HEADER STRUCTURAL PROTEIN 03-MAR-16 5IK4 TITLE LAMININ A2LG45 C-FORM, APO. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT ALPHA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2730-3118; COMPND 5 SYNONYM: LAMININ M CHAIN,LAMININ-12 SUBUNIT ALPHA,LAMININ-2 SUBUNIT COMPND 6 ALPHA,LAMININ-4 SUBUNIT ALPHA,MEROSIN HEAVY CHAIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LAMA2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMIDD; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCEP-PU KEYWDS EXTRACELLULAR MATRIX, LIGAND BINDING, LG DOMAIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.C.BRIGGS,E.HOHENESTER,K.P.CAMPBELL REVDAT 5 10-JAN-24 5IK4 1 HETSYN REVDAT 4 29-JUL-20 5IK4 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-SEP-16 5IK4 1 JRNL REVDAT 2 24-AUG-16 5IK4 1 JRNL REVDAT 1 10-AUG-16 5IK4 0 JRNL AUTH D.C.BRIGGS,T.YOSHIDA-MORIGUCHI,T.ZHENG,D.VENZKE, JRNL AUTH 2 M.E.ANDERSON,A.STRAZZULLI,M.MORACCI,L.YU,E.HOHENESTER, JRNL AUTH 3 K.P.CAMPBELL JRNL TITL STRUCTURAL BASIS OF LAMININ BINDING TO THE LARGE GLYCANS ON JRNL TITL 2 DYSTROGLYCAN. JRNL REF NAT.CHEM.BIOL. V. 12 810 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27526028 JRNL DOI 10.1038/NCHEMBIO.2146 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 128753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 6556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.7336 - 3.9458 1.00 4328 228 0.1498 0.1655 REMARK 3 2 3.9458 - 3.1319 1.00 4162 221 0.1456 0.1645 REMARK 3 3 3.1319 - 2.7361 1.00 4135 227 0.1556 0.1772 REMARK 3 4 2.7361 - 2.4859 1.00 4138 198 0.1578 0.1766 REMARK 3 5 2.4859 - 2.3077 1.00 4122 213 0.1489 0.1631 REMARK 3 6 2.3077 - 2.1716 1.00 4149 182 0.1479 0.1806 REMARK 3 7 2.1716 - 2.0629 1.00 4059 228 0.1512 0.1792 REMARK 3 8 2.0629 - 1.9731 1.00 4129 206 0.1469 0.1751 REMARK 3 9 1.9731 - 1.8971 1.00 4072 214 0.1466 0.1869 REMARK 3 10 1.8971 - 1.8317 1.00 4059 212 0.1421 0.1676 REMARK 3 11 1.8317 - 1.7744 1.00 4097 215 0.1387 0.1717 REMARK 3 12 1.7744 - 1.7237 1.00 4087 210 0.1444 0.1731 REMARK 3 13 1.7237 - 1.6783 1.00 4043 227 0.1466 0.1819 REMARK 3 14 1.6783 - 1.6373 1.00 4041 254 0.1512 0.1828 REMARK 3 15 1.6373 - 1.6001 1.00 4009 255 0.1588 0.1959 REMARK 3 16 1.6001 - 1.5660 1.00 3996 275 0.1725 0.2213 REMARK 3 17 1.5660 - 1.5347 1.00 4032 237 0.1803 0.2077 REMARK 3 18 1.5347 - 1.5058 1.00 4048 231 0.1786 0.2049 REMARK 3 19 1.5058 - 1.4789 1.00 4029 241 0.1811 0.2131 REMARK 3 20 1.4789 - 1.4538 0.99 4016 253 0.1845 0.2173 REMARK 3 21 1.4538 - 1.4303 1.00 3996 218 0.1969 0.2348 REMARK 3 22 1.4303 - 1.4083 1.00 4070 206 0.2150 0.2471 REMARK 3 23 1.4083 - 1.3876 1.00 4075 198 0.2273 0.2458 REMARK 3 24 1.3876 - 1.3681 1.00 4033 201 0.2543 0.2746 REMARK 3 25 1.3681 - 1.3496 1.00 4052 197 0.2887 0.3067 REMARK 3 26 1.3496 - 1.3321 0.99 4067 195 0.2917 0.2990 REMARK 3 27 1.3321 - 1.3154 1.00 4006 199 0.3174 0.3546 REMARK 3 28 1.3154 - 1.2996 1.00 4083 215 0.3516 0.3768 REMARK 3 29 1.2996 - 1.2844 1.00 4019 221 0.3806 0.3813 REMARK 3 30 1.2844 - 1.2700 1.00 4045 179 0.4120 0.4484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3079 REMARK 3 ANGLE : 1.176 4180 REMARK 3 CHIRALITY : 0.098 480 REMARK 3 PLANARITY : 0.007 541 REMARK 3 DIHEDRAL : 16.161 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 55.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 1.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES/MOPS BUFFER 120MM REMARK 280 GLUCURONIC ACID 30% PEG8K/GLYCEROL MIXTURE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.68000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.68000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A4545 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2726 REMARK 465 PRO A 2727 REMARK 465 LEU A 2728 REMARK 465 ALA A 2729 REMARK 465 VAL A 2730 REMARK 465 PRO A 2731 REMARK 465 THR A 2732 REMARK 465 PRO A 2733 REMARK 465 ALA A 2734 REMARK 465 PHE A 2735 REMARK 465 PRO A 2736 REMARK 465 PHE A 2737 REMARK 465 PRO A 2738 REMARK 465 ALA A 2739 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A2852 CE NZ REMARK 470 LYS A2871 CG CD CE NZ REMARK 470 LYS A3095 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 2905 SG CYS A 2930 1.40 REMARK 500 HH11 ARG A 2766 O HOH A 4101 1.42 REMARK 500 OG1 THR A 2741 C1 A2G A 4003 1.57 REMARK 500 O HOH A 4487 O HOH A 4501 1.94 REMARK 500 O HOH A 4255 O HOH A 4483 1.95 REMARK 500 O HOH A 4392 O HOH A 4507 1.96 REMARK 500 O HOH A 4550 O HOH A 4558 2.02 REMARK 500 O HOH A 4440 O HOH A 4499 2.04 REMARK 500 O HOH A 4126 O HOH A 4470 2.04 REMARK 500 O HOH A 4113 O HOH A 4416 2.12 REMARK 500 O HOH A 4467 O HOH A 4567 2.13 REMARK 500 O HOH A 4277 O HOH A 4464 2.14 REMARK 500 NH1 ARG A 2766 O HOH A 4101 2.16 REMARK 500 O THR A 3117 O HOH A 4102 2.16 REMARK 500 O HOH A 4346 O HOH A 4495 2.17 REMARK 500 O HOH A 4402 O HOH A 4413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 4519 O HOH A 4519 3555 2.01 REMARK 500 O HOH A 4137 O HOH A 4446 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A2808 CB ASP A2808 CG 0.199 REMARK 500 CYS A2905 CB CYS A2905 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A2808 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 CYS A3115 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A2839 49.36 -97.69 REMARK 500 LYS A2852 -123.10 53.18 REMARK 500 ASP A2860 -122.88 50.40 REMARK 500 LYS A2870 -134.31 51.88 REMARK 500 LYS A2980 -68.40 -96.90 REMARK 500 MET A2981 -40.10 -148.82 REMARK 500 GLU A2991 -0.72 71.79 REMARK 500 GLU A3011 -44.66 74.52 REMARK 500 CYS A3017 45.00 -103.17 REMARK 500 LYS A3030 -107.60 56.18 REMARK 500 ASN A3057 71.16 -161.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 A2G A 4003 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A4001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2808 OD1 REMARK 620 2 ASP A2808 OD2 51.0 REMARK 620 3 LEU A2825 O 75.5 93.7 REMARK 620 4 ILE A2874 O 125.4 79.5 88.0 REMARK 620 5 ASP A2876 OD2 112.0 87.0 170.3 82.6 REMARK 620 6 HOH A4108 O 53.0 100.0 88.9 176.9 100.5 REMARK 620 7 HOH A4423 O 140.5 165.7 83.8 86.3 93.2 94.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A4002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2861 OD2 REMARK 620 2 ASP A2982 OD2 87.4 REMARK 620 3 ASN A2999 O 89.9 2.5 REMARK 620 4 SER A3053 O 89.7 2.7 2.0 REMARK 620 5 ASP A3055 OD2 87.6 2.8 4.0 2.5 REMARK 620 6 HOH A4447 O 87.9 1.0 2.4 1.9 1.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DYK RELATED DB: PDB REMARK 900 1DYK IS OUR ORIGINAL STRUCTURE OF THIS PROTEIN. THIS NEW DATA REMARK 900 CONTAINS MULTIPLE STRUCTURES WITH HIGHER RESOLUTION, DIFFERENT REMARK 900 SPACEGROUPS AND BOUND LIGANDS DBREF 5IK4 A 2730 3118 UNP Q60675 LAMA2_MOUSE 2730 3118 SEQADV 5IK4 ALA A 2726 UNP Q60675 EXPRESSION TAG SEQADV 5IK4 PRO A 2727 UNP Q60675 EXPRESSION TAG SEQADV 5IK4 LEU A 2728 UNP Q60675 EXPRESSION TAG SEQADV 5IK4 ALA A 2729 UNP Q60675 EXPRESSION TAG SEQADV 5IK4 GLU A 3011 UNP Q60675 GLY 3011 CONFLICT SEQRES 1 A 393 ALA PRO LEU ALA VAL PRO THR PRO ALA PHE PRO PHE PRO SEQRES 2 A 393 ALA PRO THR MET VAL HIS GLY PRO CYS VAL ALA GLU SER SEQRES 3 A 393 GLU PRO ALA LEU LEU THR GLY SER LYS GLN PHE GLY LEU SEQRES 4 A 393 SER ARG ASN SER HIS ILE ALA ILE ALA PHE ASP ASP THR SEQRES 5 A 393 LYS VAL LYS ASN ARG LEU THR ILE GLU LEU GLU VAL ARG SEQRES 6 A 393 THR GLU ALA GLU SER GLY LEU LEU PHE TYR MET ALA ARG SEQRES 7 A 393 ILE ASN HIS ALA ASP PHE ALA THR VAL GLN LEU ARG ASN SEQRES 8 A 393 GLY PHE PRO TYR PHE SER TYR ASP LEU GLY SER GLY ASP SEQRES 9 A 393 THR SER THR MET ILE PRO THR LYS ILE ASN ASP GLY GLN SEQRES 10 A 393 TRP HIS LYS ILE LYS ILE VAL ARG VAL LYS GLN GLU GLY SEQRES 11 A 393 ILE LEU TYR VAL ASP ASP ALA SER SER GLN THR ILE SER SEQRES 12 A 393 PRO LYS LYS ALA ASP ILE LEU ASP VAL VAL GLY ILE LEU SEQRES 13 A 393 TYR VAL GLY GLY LEU PRO ILE ASN TYR THR THR ARG ARG SEQRES 14 A 393 ILE GLY PRO VAL THR TYR SER LEU ASP GLY CYS VAL ARG SEQRES 15 A 393 ASN LEU HIS MET GLU GLN ALA PRO VAL ASP LEU ASP GLN SEQRES 16 A 393 PRO THR SER SER PHE HIS VAL GLY THR CYS PHE ALA ASN SEQRES 17 A 393 ALA GLU SER GLY THR TYR PHE ASP GLY THR GLY PHE ALA SEQRES 18 A 393 LYS ALA VAL GLY GLY PHE LYS VAL GLY LEU ASP LEU LEU SEQRES 19 A 393 VAL GLU PHE GLU PHE ARG THR THR ARG PRO THR GLY VAL SEQRES 20 A 393 LEU LEU GLY VAL SER SER GLN LYS MET ASP GLY MET GLY SEQRES 21 A 393 ILE GLU MET ILE ASP GLU LYS LEU MET PHE HIS VAL ASP SEQRES 22 A 393 ASN GLY ALA GLY ARG PHE THR ALA ILE TYR ASP ALA GLU SEQRES 23 A 393 ILE PRO GLY HIS MET CYS ASN GLY GLN TRP HIS LYS VAL SEQRES 24 A 393 THR ALA LYS LYS ILE LYS ASN ARG LEU GLU LEU VAL VAL SEQRES 25 A 393 ASP GLY ASN GLN VAL ASP ALA GLN SER PRO ASN SER ALA SEQRES 26 A 393 SER THR SER ALA ASP THR ASN ASP PRO VAL PHE VAL GLY SEQRES 27 A 393 GLY PHE PRO GLY GLY LEU ASN GLN PHE GLY LEU THR THR SEQRES 28 A 393 ASN ILE ARG PHE ARG GLY CYS ILE ARG SER LEU LYS LEU SEQRES 29 A 393 THR LYS GLY THR GLY LYS PRO LEU GLU VAL ASN PHE ALA SEQRES 30 A 393 LYS ALA LEU GLU LEU ARG GLY VAL GLN PRO VAL SER CYS SEQRES 31 A 393 PRO THR THR HET CA A4001 1 HET CA A4002 1 HET A2G A4003 28 HET NAG A4004 28 HET GOL A4005 14 HET GOL A4006 14 HETNAM CA CALCIUM ION HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 A2G C8 H15 N O6 FORMUL 5 NAG C8 H15 N O6 FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *479(H2 O) HELIX 1 AA1 ASP A 2775 LYS A 2780 5 6 HELIX 2 AA2 ASN A 3100 ALA A 3104 5 5 SHEET 1 AA1 2 THR A2741 MET A2742 0 SHEET 2 AA1 2 GLU A2750 SER A2751 -1 O GLU A2750 N MET A2742 SHEET 1 AA2 6 LYS A2760 GLN A2761 0 SHEET 2 AA2 6 GLY A2904 MET A2911 -1 O VAL A2906 N LYS A2760 SHEET 3 AA2 6 ARG A2782 THR A2791 -1 N ARG A2790 O CYS A2905 SHEET 4 AA2 6 HIS A2844 VAL A2851 -1 O ILE A2846 N LEU A2787 SHEET 5 AA2 6 GLU A2854 VAL A2859 -1 O TYR A2858 N LYS A2847 SHEET 6 AA2 6 ALA A2862 ILE A2867 -1 O THR A2866 N GLY A2855 SHEET 1 AA3 7 ASP A2829 MET A2833 0 SHEET 2 AA3 7 PHE A2818 ASP A2824 -1 N PHE A2821 O THR A2832 SHEET 3 AA3 7 PHE A2809 ARG A2815 -1 N GLN A2813 O TYR A2820 SHEET 4 AA3 7 GLY A2796 ALA A2802 -1 N GLY A2796 O LEU A2814 SHEET 5 AA3 7 ILE A2880 VAL A2883 -1 O TYR A2882 N TYR A2800 SHEET 6 AA3 7 HIS A2769 ALA A2773 -1 N ILE A2772 O LEU A2881 SHEET 7 AA3 7 SER A2923 PHE A2925 -1 O SER A2923 N ALA A2771 SHEET 1 AA4 2 ALA A2934 SER A2936 0 SHEET 2 AA4 2 SER A3114 PRO A3116 -1 O CYS A3115 N GLU A2935 SHEET 1 AA5 8 ARG A3003 TYR A3008 0 SHEET 2 AA5 8 LYS A2992 ASP A2998 -1 N LEU A2993 O TYR A3008 SHEET 3 AA5 8 GLY A2983 ILE A2989 -1 N GLU A2987 O MET A2994 SHEET 4 AA5 8 GLY A2971 SER A2977 -1 N GLY A2971 O MET A2988 SHEET 5 AA5 8 ASP A3058 VAL A3062 -1 O PHE A3061 N GLY A2975 SHEET 6 AA5 8 THR A2938 PHE A2952 -1 N ALA A2948 O VAL A3060 SHEET 7 AA5 8 ARG A3081 LYS A3091 -1 O GLY A3082 N PHE A2940 SHEET 8 AA5 8 LEU A3097 GLU A3098 -1 O LEU A3097 N LEU A3089 SHEET 1 AA6 7 ASN A3040 GLN A3045 0 SHEET 2 AA6 7 ARG A3032 VAL A3037 -1 N LEU A3033 O ALA A3044 SHEET 3 AA6 7 HIS A3022 ILE A3029 -1 N ILE A3029 O ARG A3032 SHEET 4 AA6 7 ASP A2957 THR A2966 -1 N LEU A2958 O LYS A3028 SHEET 5 AA6 7 ARG A3081 LYS A3091 -1 O THR A3090 N LEU A2959 SHEET 6 AA6 7 THR A2938 PHE A2952 -1 N PHE A2940 O GLY A3082 SHEET 7 AA6 7 GLU A3106 GLN A3111 -1 O GLU A3106 N LYS A2947 SSBOND 1 CYS A 2747 CYS A 3017 1555 1555 2.06 SSBOND 2 CYS A 2905 CYS A 2930 1555 1555 2.03 SSBOND 3 CYS A 3083 CYS A 3115 1555 1555 2.03 LINK ND2 ASN A2889 C1 NAG A4004 1555 1555 1.51 LINK OD1 ASP A2808 CA CA A4001 1555 1555 2.91 LINK OD2 ASP A2808 CA CA A4001 1555 1555 1.89 LINK O LEU A2825 CA CA A4001 1555 1555 2.10 LINK OD2 ASP A2861 CA CA A4002 1555 8445 2.16 LINK O ILE A2874 CA CA A4001 1555 1555 2.28 LINK OD2 ASP A2876 CA CA A4001 1555 1555 2.18 LINK OD2 ASP A2982 CA CA A4002 1555 1555 2.29 LINK O ASN A2999 CA CA A4002 1555 1555 2.24 LINK O SER A3053 CA CA A4002 1555 1555 2.14 LINK OD2 ASP A3055 CA CA A4002 1555 1555 2.22 LINK CA CA A4001 O HOH A4108 1555 1555 2.31 LINK CA CA A4001 O HOH A4423 1555 1555 2.46 LINK CA CA A4002 O HOH A4447 1555 1555 2.20 CRYST1 70.690 111.360 124.540 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014146 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008030 0.00000