : 1978
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1411
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.92
REMARK 3 BIN R VALUE (WORKING SET) : 0.3280
REMARK 3 BIN FREE R VALUE SET COUNT : 53
REMARK 3 BIN FREE R VALUE : 0.4050
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 11637
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 508
REMARK 3 SOLVENT ATOMS : 232
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.65
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.81000
REMARK 3 B22 (A**2) : 0.21000
REMARK 3 B33 (A**2) : 0.27000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.82000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 1.232
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.782
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.842
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12451 ; 0.014 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 11856 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16846 ; 1.800 ; 2.001
REMARK 3 BOND ANGLES OTHERS (DEGREES): 27316 ; 2.739 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1454 ; 7.782 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 545 ;36.606 ;24.716
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2110 ;18.137 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;20.010 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1944 ; 0.092 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13565 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 2822 ; 0.006 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5822 ; 2.814 ; 4.197
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5821 ; 2.813 ; 4.197
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7271 ; 4.703 ; 6.286
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7272 ; 4.703 ; 6.287
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6629 ; 2.795 ; 4.639
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6630 ; 2.794 ; 4.639
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9575 ; 4.808 ; 6.861
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14190 ; 8.016 ;34.585
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14161 ; 8.009 ;34.611
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5IJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-16.
REMARK 100 THE DEPOSITION ID IS D_1000218742.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-JUN-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-3000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54848
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 5IJD
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.73
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M LITHIUM
REMARK 280 CHLORIDE, 14% PEG8000, 2.5% PEG400, VAPOR DIFFUSION, HANGING
REMARK 280 DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.86850
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 20200 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 60170 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 48.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E, F, G, H, I, J,
REMARK 350 AND CHAINS: K
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, G
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8480 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B, H, I, J, K
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASN A 26
REMARK 465 PRO A 27
REMARK 465 CYS A 28
REMARK 465 THR A 619
REMARK 465 GLU C 19
REMARK 465 ARG C 157
REMARK 465 ASP C 158
REMARK 465 VAL C 159
REMARK 465 ASN C 160
REMARK 465 LYS C 161
REMARK 465 GLY C 162
REMARK 465 GLU C 163
REMARK 465 ASN C 164
REMARK 465 LEU C 165
REMARK 465 TYR C 166
REMARK 465 PHE C 167
REMARK 465 GLN C 168
REMARK 465 GLU D 19
REMARK 465 ARG D 157
REMARK 465 ASP D 158
REMARK 465 VAL D 159
REMARK 465 ASN D 160
REMARK 465 LYS D 161
REMARK 465 GLY D 162
REMARK 465 GLU D 163
REMARK 465 ASN D 164
REMARK 465 LEU D 165
REMARK 465 TYR D 166
REMARK 465 PHE D 167
REMARK 465 GLN D 168
REMARK 465 ASN B 26
REMARK 465 THR B 619
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O44 LP4 D 804 C1 DAO D 806 1.35
REMARK 500 O43 LP4 C 204 C1 MYR C 207 1.35
REMARK 500 O43 LP4 D 804 C1 MYR D 807 1.37
REMARK 500 O44 LP4 C 204 C1 DAO C 206 1.38
REMARK 500 C1 LP4 C 204 O6 LP5 C 205 1.62
REMARK 500 C1 LP4 D 804 O6 LP5 D 805 1.64
REMARK 500 O5 LP4 C 204 O6 LP5 C 205 1.96
REMARK 500 O SER A 117 N GLY A 119 2.04
REMARK 500 O43 LP4 C 204 O1 MYR C 207 2.07
REMARK 500 ND1 HIS B 255 OD2 ASP B 285 2.12
REMARK 500 O ASN A 479 O HOH A 801 2.13
REMARK 500 O PRO C 127 OH TYR C 131 2.15
REMARK 500 ND2 ASN B 492 O5 NAG B 705 2.15
REMARK 500 O PRO D 127 OH TYR D 131 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 NH1 ARG A 564 CD1 TYR B 542 1655 2.15
REMARK 500 O GLN A 540 NH2 ARG B 519 1655 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES
REMARK 500 VAL B 32 N - CA - C ANGL. DEV. = -23.1 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 33 104.99 -55.34
REMARK 500 MET A 40 152.76 -44.83
REMARK 500 ASP A 41 65.99 27.73
REMARK 500 LEU A 65 -49.62 -132.02
REMARK 500 LYS A 66 -28.36 66.96
REMARK 500 PHE A 73 77.69 -150.18
REMARK 500 PRO A 112 42.91 -73.44
REMARK 500 PRO A 118 47.45 -48.08
REMARK 500 PHE A 121 59.26 -94.59
REMARK 500 THR A 125 -32.48 -38.80
REMARK 500 LYS A 136 -9.12 62.74
REMARK 500 ILE A 145 51.48 -118.17
REMARK 500 ILE A 161 124.18 -39.19
REMARK 500 LYS A 165 115.08 -32.44
REMARK 500 PRO A 167 160.46 -46.83
REMARK 500 THR A 174 1.29 -65.97
REMARK 500 ASN A 200 51.68 -163.52
REMARK 500 PRO A 201 3.84 -68.54
REMARK 500 LEU A 232 74.65 -117.20
REMARK 500 ASN A 248 35.26 -93.69
REMARK 500 ALA A 250 133.80 -36.26
REMARK 500 ASP A 264 31.62 -92.43
REMARK 500 ILE A 275 -2.91 -58.19
REMARK 500 GLU A 277 138.93 -39.25
REMARK 500 THR A 290 -168.50 -126.76
REMARK 500 ALA A 314 113.17 -160.75
REMARK 500 SER A 317 37.37 -83.85
REMARK 500 GLU A 322 -73.89 -115.39
REMARK 500 LYS A 329 37.88 -98.83
REMARK 500 CYS A 338 -166.25 -104.92
REMARK 500 LEU A 348 105.48 -50.08
REMARK 500 PHE A 385 84.91 -163.87
REMARK 500 SER A 413 -32.71 -133.04
REMARK 500 ASN A 415 55.57 -111.57
REMARK 500 GLN A 428 123.85 -26.40
REMARK 500 TYR A 454 29.31 49.88
REMARK 500 LEU A 468 58.40 -91.07
REMARK 500 MET A 476 44.77 -145.05
REMARK 500 ASN A 479 -147.22 -117.20
REMARK 500 GLN A 505 27.64 49.89
REMARK 500 TRP A 511 -71.02 -65.50
REMARK 500 GLN A 540 -3.40 60.97
REMARK 500 ASN A 552 -158.81 -103.95
REMARK 500 SER A 556 -178.29 -170.44
REMARK 500 CYS A 580 31.68 -94.40
REMARK 500 SER C 28 -9.10 -59.96
REMARK 500 ASP C 29 -1.68 -147.94
REMARK 500 SER C 33 153.66 178.89
REMARK 500 PHE C 42 128.68 -27.16
REMARK 500 PRO C 50 -176.84 -67.38
REMARK 500
REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 GLY A 278 LEU A 279 143.84
REMARK 500 GLY A 361 SER A 362 143.05
REMARK 500 GLY B 361 SER B 362 149.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG C 132 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH C 329 DISTANCE = 6.26 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 LP4 C 204
REMARK 610 DAO C 206
REMARK 610 MYR C 207
REMARK 610 LP4 D 804
REMARK 610 DAO D 806
REMARK 610 MYR D 807
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5LJB RELATED DB: PDB
REMARK 900 RELATED ID: 5LJC RELATED DB: PDB
DBREF 5IJD A 26 544 UNP Q9QUK6 TLR4_MOUSE 26 544
DBREF 5IJD A 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200
DBREF 5IJD C 19 160 UNP Q9JHF9 LY96_MOUSE 19 160
DBREF 5IJD D 19 160 UNP Q9JHF9 LY96_MOUSE 19 160
DBREF 5IJD B 26 544 UNP Q9QUK6 TLR4_MOUSE 26 544
DBREF 5IJD B 545 619 UNP Q4G1L2 Q4G1L2_EPTBU 126 200
SEQADV 5IJD LYS C 161 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLY C 162 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLU C 163 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD ASN C 164 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD LEU C 165 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD TYR C 166 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD PHE C 167 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLN C 168 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD LYS D 161 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLY D 162 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLU D 163 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD ASN D 164 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD LEU D 165 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD TYR D 166 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD PHE D 167 UNP Q9JHF9 CLONING ARTIFACT
SEQADV 5IJD GLN D 168 UNP Q9JHF9 CLONING ARTIFACT
SEQRES 1 A 594 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN
SEQRES 2 A 594 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE
SEQRES 3 A 594 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO
SEQRES 4 A 594 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER
SEQRES 5 A 594 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU
SEQRES 6 A 594 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU
SEQRES 7 A 594 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE
SEQRES 8 A 594 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN
SEQRES 9 A 594 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER
SEQRES 10 A 594 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN
SEQRES 11 A 594 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA
SEQRES 12 A 594 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU
SEQRES 13 A 594 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU
SEQRES 14 A 594 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU
SEQRES 15 A 594 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN
SEQRES 16 A 594 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG
SEQRES 17 A 594 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU
SEQRES 18 A 594 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU
SEQRES 19 A 594 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU
SEQRES 20 A 594 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP
SEQRES 21 A 594 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP
SEQRES 22 A 594 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET
SEQRES 23 A 594 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL
SEQRES 24 A 594 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG
SEQRES 25 A 594 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE
SEQRES 26 A 594 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE
SEQRES 27 A 594 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU
SEQRES 28 A 594 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS
SEQRES 29 A 594 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU
SEQRES 30 A 594 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN
SEQRES 31 A 594 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN
SEQRES 32 A 594 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE
SEQRES 33 A 594 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR
SEQRES 34 A 594 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY
SEQRES 35 A 594 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER
SEQRES 36 A 594 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR
SEQRES 37 A 594 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU
SEQRES 38 A 594 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG
SEQRES 39 A 594 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE
SEQRES 40 A 594 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS
SEQRES 41 A 594 GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO
SEQRES 42 A 594 ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE
SEQRES 43 A 594 TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG
SEQRES 44 A 594 ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN
SEQRES 45 A 594 LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS
SEQRES 46 A 594 PRO VAL ARG SER ILE ILE CYS PRO THR
SEQRES 1 C 150 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE
SEQRES 2 C 150 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE
SEQRES 3 C 150 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR
SEQRES 4 C 150 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN
SEQRES 5 C 150 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN
SEQRES 6 C 150 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS
SEQRES 7 C 150 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS
SEQRES 8 C 150 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU
SEQRES 9 C 150 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA
SEQRES 10 C 150 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS
SEQRES 11 C 150 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN LYS
SEQRES 12 C 150 GLY GLU ASN LEU TYR PHE GLN
SEQRES 1 D 150 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE
SEQRES 2 D 150 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE
SEQRES 3 D 150 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR
SEQRES 4 D 150 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN
SEQRES 5 D 150 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN
SEQRES 6 D 150 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS
SEQRES 7 D 150 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS
SEQRES 8 D 150 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU
SEQRES 9 D 150 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA
SEQRES 10 D 150 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS
SEQRES 11 D 150 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN LYS
SEQRES 12 D 150 GLY GLU ASN LEU TYR PHE GLN
SEQRES 1 B 594 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN
SEQRES 2 B 594 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE
SEQRES 3 B 594 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO
SEQRES 4 B 594 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER
SEQRES 5 B 594 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU
SEQRES 6 B 594 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU
SEQRES 7 B 594 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE
SEQRES 8 B 594 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN
SEQRES 9 B 594 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER
SEQRES 10 B 594 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN
SEQRES 11 B 594 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA
SEQRES 12 B 594 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU
SEQRES 13 B 594 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU
SEQRES 14 B 594 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU
SEQRES 15 B 594 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN
SEQRES 16 B 594 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG
SEQRES 17 B 594 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU
SEQRES 18 B 594 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU
SEQRES 19 B 594 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU
SEQRES 20 B 594 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP
SEQRES 21 B 594 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP
SEQRES 22 B 594 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET
SEQRES 23 B 594 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL
SEQRES 24 B 594 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG
SEQRES 25 B 594 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE
SEQRES 26 B 594 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE
SEQRES 27 B 594 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU
SEQRES 28 B 594 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS
SEQRES 29 B 594 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU
SEQRES 30 B 594 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN
SEQRES 31 B 594 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN
SEQRES 32 B 594 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE
SEQRES 33 B 594 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR
SEQRES 34 B 594 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY
SEQRES 35 B 594 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER
SEQRES 36 B 594 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR
SEQRES 37 B 594 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU
SEQRES 38 B 594 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG
SEQRES 39 B 594 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE
SEQRES 40 B 594 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU LYS
SEQRES 41 B 594 GLU LEU ALA LEU ASP THR ASN GLN LEU LYS SER VAL PRO
SEQRES 42 B 594 ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN LYS ILE
SEQRES 43 B 594 TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS PRO ARG
SEQRES 44 B 594 ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SER GLN
SEQRES 45 B 594 LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER GLY LYS
SEQRES 46 B 594 PRO VAL ARG SER ILE ILE CYS PRO THR
MODRES 5IJD NAG E 1 NAG -D
MODRES 5IJD NAG E 2 NAG -D
MODRES 5IJD NAG A 703 NAG -D
MODRES 5IJD NAG A 704 NAG -D
MODRES 5IJD NAG F 1 NAG -D
MODRES 5IJD NAG F 2 NAG -D
MODRES 5IJD NAG C 201 NAG -D
MODRES 5IJD NAG G 1 NAG -D
MODRES 5IJD NAG G 2 NAG -D
MODRES 5IJD NAG H 1 NAG -D
MODRES 5IJD NAG H 2 NAG -D
MODRES 5IJD NAG D 803 NAG -D
MODRES 5IJD NAG I 1 NAG -D
MODRES 5IJD NAG I 2 NAG -D
MODRES 5IJD NAG J 1 NAG -D
MODRES 5IJD NAG J 2 NAG -D
MODRES 5IJD NAG B 705 NAG -D
MODRES 5IJD NAG K 1 NAG -D
MODRES 5IJD NAG K 2 NAG -D
HET NAG E 1 14
HET NAG E 2 14
HET NAG F 1 14
HET NAG F 2 14
HET NAG G 1 14
HET NAG G 2 14
HET NAG H 1 14
HET NAG H 2 14
HET NAG I 1 14
HET NAG I 2 14
HET NAG J 1 14
HET NAG J 2 14
HET NAG K 1 14
HET NAG K 2 14
HET NAG A 703 14
HET NAG A 704 14
HET NAG C 201 14
HET LP4 C 204 45
HET LP5 C 205 48
HET DAO C 206 13
HET MYR C 207 15
HET NAG D 803 14
HET LP4 D 804 45
HET LP5 D 805 48
HET DAO D 806 13
HET MYR D 807 15
HET NAG B 705 14
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM LP4 2-DEOXY-3-O-[(3R)-3-HYDROXYTETRADECANOYL]-2-{[(3R)-3-
HETNAM 2 LP4 HYDROXYTETRADECANOYL]AMINO}-4-O-PHOSPHONO-BETA-D-
HETNAM 3 LP4 GLUCOPYRANOSE
HETNAM LP5 (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-
HETNAM 2 LP5 ((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)
HETNAM 3 LP5 TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
HETNAM DAO LAURIC ACID
HETNAM MYR MYRISTIC ACID
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
FORMUL 5 NAG 19(C8 H15 N O6)
FORMUL 15 LP4 2(C34 H66 N O12 P)
FORMUL 16 LP5 2(C34 H66 N O12 P)
FORMUL 17 DAO 2(C12 H24 O2)
FORMUL 18 MYR 2(C14 H28 O2)
FORMUL 25 HOH *232(H2 O)
HELIX 1 AA1 ALA A 168 ASN A 172 5 5
HELIX 2 AA2 LEU A 194 GLU A 199 1 6
HELIX 3 AA3 SER A 238 ASN A 248 1 11
HELIX 4 AA4 GLU A 272 GLU A 277 5 6
HELIX 5 AA5 SER A 296 ALA A 306 5 11
HELIX 6 AA6 SER A 390 GLY A 395 1 6
HELIX 7 AA7 PHE A 461 LEU A 466 5 6
HELIX 8 AA8 ILE A 585 ASN A 595 1 11
HELIX 9 AA9 PRO A 611 ILE A 615 5 5
HELIX 10 AB1 TYR C 102 ALA C 107 5 6
HELIX 11 AB2 TYR D 102 ALA D 107 5 6
HELIX 12 AB3 PRO B 167 ASN B 172 5 6
HELIX 13 AB4 SER B 238 ASN B 248 1 11
HELIX 14 AB5 GLU B 272 GLU B 277 5 6
HELIX 15 AB6 ASP B 297 PHE B 302 1 6
HELIX 16 AB7 HIS B 303 ALA B 306 5 4
HELIX 17 AB8 SER B 390 GLY B 395 1 6
HELIX 18 AB9 ILE B 585 SER B 596 1 12
SHEET 1 AA125 GLU A 30 VAL A 32 0
SHEET 2 AA125 THR A 36 GLN A 38 -1 O THR A 36 N VAL A 31
SHEET 3 AA125 ASN A 57 ASP A 59 1 O ASN A 57 N TYR A 37
SHEET 4 AA125 TRP A 81 ASP A 83 1 O ASP A 83 N ILE A 58
SHEET 5 AA125 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82
SHEET 6 AA125 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106
SHEET 7 AA125 LYS A 153 ASN A 155 1 O LYS A 153 N LEU A 130
SHEET 8 AA125 HIS A 178 ASP A 180 1 O HIS A 178 N LEU A 154
SHEET 9 AA125 LEU A 207 ASP A 208 1 O ASP A 208 N VAL A 179
SHEET 10 AA125 LYS A 226 ARG A 233 1 O THR A 231 N LEU A 207
SHEET 11 AA125 HIS A 253 GLY A 260 1 O HIS A 253 N LEU A 227
SHEET 12 AA125 THR A 283 LEU A 289 1 O THR A 283 N VAL A 254
SHEET 13 AA125 ALA A 310 ALA A 314 1 O SER A 312 N LEU A 289
SHEET 14 AA125 SER A 332 ILE A 336 1 O SER A 334 N LEU A 313
SHEET 15 AA125 SER A 353 THR A 357 1 O THR A 355 N ILE A 335
SHEET 16 AA125 TYR A 375 ASP A 377 1 O ASP A 377 N LEU A 356
SHEET 17 AA125 HIS A 401 ASP A 403 1 O HIS A 401 N LEU A 376
SHEET 18 AA125 HIS A 424 ASP A 426 1 O HIS A 424 N LEU A 402
SHEET 19 AA125 TYR A 449 ASP A 451 1 O TYR A 449 N LEU A 425
SHEET 20 AA125 THR A 473 LYS A 475 1 O THR A 473 N LEU A 450
SHEET 21 AA125 PHE A 498 ASP A 500 1 O PHE A 498 N LEU A 474
SHEET 22 AA125 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499
SHEET 23 AA125 GLU A 546 ALA A 548 1 O ALA A 548 N LEU A 523
SHEET 24 AA125 LYS A 570 TRP A 572 1 O LYS A 570 N LEU A 547
SHEET 25 AA125 GLU A 599 GLN A 600 1 O GLN A 600 N ILE A 571
SHEET 1 AA2 2 ILE A 67 LEU A 68 0
SHEET 2 AA2 2 THR A 91 ILE A 92 1 O THR A 91 N LEU A 68
SHEET 1 AA3 2 THR A 188 ILE A 189 0
SHEET 2 AA3 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189
SHEET 1 AA4 3 PHE A 385 CYS A 388 0
SHEET 2 AA4 3 ALA A 409 MET A 412 1 O ILE A 411 N CYS A 388
SHEET 3 AA4 3 THR A 431 LYS A 433 1 O LYS A 433 N MET A 412
SHEET 1 AA5 2 LYS A 458 ILE A 459 0
SHEET 2 AA5 2 SER A 480 PHE A 481 1 O SER A 480 N ILE A 459
SHEET 1 AA6 2 THR A 485 LEU A 486 0
SHEET 2 AA6 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486
SHEET 1 AA7 6 TRP C 23 ASN C 26 0
SHEET 2 AA7 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA7 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35
SHEET 4 AA7 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147
SHEET 5 AA7 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 AA7 6 ILE C 85 GLU C 86 -1 O ILE C 85 N VAL C 82
SHEET 1 AA8 6 TRP C 23 ASN C 26 0
SHEET 2 AA8 6 ALA C 30 TYR C 36 -1 O ILE C 32 N CYS C 25
SHEET 3 AA8 6 GLU C 144 HIS C 155 -1 O ASN C 150 N SER C 35
SHEET 4 AA8 6 GLY C 129 ALA C 139 -1 N ALA C 137 O PHE C 147
SHEET 5 AA8 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 AA8 6 ARG C 90 VAL C 93 -1 O ARG C 90 N LEU C 78
SHEET 1 AA9 3 ILE C 44 GLU C 49 0
SHEET 2 AA9 3 GLY C 56 PHE C 65 -1 O HIS C 62 N SER C 47
SHEET 3 AA9 3 VAL C 113 GLU C 122 -1 O THR C 115 N VAL C 63
SHEET 1 AB1 6 GLN D 21 ASN D 26 0
SHEET 2 AB1 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22
SHEET 3 AB1 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33
SHEET 4 AB1 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153
SHEET 5 AB1 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 AB1 6 ILE D 85 GLU D 86 -1 O ILE D 85 N VAL D 82
SHEET 1 AB2 6 GLN D 21 ASN D 26 0
SHEET 2 AB2 6 ILE D 31 TYR D 36 -1 O TYR D 34 N GLN D 22
SHEET 3 AB2 6 LYS D 145 HIS D 155 -1 O THR D 152 N SER D 33
SHEET 4 AB2 6 GLY D 129 ALA D 139 -1 N TYR D 131 O ILE D 153
SHEET 5 AB2 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 AB2 6 ARG D 90 VAL D 93 -1 O ARG D 90 N LEU D 78
SHEET 1 AB3 3 SER D 45 SER D 47 0
SHEET 2 AB3 3 GLY D 56 PHE D 65 -1 O HIS D 62 N SER D 47
SHEET 3 AB3 3 VAL D 113 GLU D 122 -1 O PHE D 121 N THR D 57
SHEET 1 AB410 ASN B 57 ASP B 59 0
SHEET 2 AB410 TRP B 81 ASP B 83 1 O TRP B 81 N ILE B 58
SHEET 3 AB410 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82
SHEET 4 AB410 ASN B 129 VAL B 131 1 O VAL B 131 N LEU B 106
SHEET 5 AB410 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130
SHEET 6 AB410 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154
SHEET 7 AB410 LEU B 205 ASP B 208 1 O SER B 206 N VAL B 179
SHEET 8 AB410 LYS B 226 ARG B 233 1 O HIS B 228 N LEU B 205
SHEET 9 AB410 HIS B 253 GLY B 260 1 O ARG B 256 N HIS B 228
SHEET 10 AB410 THR B 283 LEU B 289 1 O THR B 283 N VAL B 254
SHEET 1 AB5 2 THR B 188 ILE B 189 0
SHEET 2 AB5 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189
SHEET 1 AB613 MET B 311 ALA B 314 0
SHEET 2 AB613 SER B 332 ILE B 336 1 O SER B 334 N LEU B 313
SHEET 3 AB613 SER B 353 THR B 357 1 O THR B 355 N ILE B 335
SHEET 4 AB613 TYR B 375 ASP B 377 1 O TYR B 375 N LEU B 354
SHEET 5 AB613 HIS B 401 ASP B 403 1 O HIS B 401 N LEU B 376
SHEET 6 AB613 HIS B 424 ASP B 426 1 O HIS B 424 N LEU B 402
SHEET 7 AB613 TYR B 449 ASP B 451 1 O TYR B 449 N LEU B 425
SHEET 8 AB613 THR B 473 LYS B 475 1 O LYS B 475 N LEU B 450
SHEET 9 AB613 PHE B 498 ASP B 500 1 O PHE B 498 N LEU B 474
SHEET 10 AB613 LEU B 522 ASN B 524 1 O ASN B 524 N LEU B 499
SHEET 11 AB613 GLU B 546 ALA B 548 1 O GLU B 546 N LEU B 523
SHEET 12 AB613 LYS B 570 TRP B 572 1 O TRP B 572 N LEU B 547
SHEET 13 AB613 GLU B 599 GLN B 600 1 O GLN B 600 N ILE B 571
SHEET 1 AB7 3 PHE B 385 CYS B 388 0
SHEET 2 AB7 3 ALA B 409 MET B 412 1 O ILE B 411 N PHE B 385
SHEET 3 AB7 3 THR B 431 LYS B 433 1 O THR B 431 N ILE B 410
SHEET 1 AB8 2 LYS B 458 ILE B 459 0
SHEET 2 AB8 2 SER B 480 PHE B 481 1 O SER B 480 N ILE B 459
SHEET 1 AB9 2 THR B 485 LEU B 486 0
SHEET 2 AB9 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486
SSBOND 1 CYS A 280 CYS A 304 1555 1555 2.59
SSBOND 2 CYS A 388 CYS A 389 1555 1555 2.03
SSBOND 3 CYS A 580 CYS A 605 1555 1555 2.02
SSBOND 4 CYS A 582 CYS A 617 1555 1555 2.07
SSBOND 5 CYS C 25 CYS C 51 1555 1555 2.07
SSBOND 6 CYS C 37 CYS C 148 1555 1555 2.09
SSBOND 7 CYS C 95 CYS C 105 1555 1555 2.02
SSBOND 8 CYS D 25 CYS D 51 1555 1555 2.04
SSBOND 9 CYS D 37 CYS D 148 1555 1555 2.09
SSBOND 10 CYS D 95 CYS D 105 1555 1555 2.05
SSBOND 11 CYS B 28 CYS B 39 1555 1555 2.26
SSBOND 12 CYS B 280 CYS B 304 1555 1555 2.04
SSBOND 13 CYS B 388 CYS B 389 1555 1555 2.04
SSBOND 14 CYS B 580 CYS B 605 1555 1555 2.05
SSBOND 15 CYS B 582 CYS B 617 1555 1555 2.06
LINK ND2 ASN A 204 C1 NAG E 1 1555 1555 1.45
LINK ND2 ASN A 307 C1 NAG A 703 1555 1555 1.47
LINK ND2 ASN A 492 C1 NAG A 704 1555 1555 1.47
LINK ND2 ASN A 524 C1 NAG F 1 1555 1555 1.47
LINK ND2 ASN C 114 C1 NAG C 201 1555 1555 1.46
LINK ND2 ASN C 150 C1 NAG G 1 1555 1555 1.43
LINK ND2 ASN D 114 C1 NAG D 803 1555 1555 1.48
LINK ND2 ASN D 150 C1 NAG H 1 1555 1555 1.46
LINK ND2 ASN B 204 C1 NAG I 1 1555 1555 1.47
LINK ND2 ASN B 307 C1 NAG J 1 1555 1555 1.45
LINK ND2 ASN B 492 C1 NAG B 705 1555 1555 1.47
LINK ND2 ASN B 524 C1 NAG K 1 1555 1555 1.46
LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44
LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.42
LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44
LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.47
LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46
LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.45
LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.47
CISPEP 1 HIS A 98 GLY A 99 0 1.04
CISPEP 2 CYS A 388 CYS A 389 0 -22.94
CISPEP 3 CYS A 582 PRO A 583 0 4.46
CISPEP 4 GLU C 49 PRO C 50 0 -5.58
CISPEP 5 GLU D 49 PRO D 50 0 -7.10
CISPEP 6 CYS B 388 CYS B 389 0 -9.12
CISPEP 7 CYS B 582 PRO B 583 0 6.32
CRYST1 66.843 145.737 136.195 90.00 100.67 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014960 0.000000 0.002818 0.00000
SCALE2 0.000000 0.006862 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007472 0.00000