HEADER OXIDOREDUCTASE 02-MAR-16 5IJU TITLE STRUCTURE OF AN AA10 LYTIC POLYSACCHARIDE MONOOXYGENASE FROM BACILLUS TITLE 2 AMYLOLIQUEFACIENS WITH CU(II) BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: BAAA10 LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RBAM17540; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PROTEIN WAS PRODUCED AS A SUMO FUSION, THE SUMO DOMAIN COMPND 7 REMOVED USING SUMO PROTEASE DURING PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS; SOURCE 3 ORGANISM_TAXID: 1390; SOURCE 4 GENE: RBAM17540, BAMF_1859; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CHAMPION-PETSUMO KEYWDS LYTIC POLYSACCHARIDE MONOOXYGENASE, COPPER II, CAZY AA10, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.C.GREGORY,G.R.HEMSWORTH,J.P.TURKENBURG,S.J.HART,P.H.WALTON, AUTHOR 2 G.J.DAVIES REVDAT 5 10-JAN-24 5IJU 1 LINK REVDAT 4 30-AUG-17 5IJU 1 ATOM REVDAT 3 02-NOV-16 5IJU 1 JRNL REVDAT 2 19-OCT-16 5IJU 1 JRNL REVDAT 1 21-SEP-16 5IJU 0 JRNL AUTH R.C.GREGORY,G.R.HEMSWORTH,J.P.TURKENBURG,S.J.HART, JRNL AUTH 2 P.H.WALTON,G.J.DAVIES JRNL TITL ACTIVITY, STABILITY AND 3-D STRUCTURE OF THE CU(II) FORM OF JRNL TITL 2 A CHITIN-ACTIVE LYTIC POLYSACCHARIDE MONOOXYGENASE FROM JRNL TITL 3 BACILLUS AMYLOLIQUEFACIENS. JRNL REF DALTON TRANS V. 45 16904 2016 JRNL REFN ESSN 1477-9234 JRNL PMID 27722375 JRNL DOI 10.1039/C6DT02793H REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.R.HEMSWORTH,E.J.TAYLOR,R.Q.KIM,R.C.GREGORY,S.J.LEWIS, REMARK 1 AUTH 2 J.P.TURKENBURG,A.PARKIN,G.J.DAVIES,P.H.WALTON REMARK 1 TITL THE COPPER ACTIVE SITE OF CBM33 POLYSACCHARIDE OXYGENASES. REMARK 1 REF J. AM. CHEM. SOC. V. 135 6069 2013 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 23540833 REMARK 1 DOI 10.1021/JA402106E REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2876 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2596 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3912 ; 1.637 ; 1.902 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5976 ; 3.766 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 6.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;34.397 ;24.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;13.358 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3316 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 0.664 ; 0.845 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1421 ; 0.664 ; 0.844 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 1.118 ; 1.264 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5IJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218928. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2YOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAOAC PH 5.0, 20 % PEG-6000, 0.2 REMARK 280 M CACL2 MICRO SEEDED USING CRYSTALS GROWN IN 0.1 M MMT PH 4.0, REMARK 280 25 % PEG-1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.74100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 206 REMARK 465 LYS B 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 111 CD NE CZ NH1 NH2 REMARK 470 ARG B 111 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 175 OD2 ASP B 62 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 76 -159.09 -123.75 REMARK 500 ALA B 76 -164.25 -125.44 REMARK 500 ASP B 94 -160.95 -101.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 525 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 N REMARK 620 2 HIS A 28 ND1 92.6 REMARK 620 3 HIS A 125 NE2 95.6 171.4 REMARK 620 4 HOH A 412 O 128.4 91.5 81.5 REMARK 620 5 HOH A 487 O 131.9 87.8 88.4 99.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 28 N REMARK 620 2 HIS B 28 ND1 95.0 REMARK 620 3 HIS B 125 NE2 92.4 172.2 REMARK 620 4 HOH B 454 O 132.7 96.1 80.6 REMARK 620 5 HOH B 498 O 125.9 83.3 90.4 101.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 166 OD1 REMARK 620 2 THR B 168 O 86.5 REMARK 620 3 HOH B 403 O 85.7 165.2 REMARK 620 4 HOH B 499 O 77.2 95.0 95.6 REMARK 620 5 HOH B 504 O 79.4 80.3 85.8 156.4 REMARK 620 6 HOH B 528 O 140.1 84.3 109.6 65.1 136.3 REMARK 620 7 HOH B 534 O 157.2 94.7 87.6 125.2 78.3 62.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YOY RELATED DB: PDB REMARK 900 THE SAME ENZYME WITH COPPER REDUCED USING ASCORBATE REMARK 900 RELATED ID: 2YOX RELATED DB: PDB REMARK 900 THE SAME ENZYME WITH COPPER REDUCED BY PHOTO REDUCTION REMARK 900 RELATED ID: 2YOW RELATED DB: PDB REMARK 900 THE SAME ENZYME WITHOUT COPPER DBREF 5IJU A 28 206 UNP E1UUV3 E1UUV3_BACAS 28 206 DBREF 5IJU B 28 206 UNP E1UUV3 E1UUV3_BACAS 28 206 SEQRES 1 A 179 HIS GLY TYR ILE LYS GLU PRO VAL SER ARG ALA TYR MET SEQRES 2 A 179 GLY ALA LEU GLU LYS GLN THR MET GLY TRP THR ALA ALA SEQRES 3 A 179 ALA GLN LYS TYR GLY SER VAL ILE ASP ASN PRO GLN SER SEQRES 4 A 179 VAL GLU GLY PRO LYS GLY PHE PRO ALA ALA GLY PRO PRO SEQRES 5 A 179 ASP GLY ARG ILE ALA SER ALA ASN GLY GLY SER GLY GLN SEQRES 6 A 179 ILE ASP PHE GLY LEU ASP LYS GLN THR ALA ASP HIS TRP SEQRES 7 A 179 VAL LYS GLN ASN ILE ARG GLY GLY PHE ASN THR PHE THR SEQRES 8 A 179 TRP HIS TYR THR ALA PRO HIS ALA THR SER LYS TRP HIS SEQRES 9 A 179 TYR TYR ILE THR LYS LYS ASN TRP ASN PRO ASN LYS PRO SEQRES 10 A 179 LEU SER ARG ASP GLU PHE GLU LEU ILE GLY THR VAL ASN SEQRES 11 A 179 HIS ASP GLY SER LYS ALA ASP THR ASN LEU THR HIS LYS SEQRES 12 A 179 ILE PHE VAL PRO THR ASP ARG SER GLY TYR HIS ILE ILE SEQRES 13 A 179 LEU GLY VAL TRP ASP VAL ALA ASP THR SER ASN ALA PHE SEQRES 14 A 179 TYR ASN VAL ILE ASP VAL ASN LEU THR LYS SEQRES 1 B 179 HIS GLY TYR ILE LYS GLU PRO VAL SER ARG ALA TYR MET SEQRES 2 B 179 GLY ALA LEU GLU LYS GLN THR MET GLY TRP THR ALA ALA SEQRES 3 B 179 ALA GLN LYS TYR GLY SER VAL ILE ASP ASN PRO GLN SER SEQRES 4 B 179 VAL GLU GLY PRO LYS GLY PHE PRO ALA ALA GLY PRO PRO SEQRES 5 B 179 ASP GLY ARG ILE ALA SER ALA ASN GLY GLY SER GLY GLN SEQRES 6 B 179 ILE ASP PHE GLY LEU ASP LYS GLN THR ALA ASP HIS TRP SEQRES 7 B 179 VAL LYS GLN ASN ILE ARG GLY GLY PHE ASN THR PHE THR SEQRES 8 B 179 TRP HIS TYR THR ALA PRO HIS ALA THR SER LYS TRP HIS SEQRES 9 B 179 TYR TYR ILE THR LYS LYS ASN TRP ASN PRO ASN LYS PRO SEQRES 10 B 179 LEU SER ARG ASP GLU PHE GLU LEU ILE GLY THR VAL ASN SEQRES 11 B 179 HIS ASP GLY SER LYS ALA ASP THR ASN LEU THR HIS LYS SEQRES 12 B 179 ILE PHE VAL PRO THR ASP ARG SER GLY TYR HIS ILE ILE SEQRES 13 B 179 LEU GLY VAL TRP ASP VAL ALA ASP THR SER ASN ALA PHE SEQRES 14 B 179 TYR ASN VAL ILE ASP VAL ASN LEU THR LYS HET CU A 301 1 HET EDO A 302 4 HET CA B 301 1 HET CU B 302 1 HET EDO B 303 4 HETNAM CU COPPER (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CU 2(CU 2+) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 CA CA 2+ FORMUL 8 HOH *282(H2 O) HELIX 1 AA1 SER A 36 GLY A 49 1 14 HELIX 2 AA2 GLY A 49 GLY A 58 1 10 HELIX 3 AA3 SER A 59 ASN A 63 5 5 HELIX 4 AA4 SER A 85 SER A 90 1 6 HELIX 5 AA5 PHE A 95 LYS A 99 5 5 HELIX 6 AA6 SER A 146 ASP A 148 5 3 HELIX 7 AA7 LYS A 162 ASN A 166 5 5 HELIX 8 AA8 SER B 36 GLY B 49 1 14 HELIX 9 AA9 GLY B 49 GLY B 58 1 10 HELIX 10 AB1 SER B 59 ASN B 63 5 5 HELIX 11 AB2 SER B 85 SER B 90 1 6 HELIX 12 AB3 PHE B 95 LYS B 99 5 5 HELIX 13 AB4 SER B 146 ASP B 148 5 3 HELIX 14 AB5 LYS B 162 ASN B 166 5 5 SHEET 1 AA1 3 GLY A 29 GLU A 33 0 SHEET 2 AA1 3 GLY A 113 TYR A 121 -1 O HIS A 120 N TYR A 30 SHEET 3 AA1 3 THR A 168 VAL A 173 -1 O HIS A 169 N PHE A 117 SHEET 1 AA2 3 GLU A 68 PRO A 70 0 SHEET 2 AA2 3 ASN A 194 THR A 205 -1 O ALA A 195 N GLY A 69 SHEET 3 AA2 3 GLN A 108 ARG A 111 1 N ILE A 110 O ASN A 203 SHEET 1 AA3 5 GLU A 68 PRO A 70 0 SHEET 2 AA3 5 ASN A 194 THR A 205 -1 O ALA A 195 N GLY A 69 SHEET 3 AA3 5 GLY A 179 VAL A 189 -1 N HIS A 181 O VAL A 202 SHEET 4 AA3 5 THR A 127 THR A 135 -1 N LYS A 129 O ASP A 188 SHEET 5 AA3 5 PHE A 150 ASN A 157 -1 O VAL A 156 N TRP A 130 SHEET 1 AA4 3 GLY B 29 GLU B 33 0 SHEET 2 AA4 3 GLY B 113 TYR B 121 -1 O HIS B 120 N TYR B 30 SHEET 3 AA4 3 THR B 168 VAL B 173 -1 O VAL B 173 N GLY B 113 SHEET 1 AA5 3 GLU B 68 PRO B 70 0 SHEET 2 AA5 3 ASN B 194 THR B 205 -1 O ALA B 195 N GLY B 69 SHEET 3 AA5 3 GLN B 108 ARG B 111 1 N ILE B 110 O THR B 205 SHEET 1 AA6 5 GLU B 68 PRO B 70 0 SHEET 2 AA6 5 ASN B 194 THR B 205 -1 O ALA B 195 N GLY B 69 SHEET 3 AA6 5 GLY B 179 VAL B 189 -1 N GLY B 185 O ASN B 198 SHEET 4 AA6 5 THR B 127 THR B 135 -1 N LYS B 129 O ASP B 188 SHEET 5 AA6 5 PHE B 150 ASN B 157 -1 O ILE B 153 N TYR B 132 LINK N HIS A 28 CU CU A 301 1555 1555 2.24 LINK ND1 HIS A 28 CU CU A 301 1555 1555 2.01 LINK NE2 HIS A 125 CU CU A 301 1555 1555 2.05 LINK CU CU A 301 O HOH A 412 1555 1555 1.97 LINK CU CU A 301 O HOH A 487 1555 1555 2.18 LINK N HIS B 28 CU CU B 302 1555 1555 2.25 LINK ND1 HIS B 28 CU CU B 302 1555 1555 2.01 LINK NE2 HIS B 125 CU CU B 302 1555 1555 2.02 LINK OD1 ASN B 166 CA CA B 301 1555 1555 2.36 LINK O THR B 168 CA CA B 301 1555 1555 2.33 LINK CA CA B 301 O HOH B 403 1555 1455 2.38 LINK CA CA B 301 O HOH B 499 1555 1555 2.45 LINK CA CA B 301 O HOH B 504 1555 1555 2.54 LINK CA CA B 301 O HOH B 528 1555 1555 2.64 LINK CA CA B 301 O HOH B 534 1555 1555 2.56 LINK CU CU B 302 O HOH B 454 1555 1555 2.25 LINK CU CU B 302 O HOH B 498 1555 1555 2.39 CISPEP 1 GLU A 33 PRO A 34 0 -14.49 CISPEP 2 PHE A 73 PRO A 74 0 11.89 CISPEP 3 GLU B 33 PRO B 34 0 -10.57 CISPEP 4 PHE B 73 PRO B 74 0 11.61 SITE 1 AC1 5 HIS A 28 HIS A 125 PHE A 196 HOH A 412 SITE 2 AC1 5 HOH A 487 SITE 1 AC2 3 GLN A 65 THR A 122 ALA A 123 SITE 1 AC3 7 ASN B 166 THR B 168 HOH B 403 HOH B 499 SITE 2 AC3 7 HOH B 504 HOH B 528 HOH B 534 SITE 1 AC4 5 HIS B 28 HIS B 125 PHE B 196 HOH B 454 SITE 2 AC4 5 HOH B 498 SITE 1 AC5 4 HIS B 28 GLN B 65 THR B 122 ALA B 123 CRYST1 34.779 73.482 75.457 90.00 100.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028753 0.000000 0.005278 0.00000 SCALE2 0.000000 0.013609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013474 0.00000