HEADER INOSITOL POLYPHOSPHATE BINDING PROTEIN 02-MAR-16 5IJJ TITLE STRUCTURE OF THE SPX DOMAIN OF CHAETOMIUM THERMOPHILUM TITLE 2 GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 IN COMPLEX WITH INOSITOL TITLE 3 HEXAKISPHOSPHATE (INSP6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPX DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.4.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0005190; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMH-HC KEYWDS HELICAL BUNDLE, ALPHA-HELICAL HAIRPIN, INOSITOL PHOSPHATE BINDING, KEYWDS 2 PROTEIN-PROTEIN INTERACTION, HYDROLASE, INOSITOL POLYPHOSPHATE KEYWDS 3 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.WILD,M.HOTHORN REVDAT 5 10-JAN-24 5IJJ 1 REMARK REVDAT 4 07-OCT-20 5IJJ 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN SITE ATOM REVDAT 3 28-SEP-16 5IJJ 1 REVDAT 2 01-JUN-16 5IJJ 1 JRNL REVDAT 1 27-APR-16 5IJJ 0 JRNL AUTH R.WILD,R.GERASIMAITE,J.Y.JUNG,V.TRUFFAULT,I.PAVLOVIC, JRNL AUTH 2 A.SCHMIDT,A.SAIARDI,H.J.JESSEN,Y.POIRIER,M.HOTHORN,A.MAYER JRNL TITL CONTROL OF EUKARYOTIC PHOSPHATE HOMEOSTASIS BY INOSITOL JRNL TITL 2 POLYPHOSPHATE SENSOR DOMAINS. JRNL REF SCIENCE V. 352 986 2016 JRNL REFN ESSN 1095-9203 JRNL PMID 27080106 JRNL DOI 10.1126/SCIENCE.AAD9858 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 27510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.65000 REMARK 3 B22 (A**2) : -1.60000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2853 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2730 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3873 ; 2.229 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6286 ; 1.096 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;31.548 ;23.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;15.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;21.004 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3053 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 622 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 1.511 ; 2.422 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 1.510 ; 2.421 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1657 ; 2.195 ; 3.616 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1658 ; 2.195 ; 3.618 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1524 ; 3.169 ; 3.350 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1524 ; 3.168 ; 3.349 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2216 ; 4.735 ; 4.982 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12285 ; 9.195 ;26.349 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12261 ; 9.190 ;26.316 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0757 -0.6633 34.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.2218 REMARK 3 T33: 0.0595 T12: -0.0620 REMARK 3 T13: -0.0452 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.9028 L22: 5.9078 REMARK 3 L33: 5.7978 L12: 2.8791 REMARK 3 L13: -1.8086 L23: -4.4870 REMARK 3 S TENSOR REMARK 3 S11: 0.3152 S12: -0.6631 S13: -0.0281 REMARK 3 S21: 0.5673 S22: -0.5378 S23: -0.3881 REMARK 3 S31: -0.7042 S32: 0.6942 S33: 0.2226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3862 12.1057 9.4927 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1244 REMARK 3 T33: 0.1534 T12: 0.0032 REMARK 3 T13: -0.0157 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.6179 L22: 3.1701 REMARK 3 L33: 7.9388 L12: 1.1585 REMARK 3 L13: -2.1507 L23: -4.6330 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: 0.0494 S13: 0.0848 REMARK 3 S21: 0.0660 S22: 0.0761 S23: 0.1242 REMARK 3 S31: -0.3064 S32: -0.0989 S33: -0.1829 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7321 13.6978 1.9794 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.4359 REMARK 3 T33: 0.2258 T12: -0.1008 REMARK 3 T13: -0.1290 T23: 0.1679 REMARK 3 L TENSOR REMARK 3 L11: 0.5300 L22: 0.8237 REMARK 3 L33: 9.1994 L12: 0.5145 REMARK 3 L13: -2.0491 L23: -2.5976 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.1652 S13: 0.0177 REMARK 3 S21: 0.2500 S22: -0.4673 S23: -0.2292 REMARK 3 S31: -0.7364 S32: 1.0659 S33: 0.4082 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3817 -7.3334 25.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.0137 T22: 0.0678 REMARK 3 T33: 0.0334 T12: 0.0248 REMARK 3 T13: -0.0012 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 3.5521 L22: 5.8431 REMARK 3 L33: 8.1903 L12: 1.1876 REMARK 3 L13: -1.2687 L23: -3.2819 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.2723 S13: -0.1889 REMARK 3 S21: -0.1861 S22: -0.1140 S23: -0.2112 REMARK 3 S31: 0.2110 S32: 0.2604 S33: 0.1918 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1842 5.6740 1.1195 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.5089 REMARK 3 T33: 0.1671 T12: 0.0600 REMARK 3 T13: -0.0713 T23: 0.0850 REMARK 3 L TENSOR REMARK 3 L11: 9.1000 L22: 8.3276 REMARK 3 L33: 14.5001 L12: 8.1170 REMARK 3 L13: -10.1222 L23: -7.5642 REMARK 3 S TENSOR REMARK 3 S11: -0.2045 S12: -0.0110 S13: -0.2922 REMARK 3 S21: -0.1609 S22: -0.0768 S23: -0.4432 REMARK 3 S31: 0.2599 S32: 0.7025 S33: 0.2813 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1626 30.7025 10.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.4277 REMARK 3 T33: 0.3423 T12: 0.1118 REMARK 3 T13: 0.1011 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 2.1877 L22: 6.9399 REMARK 3 L33: 11.6978 L12: -0.0435 REMARK 3 L13: 3.2745 L23: -6.1837 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.2672 S13: -0.4163 REMARK 3 S21: -0.4380 S22: -0.4239 S23: -1.2407 REMARK 3 S31: 0.5090 S32: 1.4770 S33: 0.4036 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): -32.9227 16.5346 27.6149 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.0428 REMARK 3 T33: 0.1622 T12: 0.0256 REMARK 3 T13: 0.0297 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.9346 L22: 2.2679 REMARK 3 L33: 7.9449 L12: 2.5084 REMARK 3 L13: -4.2120 L23: -4.0766 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: 0.0523 S13: -0.0354 REMARK 3 S21: -0.1548 S22: 0.0337 S23: -0.0291 REMARK 3 S31: 0.3121 S32: -0.0436 S33: 0.0744 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9443 10.2822 49.1029 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: 0.2401 REMARK 3 T33: 0.1885 T12: 0.0272 REMARK 3 T13: -0.0382 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: 3.3319 L22: 4.3883 REMARK 3 L33: 6.6938 L12: 1.7607 REMARK 3 L13: -3.7846 L23: -3.3024 REMARK 3 S TENSOR REMARK 3 S11: -0.1398 S12: -0.1887 S13: -0.4138 REMARK 3 S21: -0.0895 S22: -0.4455 S23: -0.5634 REMARK 3 S31: 0.3741 S32: 0.6263 S33: 0.5853 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3843 31.6082 23.1159 REMARK 3 T TENSOR REMARK 3 T11: 0.0322 T22: 0.0803 REMARK 3 T33: 0.0513 T12: -0.0004 REMARK 3 T13: -0.0062 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 5.3337 L22: 4.5367 REMARK 3 L33: 7.3239 L12: 1.8947 REMARK 3 L13: -3.6490 L23: -3.5067 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.2855 S13: -0.1487 REMARK 3 S21: 0.1771 S22: -0.1802 S23: -0.1494 REMARK 3 S31: -0.2280 S32: 0.5625 S33: 0.1633 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 159 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): -34.3301 17.9356 49.8793 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.4073 REMARK 3 T33: 0.2569 T12: -0.0383 REMARK 3 T13: -0.0055 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.2090 L22: 6.9971 REMARK 3 L33: 14.8428 L12: 0.3199 REMARK 3 L13: -1.3910 L23: -6.3659 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.1685 S13: 0.0281 REMARK 3 S21: 0.3465 S22: -0.1613 S23: -0.2627 REMARK 3 S31: -0.4953 S32: 0.1959 S33: 0.1113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 20.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IIG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M AMMONIUM ACETATE, REMARK 280 0.1M BISTRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.68150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.68300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.68150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.68300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 176 REMARK 465 ARG A 177 REMARK 465 ASN A 178 REMARK 465 VAL A 179 REMARK 465 GLU A 180 REMARK 465 ASP A 181 REMARK 465 ASN A 182 REMARK 465 ARG A 183 REMARK 465 SER A 184 REMARK 465 LEU A 185 REMARK 465 GLU A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 ASN B 6 REMARK 465 LEU B 7 REMARK 465 PRO B 8 REMARK 465 ARG B 9 REMARK 465 ASN B 10 REMARK 465 GLN B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 GLU B 14 REMARK 465 TRP B 15 REMARK 465 ALA B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 TYR B 19 REMARK 465 ILE B 20 REMARK 465 ASN B 178 REMARK 465 VAL B 179 REMARK 465 GLU B 180 REMARK 465 ASP B 181 REMARK 465 ASN B 182 REMARK 465 ARG B 183 REMARK 465 SER B 184 REMARK 465 LEU B 185 REMARK 465 GLU B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ASN B 21 CG OD1 ND2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 136 O HOH B 601 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 34 CD GLU A 34 OE2 0.165 REMARK 500 TRP A 114 CB TRP A 114 CG -0.109 REMARK 500 ASP A 149 CG ASP A 149 OD2 0.142 REMARK 500 SER B 60 CB SER B 60 OG -0.099 REMARK 500 TYR B 143 CE1 TYR B 143 CZ 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 LYS A 64 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 149 CB - CG - OD1 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 142 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 161 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 50.42 36.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 DBREF 5IJJ A 1 184 UNP G0RY29 G0RY29_CHATD 1 184 DBREF 5IJJ B 1 184 UNP G0RY29 G0RY29_CHATD 1 184 SEQADV 5IJJ LEU A 185 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ GLU A 186 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 187 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 188 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 189 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 190 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 191 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS A 192 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ LEU B 185 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ GLU B 186 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 187 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 188 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 189 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 190 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 191 UNP G0RY29 EXPRESSION TAG SEQADV 5IJJ HIS B 192 UNP G0RY29 EXPRESSION TAG SEQRES 1 A 192 MET LYS PHE GLY LYS ASN LEU PRO ARG ASN GLN VAL PRO SEQRES 2 A 192 GLU TRP ALA GLY SER TYR ILE ASN TYR LYS GLY LEU LYS SEQRES 3 A 192 LYS LEU VAL LYS ALA ALA ALA GLU SER ALA LYS ASP GLY SEQRES 4 A 192 GLN PRO VAL ASP LEU ALA GLU PHE PHE PHE ALA LEU ASP SEQRES 5 A 192 ARG ASN LEU GLU ASP VAL ASP SER PHE TYR ASN LYS LYS SEQRES 6 A 192 PHE ALA ASP ALA CYS ARG ARG LEU LYS VAL LEU GLN ASP SEQRES 7 A 192 ARG TYR GLY THR THR PRO GLU VAL VAL VAL ASN LEU ASP SEQRES 8 A 192 ASP ASP GLU ALA GLU GLU LEU MET GLY ALA LEU LEU GLU SEQRES 9 A 192 LEU ARG SER GLN LEU ARG LYS LEU GLN TRP PHE GLY GLU SEQRES 10 A 192 ILE ASN ARG ARG GLY PHE ILE LYS ILE THR LYS LYS LEU SEQRES 11 A 192 ASP LYS LYS VAL PRO ASN THR THR THR GLN HIS ARG TYR SEQRES 12 A 192 ILE SER THR LYS VAL ASP PRO LYS PRO PHE ALA LYS ASP SEQRES 13 A 192 THR THR VAL ALA ARG ILE LEU THR GLU ILE ASN ARG TRP SEQRES 14 A 192 ILE SER VAL LEU GLY ASP ALA ARG ASN VAL GLU ASP ASN SEQRES 15 A 192 ARG SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 192 MET LYS PHE GLY LYS ASN LEU PRO ARG ASN GLN VAL PRO SEQRES 2 B 192 GLU TRP ALA GLY SER TYR ILE ASN TYR LYS GLY LEU LYS SEQRES 3 B 192 LYS LEU VAL LYS ALA ALA ALA GLU SER ALA LYS ASP GLY SEQRES 4 B 192 GLN PRO VAL ASP LEU ALA GLU PHE PHE PHE ALA LEU ASP SEQRES 5 B 192 ARG ASN LEU GLU ASP VAL ASP SER PHE TYR ASN LYS LYS SEQRES 6 B 192 PHE ALA ASP ALA CYS ARG ARG LEU LYS VAL LEU GLN ASP SEQRES 7 B 192 ARG TYR GLY THR THR PRO GLU VAL VAL VAL ASN LEU ASP SEQRES 8 B 192 ASP ASP GLU ALA GLU GLU LEU MET GLY ALA LEU LEU GLU SEQRES 9 B 192 LEU ARG SER GLN LEU ARG LYS LEU GLN TRP PHE GLY GLU SEQRES 10 B 192 ILE ASN ARG ARG GLY PHE ILE LYS ILE THR LYS LYS LEU SEQRES 11 B 192 ASP LYS LYS VAL PRO ASN THR THR THR GLN HIS ARG TYR SEQRES 12 B 192 ILE SER THR LYS VAL ASP PRO LYS PRO PHE ALA LYS ASP SEQRES 13 B 192 THR THR VAL ALA ARG ILE LEU THR GLU ILE ASN ARG TRP SEQRES 14 B 192 ILE SER VAL LEU GLY ASP ALA ARG ASN VAL GLU ASP ASN SEQRES 15 B 192 ARG SER LEU GLU HIS HIS HIS HIS HIS HIS HET IHP A 500 36 HET EDO A 501 4 HET EDO A 502 4 HET ACT A 503 4 HET IHP B 500 36 HET IHP B 501 36 HET EDO B 502 4 HET EDO B 503 4 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 IHP 3(C6 H18 O24 P6) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 ACT C2 H3 O2 1- FORMUL 11 HOH *84(H2 O) HELIX 1 AA1 ASN A 6 GLN A 11 1 6 HELIX 2 AA2 VAL A 12 TYR A 19 5 8 HELIX 3 AA3 ASN A 21 ASP A 38 1 18 HELIX 4 AA4 LEU A 44 GLY A 81 1 38 HELIX 5 AA5 THR A 83 LEU A 90 5 8 HELIX 6 AA6 ASP A 91 VAL A 134 1 44 HELIX 7 AA7 THR A 139 VAL A 148 1 10 HELIX 8 AA8 LYS A 151 ASP A 156 1 6 HELIX 9 AA9 THR A 157 ASP A 175 1 19 HELIX 10 AB1 TYR B 22 ASP B 38 1 17 HELIX 11 AB2 LEU B 44 GLY B 81 1 38 HELIX 12 AB3 THR B 83 LEU B 90 5 8 HELIX 13 AB4 ASP B 91 VAL B 134 1 44 HELIX 14 AB5 THR B 139 VAL B 148 1 10 HELIX 15 AB6 LYS B 151 ASP B 156 1 6 HELIX 16 AB7 THR B 157 ARG B 177 1 21 SITE 1 AC1 15 LYS A 2 PHE A 3 GLY A 4 LYS A 5 SITE 2 AC1 15 TYR A 22 LYS A 26 LYS A 30 GLU A 34 SITE 3 AC1 15 LYS A 37 LYS A 125 LYS A 129 LYS A 132 SITE 4 AC1 15 LYS A 133 HOH A 601 IHP B 500 SITE 1 AC2 3 ASN A 21 LEU A 28 ASN A 54 SITE 1 AC3 4 PHE A 49 ASP A 52 ARG A 53 GLU A 56 SITE 1 AC4 5 THR A 139 ARG A 142 THR B 83 GLU B 85 SITE 2 AC4 5 EDO B 502 SITE 1 AC5 8 MET A 1 LYS A 125 LYS A 128 LYS A 132 SITE 2 AC5 8 IHP A 500 LYS B 125 LYS B 128 LYS B 132 SITE 1 AC6 5 TYR B 22 LYS B 26 LYS B 30 LYS B 129 SITE 2 AC6 5 LYS B 133 SITE 1 AC7 4 ACT A 503 THR B 83 GLU B 85 ARG B 168 SITE 1 AC8 3 THR A 83 GLU A 85 ARG B 142 CRYST1 89.363 53.366 94.314 90.00 113.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011190 0.000000 0.004847 0.00000 SCALE2 0.000000 0.018739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011555 0.00000