HEADER LYASE 03-MAR-16 5IK0 TITLE TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE WITH FPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-EPI-ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EAS; COMPND 5 EC: 4.2.3.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: EAS3, EAS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PH9GW KEYWDS TERPENE SYNTHASE, TEAS, FPP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KOO,Y.XU,G.V.LOUIE,M.BOWMAN,J.P.NOEL REVDAT 2 06-MAR-24 5IK0 1 JRNL REMARK REVDAT 1 05-OCT-16 5IK0 0 JRNL AUTH H.J.KOO,C.R.VICKERY,Y.XU,G.V.LOUIE,P.E.O'MAILLE,M.BOWMAN, JRNL AUTH 2 C.M.NARTEY,M.D.BURKART,J.P.NOEL JRNL TITL BIOSYNTHETIC POTENTIAL OF SESQUITERPENE SYNTHASES: PRODUCT JRNL TITL 2 PROFILES OF EGYPTIAN HENBANE PREMNASPIRODIENE SYNTHASE AND JRNL TITL 3 RELATED MUTANTS. JRNL REF J.ANTIBIOT. V. 69 524 2016 JRNL REFN ISSN 0021-8820 JRNL PMID 27328867 JRNL DOI 10.1038/JA.2016.68 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 59.7 REMARK 3 NUMBER OF REFLECTIONS : 31487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.9219 - 4.8916 0.92 4472 246 0.1311 0.1837 REMARK 3 2 4.8916 - 3.8830 0.89 4119 213 0.1293 0.1817 REMARK 3 3 3.8830 - 3.3923 0.63 2875 165 0.1550 0.2009 REMARK 3 4 3.3923 - 3.0822 0.65 2948 137 0.1870 0.2359 REMARK 3 5 3.0822 - 2.8613 0.66 2975 164 0.2190 0.2677 REMARK 3 6 2.8613 - 2.6926 0.66 2954 158 0.2201 0.2596 REMARK 3 7 2.6926 - 2.5577 0.57 2571 141 0.2295 0.2946 REMARK 3 8 2.5577 - 2.4464 0.40 1757 107 0.2319 0.2657 REMARK 3 9 2.4464 - 2.3522 0.39 1780 82 0.2315 0.2604 REMARK 3 10 2.3522 - 2.2710 0.39 1742 86 0.2432 0.3322 REMARK 3 11 2.2710 - 2.2000 0.38 1725 70 0.2769 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4485 REMARK 3 ANGLE : 1.083 6075 REMARK 3 CHIRALITY : 0.038 682 REMARK 3 PLANARITY : 0.004 770 REMARK 3 DIHEDRAL : 16.236 1656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0617 55.3737 21.8161 REMARK 3 T TENSOR REMARK 3 T11: 0.3839 T22: 0.2410 REMARK 3 T33: 0.3678 T12: -0.0385 REMARK 3 T13: 0.0211 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 2.2201 L22: 3.9379 REMARK 3 L33: 1.2536 L12: -0.2198 REMARK 3 L13: -0.2205 L23: 0.4242 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: -0.0854 S13: -0.5604 REMARK 3 S21: 0.3311 S22: -0.0682 S23: 0.6431 REMARK 3 S31: 0.0643 S32: -0.2185 S33: 0.0078 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8814 59.9384 26.3219 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.3004 REMARK 3 T33: 0.3877 T12: 0.0543 REMARK 3 T13: -0.1710 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 2.0870 L22: 5.3402 REMARK 3 L33: 6.1618 L12: 2.9657 REMARK 3 L13: 0.3589 L23: -0.6467 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.5226 S13: -0.1311 REMARK 3 S21: 0.7124 S22: -0.1296 S23: -0.6284 REMARK 3 S31: 0.1093 S32: 0.7630 S33: 0.0096 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9936 64.5055 9.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.2220 REMARK 3 T33: 0.4728 T12: -0.0395 REMARK 3 T13: 0.0170 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 2.9360 L22: 2.3219 REMARK 3 L33: 5.0405 L12: -0.2966 REMARK 3 L13: -0.3705 L23: 2.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0015 S12: 0.0415 S13: 0.0735 REMARK 3 S21: -0.0982 S22: 0.1471 S23: -0.7638 REMARK 3 S31: -0.3092 S32: 0.3969 S33: -0.0836 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6314 75.4345 21.2067 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.2937 REMARK 3 T33: 0.5227 T12: 0.0108 REMARK 3 T13: 0.0265 T23: -0.1318 REMARK 3 L TENSOR REMARK 3 L11: 1.7689 L22: 3.4425 REMARK 3 L33: 0.5726 L12: 0.3126 REMARK 3 L13: 0.1008 L23: 0.1380 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: -0.1654 S13: 0.4081 REMARK 3 S21: 0.0754 S22: -0.1047 S23: 1.0235 REMARK 3 S31: -0.1591 S32: -0.2193 S33: 0.0635 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 519 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3463 81.4337 16.9215 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.1792 REMARK 3 T33: 0.5092 T12: 0.0193 REMARK 3 T13: -0.0184 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 2.6689 L22: 5.2423 REMARK 3 L33: 3.7525 L12: 0.1039 REMARK 3 L13: -0.4392 L23: -1.8398 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: 0.1451 S13: 0.4236 REMARK 3 S21: -0.3282 S22: -0.1304 S23: 0.1733 REMARK 3 S31: -0.1890 S32: -0.0832 S33: 0.0622 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 520 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7329 64.4607 8.4841 REMARK 3 T TENSOR REMARK 3 T11: 0.4872 T22: 0.3963 REMARK 3 T33: 0.3244 T12: 0.0247 REMARK 3 T13: -0.0360 T23: -0.1020 REMARK 3 L TENSOR REMARK 3 L11: 8.4040 L22: 8.7421 REMARK 3 L33: 2.3744 L12: 4.7614 REMARK 3 L13: 0.6649 L23: -3.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.3932 S12: 0.6853 S13: 0.4943 REMARK 3 S21: -0.8323 S22: 0.2483 S23: 0.7701 REMARK 3 S31: -0.0143 S32: -0.1435 S33: 0.2221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31504 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 51.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 59.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08331 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58030 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPSO, PH 7, 100 MM MG ACETATE, REMARK 280 10% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.33500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.83000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.16750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.83000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.50250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.83000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.83000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.16750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.83000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.83000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.50250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 19 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 776 O HOH A 794 2.03 REMARK 500 O HOH A 761 O HOH A 780 2.14 REMARK 500 NH2 ARG A 15 OE1 GLU A 312 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 14 169.10 56.66 REMARK 500 ASN A 98 84.99 48.40 REMARK 500 ASN A 100 108.15 -46.40 REMARK 500 ASN A 133 -10.92 -179.07 REMARK 500 THR A 158 -167.77 -117.73 REMARK 500 ILE A 214 -72.79 -109.32 REMARK 500 TYR A 307 -52.94 -142.22 REMARK 500 TRP A 323 73.63 49.51 REMARK 500 ASP A 468 -71.95 -57.11 REMARK 500 HIS A 522 -6.81 61.92 REMARK 500 ASN A 523 53.86 93.71 REMARK 500 LYS A 532 -79.84 -53.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 ASP A 301 OD2 47.6 REMARK 620 3 ASP A 305 OD2 134.5 93.4 REMARK 620 4 FPP A 604 O1A 100.4 63.0 72.7 REMARK 620 5 FPP A 604 O1B 104.3 119.1 117.0 76.9 REMARK 620 6 HOH A 701 O 141.2 169.6 80.7 106.9 57.6 REMARK 620 7 HOH A 728 O 80.8 113.2 100.0 171.0 111.5 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD2 REMARK 620 2 ASP A 305 OD2 102.3 REMARK 620 3 FPP A 604 O1A 67.2 76.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD2 REMARK 620 2 GLU A 452 OE2 123.6 REMARK 620 3 FPP A 604 O2A 136.0 100.3 REMARK 620 4 FPP A 604 O3B 81.0 126.0 71.3 REMARK 620 5 HOH A 703 O 71.0 55.3 148.5 105.1 REMARK 620 6 HOH A 712 O 89.4 124.9 63.3 99.4 145.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FPP A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IK6 RELATED DB: PDB REMARK 900 RELATED ID: 5IK9 RELATED DB: PDB REMARK 900 RELATED ID: 5IKA RELATED DB: PDB DBREF 5IK0 A 1 548 UNP Q40577 5EAS_TOBAC 1 548 SEQADV 5IK0 GLY A -1 UNP Q40577 EXPRESSION TAG SEQADV 5IK0 SER A 0 UNP Q40577 EXPRESSION TAG SEQRES 1 A 550 GLY SER MET ALA SER ALA ALA VAL ALA ASN TYR GLU GLU SEQRES 2 A 550 GLU ILE VAL ARG PRO VAL ALA ASP PHE SER PRO SER LEU SEQRES 3 A 550 TRP GLY ASP GLN PHE LEU SER PHE SER ILE LYS ASN GLN SEQRES 4 A 550 VAL ALA GLU LYS TYR ALA LYS GLU ILE GLU ALA LEU LYS SEQRES 5 A 550 GLU GLN THR ARG ASN MET LEU LEU ALA THR GLY MET LYS SEQRES 6 A 550 LEU ALA ASP THR LEU ASN LEU ILE ASP THR ILE GLU ARG SEQRES 7 A 550 LEU GLY ILE SER TYR HIS PHE GLU LYS GLU ILE ASP ASP SEQRES 8 A 550 ILE LEU ASP GLN ILE TYR ASN GLN ASN SER ASN CYS ASN SEQRES 9 A 550 ASP LEU CYS THR SER ALA LEU GLN PHE ARG LEU LEU ARG SEQRES 10 A 550 GLN HIS GLY PHE ASN ILE SER PRO GLU ILE PHE SER LYS SEQRES 11 A 550 PHE GLN ASP GLU ASN GLY LYS PHE LYS GLU SER LEU ALA SEQRES 12 A 550 SER ASP VAL LEU GLY LEU LEU ASN LEU TYR GLU ALA SER SEQRES 13 A 550 HIS VAL ARG THR HIS ALA ASP ASP ILE LEU GLU ASP ALA SEQRES 14 A 550 LEU ALA PHE SER THR ILE HIS LEU GLU SER ALA ALA PRO SEQRES 15 A 550 HIS LEU LYS SER PRO LEU ARG GLU GLN VAL THR HIS ALA SEQRES 16 A 550 LEU GLU GLN CYS LEU HIS LYS GLY VAL PRO ARG VAL GLU SEQRES 17 A 550 THR ARG PHE PHE ILE SER SER ILE TYR ASP LYS GLU GLN SEQRES 18 A 550 SER LYS ASN ASN VAL LEU LEU ARG PHE ALA LYS LEU ASP SEQRES 19 A 550 PHE ASN LEU LEU GLN MET LEU HIS LYS GLN GLU LEU ALA SEQRES 20 A 550 GLN VAL SER ARG TRP TRP LYS ASP LEU ASP PHE VAL THR SEQRES 21 A 550 THR LEU PRO TYR ALA ARG ASP ARG VAL VAL GLU CYS TYR SEQRES 22 A 550 PHE TRP ALA LEU GLY VAL TYR PHE GLU PRO GLN TYR SER SEQRES 23 A 550 GLN ALA ARG VAL MET LEU VAL LYS THR ILE SER MET ILE SEQRES 24 A 550 SER ILE VAL ASP ASP THR PHE ASP ALA TYR GLY THR VAL SEQRES 25 A 550 LYS GLU LEU GLU ALA TYR THR ASP ALA ILE GLN ARG TRP SEQRES 26 A 550 ASP ILE ASN GLU ILE ASP ARG LEU PRO ASP TYR MET LYS SEQRES 27 A 550 ILE SER TYR LYS ALA ILE LEU ASP LEU TYR LYS ASP TYR SEQRES 28 A 550 GLU LYS GLU LEU SER SER ALA GLY ARG SER HIS ILE VAL SEQRES 29 A 550 CYS HIS ALA ILE GLU ARG MET LYS GLU VAL VAL ARG ASN SEQRES 30 A 550 TYR ASN VAL GLU SER THR TRP PHE ILE GLU GLY TYR THR SEQRES 31 A 550 PRO PRO VAL SER GLU TYR LEU SER ASN ALA LEU ALA THR SEQRES 32 A 550 THR THR TYR TYR TYR LEU ALA THR THR SER TYR LEU GLY SEQRES 33 A 550 MET LYS SER ALA THR GLU GLN ASP PHE GLU TRP LEU SER SEQRES 34 A 550 LYS ASN PRO LYS ILE LEU GLU ALA SER VAL ILE ILE CYS SEQRES 35 A 550 ARG VAL ILE ASP ASP THR ALA THR TYR GLU VAL GLU LYS SEQRES 36 A 550 SER ARG GLY GLN ILE ALA THR GLY ILE GLU CYS CYS MET SEQRES 37 A 550 ARG ASP TYR GLY ILE SER THR LYS GLU ALA MET ALA LYS SEQRES 38 A 550 PHE GLN ASN MET ALA GLU THR ALA TRP LYS ASP ILE ASN SEQRES 39 A 550 GLU GLY LEU LEU ARG PRO THR PRO VAL SER THR GLU PHE SEQRES 40 A 550 LEU THR PRO ILE LEU ASN LEU ALA ARG ILE VAL GLU VAL SEQRES 41 A 550 THR TYR ILE HIS ASN LEU ASP GLY TYR THR HIS PRO GLU SEQRES 42 A 550 LYS VAL LEU LYS PRO HIS ILE ILE ASN LEU LEU VAL ASP SEQRES 43 A 550 SER ILE LYS ILE HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET FPP A 604 24 HETNAM MG MAGNESIUM ION HETNAM FPP FARNESYL DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 FPP C15 H28 O7 P2 FORMUL 6 HOH *111(H2 O) HELIX 1 AA1 LYS A 35 LEU A 58 1 24 HELIX 2 AA2 LYS A 63 LEU A 77 1 15 HELIX 3 AA3 ILE A 79 HIS A 82 5 4 HELIX 4 AA4 PHE A 83 ASN A 96 1 14 HELIX 5 AA5 ASP A 103 HIS A 117 1 15 HELIX 6 AA6 SER A 122 GLN A 130 5 9 HELIX 7 AA7 LYS A 137 SER A 142 5 6 HELIX 8 AA8 ASP A 143 SER A 154 1 12 HELIX 9 AA9 HIS A 155 ARG A 157 5 3 HELIX 10 AB1 ASP A 161 GLU A 165 5 5 HELIX 11 AB2 ASP A 166 ALA A 179 1 14 HELIX 12 AB3 PRO A 180 LEU A 182 5 3 HELIX 13 AB4 PRO A 185 GLN A 196 1 12 HELIX 14 AB5 VAL A 202 ILE A 214 1 13 HELIX 15 AB6 TYR A 215 GLU A 218 5 4 HELIX 16 AB7 ASN A 222 ASP A 253 1 32 HELIX 17 AB8 ASP A 255 LEU A 260 1 6 HELIX 18 AB9 ARG A 266 TYR A 278 1 13 HELIX 19 AC1 GLU A 280 GLN A 282 5 3 HELIX 20 AC2 TYR A 283 TYR A 307 1 25 HELIX 21 AC3 THR A 309 TRP A 323 1 15 HELIX 22 AC4 ASP A 324 LEU A 331 5 8 HELIX 23 AC5 PRO A 332 LEU A 353 1 22 HELIX 24 AC6 SER A 354 GLY A 357 5 4 HELIX 25 AC7 ARG A 358 HIS A 360 5 3 HELIX 26 AC8 ILE A 361 GLY A 386 1 26 HELIX 27 AC9 PRO A 390 LEU A 399 1 10 HELIX 28 AD1 ALA A 400 THR A 402 5 3 HELIX 29 AD2 THR A 403 TYR A 412 1 10 HELIX 30 AD3 THR A 419 LYS A 428 1 10 HELIX 31 AD4 PRO A 430 THR A 448 1 19 HELIX 32 AD5 THR A 448 SER A 454 1 7 HELIX 33 AD6 THR A 460 GLY A 470 1 11 HELIX 34 AD7 SER A 472 LEU A 495 1 24 HELIX 35 AD8 SER A 502 PHE A 505 5 4 HELIX 36 AD9 LEU A 506 TYR A 520 1 15 HELIX 37 AE1 ILE A 521 LEU A 524 5 4 HELIX 38 AE2 HIS A 529 VAL A 543 1 15 LINK OD1 ASP A 301 MG MG A 602 1555 1555 2.07 LINK OD2 ASP A 301 MG MG A 602 1555 1555 3.00 LINK OD2 ASP A 301 MG MG A 603 1555 1555 2.79 LINK OD2 ASP A 305 MG MG A 602 1555 1555 2.82 LINK OD2 ASP A 305 MG MG A 603 1555 1555 2.64 LINK OD2 ASP A 444 MG MG A 601 1555 1555 2.75 LINK OE2 GLU A 452 MG MG A 601 1555 1555 2.77 LINK MG MG A 601 O2A FPP A 604 1555 1555 2.75 LINK MG MG A 601 O3B FPP A 604 1555 1555 2.10 LINK MG MG A 601 O HOH A 703 1555 1555 2.08 LINK MG MG A 601 O HOH A 712 1555 1555 2.08 LINK MG MG A 602 O1A FPP A 604 1555 1555 2.10 LINK MG MG A 602 O1B FPP A 604 1555 1555 2.98 LINK MG MG A 602 O HOH A 701 1555 1555 2.07 LINK MG MG A 602 O HOH A 728 1555 1555 2.07 LINK MG MG A 603 O1A FPP A 604 1555 1555 2.09 CISPEP 1 VAL A 14 ARG A 15 0 9.52 CISPEP 2 SER A 184 PRO A 185 0 7.38 CISPEP 3 ARG A 497 PRO A 498 0 -2.72 SITE 1 AC1 6 ASP A 444 THR A 448 GLU A 452 FPP A 604 SITE 2 AC1 6 HOH A 703 HOH A 712 SITE 1 AC2 6 ASP A 301 ASP A 305 MG A 603 FPP A 604 SITE 2 AC2 6 HOH A 701 HOH A 728 SITE 1 AC3 5 ARG A 264 ASP A 301 ASP A 305 MG A 602 SITE 2 AC3 5 FPP A 604 SITE 1 AC4 16 ARG A 264 TRP A 273 SER A 298 ASP A 301 SITE 2 AC4 16 ASP A 305 THR A 401 THR A 402 THR A 403 SITE 3 AC4 16 ARG A 441 ASP A 444 TYR A 520 MG A 601 SITE 4 AC4 16 MG A 602 MG A 603 HOH A 701 HOH A 712 CRYST1 127.660 127.660 124.670 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008021 0.00000