HEADER LYASE 03-MAR-16 5IKA TITLE TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE WITH PPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-EPI-ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EAS; COMPND 5 EC: 4.2.3.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: EAS3, EAS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PH9GW KEYWDS TERPENE SYNTHASE, TEAS, DIPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KOO,Y.XU,G.V.LOUIE,M.BOWMAN,J.P.NOEL REVDAT 2 27-SEP-23 5IKA 1 JRNL REMARK LINK REVDAT 1 05-OCT-16 5IKA 0 JRNL AUTH H.J.KOO,C.R.VICKERY,Y.XU,G.V.LOUIE,P.E.O'MAILLE,M.BOWMAN, JRNL AUTH 2 C.M.NARTEY,M.D.BURKART,J.P.NOEL JRNL TITL BIOSYNTHETIC POTENTIAL OF SESQUITERPENE SYNTHASES: PRODUCT JRNL TITL 2 PROFILES OF EGYPTIAN HENBANE PREMNASPIRODIENE SYNTHASE AND JRNL TITL 3 RELATED MUTANTS. JRNL REF J.ANTIBIOT. V. 69 524 2016 JRNL REFN ISSN 0021-8820 JRNL PMID 27328867 JRNL DOI 10.1038/JA.2016.68 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.7415 - 5.7582 1.00 2922 149 0.1400 0.1794 REMARK 3 2 5.7582 - 4.5714 1.00 2759 163 0.1467 0.2126 REMARK 3 3 4.5714 - 3.9938 1.00 2753 136 0.1382 0.1499 REMARK 3 4 3.9938 - 3.6288 1.00 2725 135 0.1575 0.2133 REMARK 3 5 3.6288 - 3.3687 1.00 2702 151 0.1888 0.2379 REMARK 3 6 3.3687 - 3.1701 1.00 2703 130 0.2052 0.2534 REMARK 3 7 3.1701 - 3.0114 1.00 2685 137 0.2064 0.2671 REMARK 3 8 3.0114 - 2.8803 1.00 2691 133 0.2083 0.2167 REMARK 3 9 2.8803 - 2.7695 1.00 2655 165 0.2125 0.2492 REMARK 3 10 2.7695 - 2.6739 1.00 2665 125 0.2234 0.2653 REMARK 3 11 2.6739 - 2.5903 1.00 2678 131 0.2392 0.2464 REMARK 3 12 2.5903 - 2.5163 0.99 2657 132 0.2700 0.2963 REMARK 3 13 2.5163 - 2.4500 0.99 2642 157 0.2983 0.3558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4471 REMARK 3 ANGLE : 1.053 6057 REMARK 3 CHIRALITY : 0.035 682 REMARK 3 PLANARITY : 0.005 767 REMARK 3 DIHEDRAL : 15.309 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2311 55.1601 23.7678 REMARK 3 T TENSOR REMARK 3 T11: 0.5089 T22: 0.3060 REMARK 3 T33: 0.4335 T12: -0.0286 REMARK 3 T13: 0.0117 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.6733 L22: 4.0455 REMARK 3 L33: 2.1371 L12: -0.4991 REMARK 3 L13: 0.3272 L23: 0.3197 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: -0.3106 S13: -0.2867 REMARK 3 S21: 0.3649 S22: 0.1441 S23: 0.3159 REMARK 3 S31: 0.0035 S32: -0.1441 S33: -0.0622 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.5847 63.3379 17.1939 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.5177 REMARK 3 T33: 0.8031 T12: -0.0175 REMARK 3 T13: -0.1155 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 6.0778 L22: 5.1528 REMARK 3 L33: 7.9242 L12: -0.5335 REMARK 3 L13: -4.3155 L23: 3.7427 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.4199 S13: -0.1592 REMARK 3 S21: 0.0714 S22: 0.3908 S23: -0.9910 REMARK 3 S31: -0.0931 S32: 1.1792 S33: -0.2112 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3842 59.4503 9.4945 REMARK 3 T TENSOR REMARK 3 T11: 0.3618 T22: 0.3702 REMARK 3 T33: 0.4496 T12: -0.0495 REMARK 3 T13: 0.0067 T23: -0.1014 REMARK 3 L TENSOR REMARK 3 L11: 3.6724 L22: 0.7654 REMARK 3 L33: 3.0461 L12: -1.2981 REMARK 3 L13: -1.0993 L23: 0.2569 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.2326 S13: 0.0183 REMARK 3 S21: -0.1680 S22: 0.1986 S23: -0.2981 REMARK 3 S31: -0.0609 S32: 0.2242 S33: -0.0757 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6821 73.4206 22.7275 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 0.4910 REMARK 3 T33: 0.9936 T12: 0.0090 REMARK 3 T13: 0.0853 T23: -0.1428 REMARK 3 L TENSOR REMARK 3 L11: 3.1860 L22: 6.0618 REMARK 3 L33: 1.4970 L12: -0.8453 REMARK 3 L13: -0.4902 L23: 1.7437 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.2333 S13: 0.6501 REMARK 3 S21: -0.1487 S22: -0.2497 S23: 1.4276 REMARK 3 S31: -0.3340 S32: -0.4430 S33: 0.0963 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 359 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9882 87.6854 20.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.5903 T22: 0.4118 REMARK 3 T33: 1.0030 T12: 0.0214 REMARK 3 T13: -0.0017 T23: -0.1698 REMARK 3 L TENSOR REMARK 3 L11: 2.7276 L22: 6.7924 REMARK 3 L33: 2.3234 L12: 0.0934 REMARK 3 L13: -0.8530 L23: -2.6976 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.1157 S13: 0.7180 REMARK 3 S21: -0.0745 S22: 0.0990 S23: 0.8746 REMARK 3 S31: -0.4284 S32: -0.2103 S33: -0.2814 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4355 83.6291 16.0123 REMARK 3 T TENSOR REMARK 3 T11: 0.5122 T22: 0.3674 REMARK 3 T33: 0.8224 T12: 0.0300 REMARK 3 T13: -0.0960 T23: -0.1257 REMARK 3 L TENSOR REMARK 3 L11: 3.3169 L22: 7.1511 REMARK 3 L33: 4.1861 L12: -0.1845 REMARK 3 L13: -0.6490 L23: -2.5581 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.1882 S13: 0.6754 REMARK 3 S21: -0.7102 S22: -0.2189 S23: 0.2951 REMARK 3 S31: -0.1676 S32: -0.1394 S33: 0.0351 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5082 70.9841 14.4122 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.3548 REMARK 3 T33: 0.5883 T12: 0.0400 REMARK 3 T13: -0.0118 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 1.9355 L22: 4.5019 REMARK 3 L33: 1.9800 L12: 1.2369 REMARK 3 L13: -0.4301 L23: 0.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.2227 S13: 0.2312 REMARK 3 S21: -0.4099 S22: 0.0303 S23: 0.2642 REMARK 3 S31: -0.0661 S32: 0.0036 S33: 0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07405 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51740 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPSO, PH 7, 200 MM MG ACETATE, REMARK 280 16% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.69500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.03500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.84750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.03500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.54250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.03500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.03500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.84750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.03500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.03500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.54250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.69500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 773 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 19 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 749 O HOH A 770 1.93 REMARK 500 O HOH A 759 O HOH A 768 2.04 REMARK 500 O HOH A 722 O HOH A 753 2.07 REMARK 500 O HOH A 755 O HOH A 765 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 98 81.56 52.26 REMARK 500 CYS A 101 7.53 -168.60 REMARK 500 THR A 158 -168.38 -105.55 REMARK 500 ALA A 306 30.27 -167.79 REMARK 500 TYR A 307 -22.35 -167.44 REMARK 500 TRP A 323 72.05 53.12 REMARK 500 ARG A 455 42.87 -71.58 REMARK 500 LYS A 474 -71.86 -60.90 REMARK 500 VAL A 543 -64.81 -108.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 ASP A 305 OD1 111.4 REMARK 620 3 ASP A 305 OD2 115.4 48.9 REMARK 620 4 DPO A 604 O7 100.8 131.8 85.5 REMARK 620 5 HOH A 704 O 168.8 77.8 65.2 68.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD2 REMARK 620 2 ASP A 305 OD2 102.5 REMARK 620 3 DPO A 604 O2 106.5 142.2 REMARK 620 4 DPO A 604 O4 138.5 109.9 60.2 REMARK 620 5 DPO A 604 O7 107.7 83.8 109.2 53.0 REMARK 620 6 HOH A 701 O 167.5 68.2 79.0 53.9 80.2 REMARK 620 7 HOH A 743 O 85.5 77.4 81.3 125.8 159.0 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD1 REMARK 620 2 GLU A 452 OE2 141.9 REMARK 620 3 DPO A 604 O4 112.1 102.3 REMARK 620 4 DPO A 604 O5 103.6 108.4 57.9 REMARK 620 5 HOH A 727 O 78.5 73.1 161.9 106.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IK0 RELATED DB: PDB REMARK 900 RELATED ID: 5IK6 RELATED DB: PDB REMARK 900 RELATED ID: 5IK9 RELATED DB: PDB REMARK 900 RELATED ID: 5IKH RELATED DB: PDB REMARK 900 RELATED ID: 5IL3 RELATED DB: PDB REMARK 900 RELATED ID: 5IL8 RELATED DB: PDB REMARK 900 RELATED ID: 5ILD RELATED DB: PDB REMARK 900 RELATED ID: 5ILH RELATED DB: PDB REMARK 900 RELATED ID: 5ILI RELATED DB: PDB REMARK 900 RELATED ID: 5ILJ RELATED DB: PDB REMARK 900 RELATED ID: 5ILK RELATED DB: PDB REMARK 900 RELATED ID: 5ILY RELATED DB: PDB REMARK 900 RELATED ID: 5ILZ RELATED DB: PDB REMARK 900 RELATED ID: 5IM1 RELATED DB: PDB DBREF 5IKA A 1 548 UNP Q40577 5EAS_TOBAC 1 548 SEQADV 5IKA GLY A -1 UNP Q40577 EXPRESSION TAG SEQADV 5IKA SER A 0 UNP Q40577 EXPRESSION TAG SEQRES 1 A 550 GLY SER MET ALA SER ALA ALA VAL ALA ASN TYR GLU GLU SEQRES 2 A 550 GLU ILE VAL ARG PRO VAL ALA ASP PHE SER PRO SER LEU SEQRES 3 A 550 TRP GLY ASP GLN PHE LEU SER PHE SER ILE LYS ASN GLN SEQRES 4 A 550 VAL ALA GLU LYS TYR ALA LYS GLU ILE GLU ALA LEU LYS SEQRES 5 A 550 GLU GLN THR ARG ASN MET LEU LEU ALA THR GLY MET LYS SEQRES 6 A 550 LEU ALA ASP THR LEU ASN LEU ILE ASP THR ILE GLU ARG SEQRES 7 A 550 LEU GLY ILE SER TYR HIS PHE GLU LYS GLU ILE ASP ASP SEQRES 8 A 550 ILE LEU ASP GLN ILE TYR ASN GLN ASN SER ASN CYS ASN SEQRES 9 A 550 ASP LEU CYS THR SER ALA LEU GLN PHE ARG LEU LEU ARG SEQRES 10 A 550 GLN HIS GLY PHE ASN ILE SER PRO GLU ILE PHE SER LYS SEQRES 11 A 550 PHE GLN ASP GLU ASN GLY LYS PHE LYS GLU SER LEU ALA SEQRES 12 A 550 SER ASP VAL LEU GLY LEU LEU ASN LEU TYR GLU ALA SER SEQRES 13 A 550 HIS VAL ARG THR HIS ALA ASP ASP ILE LEU GLU ASP ALA SEQRES 14 A 550 LEU ALA PHE SER THR ILE HIS LEU GLU SER ALA ALA PRO SEQRES 15 A 550 HIS LEU LYS SER PRO LEU ARG GLU GLN VAL THR HIS ALA SEQRES 16 A 550 LEU GLU GLN CYS LEU HIS LYS GLY VAL PRO ARG VAL GLU SEQRES 17 A 550 THR ARG PHE PHE ILE SER SER ILE TYR ASP LYS GLU GLN SEQRES 18 A 550 SER LYS ASN ASN VAL LEU LEU ARG PHE ALA LYS LEU ASP SEQRES 19 A 550 PHE ASN LEU LEU GLN MET LEU HIS LYS GLN GLU LEU ALA SEQRES 20 A 550 GLN VAL SER ARG TRP TRP LYS ASP LEU ASP PHE VAL THR SEQRES 21 A 550 THR LEU PRO TYR ALA ARG ASP ARG VAL VAL GLU CYS TYR SEQRES 22 A 550 PHE TRP ALA LEU GLY VAL TYR PHE GLU PRO GLN TYR SER SEQRES 23 A 550 GLN ALA ARG VAL MET LEU VAL LYS THR ILE SER MET ILE SEQRES 24 A 550 SER ILE VAL ASP ASP THR PHE ASP ALA TYR GLY THR VAL SEQRES 25 A 550 LYS GLU LEU GLU ALA TYR THR ASP ALA ILE GLN ARG TRP SEQRES 26 A 550 ASP ILE ASN GLU ILE ASP ARG LEU PRO ASP TYR MET LYS SEQRES 27 A 550 ILE SER TYR LYS ALA ILE LEU ASP LEU TYR LYS ASP TYR SEQRES 28 A 550 GLU LYS GLU LEU SER SER ALA GLY ARG SER HIS ILE VAL SEQRES 29 A 550 CYS HIS ALA ILE GLU ARG MET LYS GLU VAL VAL ARG ASN SEQRES 30 A 550 TYR ASN VAL GLU SER THR TRP PHE ILE GLU GLY TYR THR SEQRES 31 A 550 PRO PRO VAL SER GLU TYR LEU SER ASN ALA LEU ALA THR SEQRES 32 A 550 THR THR TYR TYR TYR LEU ALA THR THR SER TYR LEU GLY SEQRES 33 A 550 MET LYS SER ALA THR GLU GLN ASP PHE GLU TRP LEU SER SEQRES 34 A 550 LYS ASN PRO LYS ILE LEU GLU ALA SER VAL ILE ILE CYS SEQRES 35 A 550 ARG VAL ILE ASP ASP THR ALA THR TYR GLU VAL GLU LYS SEQRES 36 A 550 SER ARG GLY GLN ILE ALA THR GLY ILE GLU CYS CYS MET SEQRES 37 A 550 ARG ASP TYR GLY ILE SER THR LYS GLU ALA MET ALA LYS SEQRES 38 A 550 PHE GLN ASN MET ALA GLU THR ALA TRP LYS ASP ILE ASN SEQRES 39 A 550 GLU GLY LEU LEU ARG PRO THR PRO VAL SER THR GLU PHE SEQRES 40 A 550 LEU THR PRO ILE LEU ASN LEU ALA ARG ILE VAL GLU VAL SEQRES 41 A 550 THR TYR ILE HIS ASN LEU ASP GLY TYR THR HIS PRO GLU SEQRES 42 A 550 LYS VAL LEU LYS PRO HIS ILE ILE ASN LEU LEU VAL ASP SEQRES 43 A 550 SER ILE LYS ILE HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET DPO A 604 9 HETNAM MG MAGNESIUM ION HETNAM DPO DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 DPO O7 P2 4- FORMUL 6 HOH *73(H2 O) HELIX 1 AA1 LYS A 35 LEU A 58 1 24 HELIX 2 AA2 LYS A 63 LEU A 77 1 15 HELIX 3 AA3 ILE A 79 HIS A 82 5 4 HELIX 4 AA4 PHE A 83 ASN A 96 1 14 HELIX 5 AA5 ASP A 103 HIS A 117 1 15 HELIX 6 AA6 SER A 122 GLN A 130 5 9 HELIX 7 AA7 LYS A 137 ALA A 141 5 5 HELIX 8 AA8 ASP A 143 SER A 154 1 12 HELIX 9 AA9 HIS A 155 ARG A 157 5 3 HELIX 10 AB1 ASP A 161 GLU A 165 5 5 HELIX 11 AB2 ASP A 166 ALA A 179 1 14 HELIX 12 AB3 PRO A 180 LEU A 182 5 3 HELIX 13 AB4 PRO A 185 GLN A 196 1 12 HELIX 14 AB5 VAL A 202 ILE A 214 1 13 HELIX 15 AB6 TYR A 215 GLU A 218 5 4 HELIX 16 AB7 ASN A 222 ASP A 255 1 34 HELIX 17 AB8 ASP A 255 LEU A 260 1 6 HELIX 18 AB9 ARG A 266 TYR A 278 1 13 HELIX 19 AC1 GLU A 280 GLN A 282 5 3 HELIX 20 AC2 TYR A 283 TYR A 307 1 25 HELIX 21 AC3 THR A 309 TRP A 323 1 15 HELIX 22 AC4 ASP A 324 LEU A 331 5 8 HELIX 23 AC5 PRO A 332 LEU A 353 1 22 HELIX 24 AC6 ARG A 358 HIS A 360 5 3 HELIX 25 AC7 ILE A 361 GLY A 386 1 26 HELIX 26 AC8 PRO A 390 LEU A 399 1 10 HELIX 27 AC9 ALA A 400 THR A 402 5 3 HELIX 28 AD1 THR A 403 TYR A 412 1 10 HELIX 29 AD2 THR A 419 LYS A 428 1 10 HELIX 30 AD3 PRO A 430 THR A 448 1 19 HELIX 31 AD4 THR A 448 SER A 454 1 7 HELIX 32 AD5 THR A 460 GLY A 470 1 11 HELIX 33 AD6 SER A 472 LEU A 495 1 24 HELIX 34 AD7 SER A 502 TYR A 520 1 19 HELIX 35 AD8 ILE A 521 LEU A 524 5 4 HELIX 36 AD9 VAL A 533 VAL A 543 1 11 LINK OD1 ASP A 301 MG MG A 602 1555 1555 2.07 LINK OD2 ASP A 301 MG MG A 603 1555 1555 2.08 LINK OD1 ASP A 305 MG MG A 602 1555 1555 2.07 LINK OD2 ASP A 305 MG MG A 602 1555 1555 2.91 LINK OD2 ASP A 305 MG MG A 603 1555 1555 2.33 LINK OD1 ASP A 444 MG MG A 601 1555 1555 2.08 LINK OE2 GLU A 452 MG MG A 601 1555 1555 2.08 LINK MG MG A 601 O4 DPO A 604 1555 1555 2.68 LINK MG MG A 601 O5 DPO A 604 1555 1555 2.10 LINK MG MG A 601 O HOH A 727 1555 1555 2.50 LINK MG MG A 602 O7 DPO A 604 1555 1555 2.10 LINK MG MG A 602 O HOH A 704 1555 1555 2.18 LINK MG MG A 603 O2 DPO A 604 1555 1555 2.10 LINK MG MG A 603 O4 DPO A 604 1555 1555 2.64 LINK MG MG A 603 O7 DPO A 604 1555 1555 2.80 LINK MG MG A 603 O HOH A 701 1555 1555 2.20 LINK MG MG A 603 O HOH A 743 1555 1555 2.36 CISPEP 1 SER A 184 PRO A 185 0 5.85 CISPEP 2 ARG A 497 PRO A 498 0 -8.76 SITE 1 AC1 5 ASP A 444 THR A 448 GLU A 452 DPO A 604 SITE 2 AC1 5 HOH A 727 SITE 1 AC2 6 ASP A 301 ASP A 305 GLU A 379 MG A 603 SITE 2 AC2 6 DPO A 604 HOH A 704 SITE 1 AC3 6 ASP A 301 ASP A 305 MG A 602 DPO A 604 SITE 2 AC3 6 HOH A 701 HOH A 743 SITE 1 AC4 13 ARG A 264 ASP A 301 ASP A 305 THR A 401 SITE 2 AC4 13 ARG A 441 ASP A 444 GLU A 452 MG A 601 SITE 3 AC4 13 MG A 602 MG A 603 HOH A 701 HOH A 704 SITE 4 AC4 13 HOH A 743 CRYST1 126.070 126.070 123.390 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008104 0.00000