HEADER OXIDOREDUCTASE 03-MAR-16 5IKI TITLE CYP106A2 WITH SUBSTRATE ABIETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450(MEG); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: STEROID 15-BETA-HYDROXYLASE,STEROID 15-BETA-MONOOXYGENASE; COMPND 5 EC: 1.14.99.-,1.14.15.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 ATCC: ATCC 13368; SOURCE 5 GENE: CYP106A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKKHC KEYWDS MONO-OXYGENASE, CYTOCHROME P450, 15-BETA-HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JANOCHA,Y.CARIUS,R.BERNHARDT,C.R.D.LANCASTER REVDAT 3 10-JAN-24 5IKI 1 REMARK REVDAT 2 12-JUN-19 5IKI 1 AUTHOR REVDAT 1 25-MAY-16 5IKI 0 JRNL AUTH S.JANOCHA,Y.CARIUS,M.HUTTER,C.R.LANCASTER,R.BERNHARDT JRNL TITL CRYSTAL STRUCTURE OF CYP106A2 IN SUBSTRATE-FREE AND JRNL TITL 2 SUBSTRATE-BOUND FORM. JRNL REF CHEMBIOCHEM V. 17 852 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 26864272 JRNL DOI 10.1002/CBIC.201500524 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BLEIF,F.HANNEMANN,M.LISUREK,J.P.VON KRIES,J.ZAPP, REMARK 1 AUTH 2 M.DIETZEN,I.ANTES,R.BERNHARDT REMARK 1 TITL IDENTIFICATION OF CYP106A2 AS A REGIOSELECTIVE ALLYLIC REMARK 1 TITL 2 BACTERIAL DITERPENE HYDROXYLASE. REMARK 1 REF CHEMBIOCHEM V. 12 576 2011 REMARK 1 REFN ESSN 1439-7633 REMARK 1 PMID 21271628 REMARK 1 DOI 10.1002/CBIC.201000404 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 29207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.05000 REMARK 3 B22 (A**2) : -4.53000 REMARK 3 B33 (A**2) : -2.40000 REMARK 3 B12 (A**2) : -1.71000 REMARK 3 B13 (A**2) : 4.86000 REMARK 3 B23 (A**2) : -0.51000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.670 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.309 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.552 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6503 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6224 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8847 ; 1.518 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14351 ; 1.068 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 777 ; 6.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;35.578 ;24.527 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1136 ;17.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;20.877 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 991 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7223 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1429 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3123 ; 4.298 ; 6.147 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3122 ; 4.290 ; 6.146 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3895 ; 6.510 ; 9.210 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3896 ; 6.511 ; 9.211 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3380 ; 4.315 ; 6.467 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3381 ; 4.315 ; 6.468 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4953 ; 6.892 ; 9.519 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7687 ; 9.622 ;48.775 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7688 ; 9.621 ;48.779 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 409 B 4 409 21173 0.18 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1.1 REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 78.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.820 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.11 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 12.02.08 REMARK 200 STARTING MODEL: 1F4T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 AMMONIUM ACETATE SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 68 REMARK 465 THR A 69 REMARK 465 THR A 70 REMARK 465 ILE A 71 REMARK 465 SER A 72 REMARK 465 VAL A 73 REMARK 465 GLY A 74 REMARK 465 THR A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 465 PHE A 176 REMARK 465 ASP A 177 REMARK 465 ARG A 178 REMARK 465 GLU A 179 REMARK 465 LYS A 180 REMARK 465 GLN A 181 REMARK 465 GLU A 182 REMARK 465 GLU A 183 REMARK 465 VAL A 184 REMARK 465 ASP A 185 REMARK 465 MET A 410 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 177 REMARK 465 ARG B 178 REMARK 465 GLU B 179 REMARK 465 LYS B 180 REMARK 465 GLN B 181 REMARK 465 GLU B 182 REMARK 465 GLU B 183 REMARK 465 VAL B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 SER A 81 OG REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 THR B 108 OG1 CG2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 185 CG OD1 OD2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 LEU B 187 CG CD1 CD2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 GLN B 189 CG CD OE1 NE2 REMARK 470 VAL B 190 CG1 CG2 REMARK 470 MET B 410 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 167 OG1 THR B 171 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 53.67 -147.25 REMARK 500 VAL A 82 118.28 -168.31 REMARK 500 GLU A 90 52.98 -108.93 REMARK 500 LEU A 142 -48.48 -152.20 REMARK 500 VAL A 245 -63.14 -109.88 REMARK 500 PHE A 289 63.40 -110.53 REMARK 500 ASN A 323 -1.11 -58.62 REMARK 500 ASP A 331 62.27 38.52 REMARK 500 THR A 396 48.80 -108.11 REMARK 500 ASP B 33 54.46 -149.02 REMARK 500 GLU B 84 -39.28 -34.26 REMARK 500 GLU B 90 46.24 -105.53 REMARK 500 ALA B 105 -71.67 -31.61 REMARK 500 THR B 108 73.58 -164.95 REMARK 500 PRO B 109 -87.62 -134.72 REMARK 500 GLN B 113 -63.72 -23.63 REMARK 500 LEU B 142 -48.41 -153.33 REMARK 500 ASP B 161 30.69 -96.01 REMARK 500 SER B 221 -120.71 59.91 REMARK 500 MET B 227 -32.82 -169.83 REMARK 500 VAL B 245 -74.13 -129.74 REMARK 500 PHE B 289 61.71 -112.77 REMARK 500 ASN B 323 -3.06 -57.29 REMARK 500 ASP B 331 56.73 39.75 REMARK 500 THR B 396 46.90 -108.81 REMARK 500 ARG B 409 -170.22 56.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 HEM A 501 NA 97.4 REMARK 620 3 HEM A 501 NB 81.7 88.8 REMARK 620 4 HEM A 501 NC 81.5 177.3 88.5 REMARK 620 5 HEM A 501 ND 95.9 91.7 177.6 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 355 SG REMARK 620 2 HEM B 501 NA 98.4 REMARK 620 3 HEM B 501 NB 84.2 88.0 REMARK 620 4 HEM B 501 NC 81.0 176.2 88.2 REMARK 620 5 HEM B 501 ND 93.3 92.2 177.5 91.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A9H B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YT3 RELATED DB: PDB REMARK 900 4YT3 CONTAINS THE SAME PROTEIN WITHOUT SUBSTRATE DBREF 5IKI A 1 410 UNP Q06069 CPXM_BACME 1 410 DBREF 5IKI B 1 410 UNP Q06069 CPXM_BACME 1 410 SEQRES 1 A 410 MET LYS GLU VAL ILE ALA VAL LYS GLU ILE THR ARG PHE SEQRES 2 A 410 LYS THR ARG THR GLU GLU PHE SER PRO TYR ALA TRP CYS SEQRES 3 A 410 LYS ARG MET LEU GLU ASN ASP PRO VAL SER TYR HIS GLU SEQRES 4 A 410 GLY THR ASP THR TRP ASN VAL PHE LYS TYR GLU ASP VAL SEQRES 5 A 410 LYS ARG VAL LEU SER ASP TYR LYS HIS PHE SER SER VAL SEQRES 6 A 410 ARG LYS ARG THR THR ILE SER VAL GLY THR ASP SER GLU SEQRES 7 A 410 GLU GLY SER VAL PRO GLU LYS ILE GLN ILE THR GLU SER SEQRES 8 A 410 ASP PRO PRO ASP HIS ARG LYS ARG ARG SER LEU LEU ALA SEQRES 9 A 410 ALA ALA PHE THR PRO ARG SER LEU GLN ASN TRP GLU PRO SEQRES 10 A 410 ARG ILE GLN GLU ILE ALA ASP GLU LEU ILE GLY GLN MET SEQRES 11 A 410 ASP GLY GLY THR GLU ILE ASP ILE VAL ALA SER LEU ALA SEQRES 12 A 410 SER PRO LEU PRO ILE ILE VAL MET ALA ASP LEU MET GLY SEQRES 13 A 410 VAL PRO SER LYS ASP ARG LEU LEU PHE LYS LYS TRP VAL SEQRES 14 A 410 ASP THR LEU PHE LEU PRO PHE ASP ARG GLU LYS GLN GLU SEQRES 15 A 410 GLU VAL ASP LYS LEU LYS GLN VAL ALA ALA LYS GLU TYR SEQRES 16 A 410 TYR GLN TYR LEU TYR PRO ILE VAL VAL GLN LYS ARG LEU SEQRES 17 A 410 ASN PRO ALA ASP ASP ILE ILE SER ASP LEU LEU LYS SER SEQRES 18 A 410 GLU VAL ASP GLY GLU MET PHE THR ASP ASP GLU VAL VAL SEQRES 19 A 410 ARG THR THR MET LEU ILE LEU GLY ALA GLY VAL GLU THR SEQRES 20 A 410 THR SER HIS LEU LEU ALA ASN SER PHE TYR SER LEU LEU SEQRES 21 A 410 TYR ASP ASP LYS GLU VAL TYR GLN GLU LEU HIS GLU ASN SEQRES 22 A 410 LEU ASP LEU VAL PRO GLN ALA VAL GLU GLU MET LEU ARG SEQRES 23 A 410 PHE ARG PHE ASN LEU ILE LYS LEU ASP ARG THR VAL LYS SEQRES 24 A 410 GLU ASP ASN ASP LEU LEU GLY VAL GLU LEU LYS GLU GLY SEQRES 25 A 410 ASP SER VAL VAL VAL TRP MET SER ALA ALA ASN MET ASP SEQRES 26 A 410 GLU GLU MET PHE GLU ASP PRO PHE THR LEU ASN ILE HIS SEQRES 27 A 410 ARG PRO ASN ASN LYS LYS HIS LEU THR PHE GLY ASN GLY SEQRES 28 A 410 PRO HIS PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU SEQRES 29 A 410 ALA LYS ILE ALA LEU THR ALA PHE LEU LYS LYS PHE LYS SEQRES 30 A 410 HIS ILE GLU ALA VAL PRO SER PHE GLN LEU GLU GLU ASN SEQRES 31 A 410 LEU THR ASP SER ALA THR GLY GLN THR LEU THR SER LEU SEQRES 32 A 410 PRO LEU LYS ALA SER ARG MET SEQRES 1 B 410 MET LYS GLU VAL ILE ALA VAL LYS GLU ILE THR ARG PHE SEQRES 2 B 410 LYS THR ARG THR GLU GLU PHE SER PRO TYR ALA TRP CYS SEQRES 3 B 410 LYS ARG MET LEU GLU ASN ASP PRO VAL SER TYR HIS GLU SEQRES 4 B 410 GLY THR ASP THR TRP ASN VAL PHE LYS TYR GLU ASP VAL SEQRES 5 B 410 LYS ARG VAL LEU SER ASP TYR LYS HIS PHE SER SER VAL SEQRES 6 B 410 ARG LYS ARG THR THR ILE SER VAL GLY THR ASP SER GLU SEQRES 7 B 410 GLU GLY SER VAL PRO GLU LYS ILE GLN ILE THR GLU SER SEQRES 8 B 410 ASP PRO PRO ASP HIS ARG LYS ARG ARG SER LEU LEU ALA SEQRES 9 B 410 ALA ALA PHE THR PRO ARG SER LEU GLN ASN TRP GLU PRO SEQRES 10 B 410 ARG ILE GLN GLU ILE ALA ASP GLU LEU ILE GLY GLN MET SEQRES 11 B 410 ASP GLY GLY THR GLU ILE ASP ILE VAL ALA SER LEU ALA SEQRES 12 B 410 SER PRO LEU PRO ILE ILE VAL MET ALA ASP LEU MET GLY SEQRES 13 B 410 VAL PRO SER LYS ASP ARG LEU LEU PHE LYS LYS TRP VAL SEQRES 14 B 410 ASP THR LEU PHE LEU PRO PHE ASP ARG GLU LYS GLN GLU SEQRES 15 B 410 GLU VAL ASP LYS LEU LYS GLN VAL ALA ALA LYS GLU TYR SEQRES 16 B 410 TYR GLN TYR LEU TYR PRO ILE VAL VAL GLN LYS ARG LEU SEQRES 17 B 410 ASN PRO ALA ASP ASP ILE ILE SER ASP LEU LEU LYS SER SEQRES 18 B 410 GLU VAL ASP GLY GLU MET PHE THR ASP ASP GLU VAL VAL SEQRES 19 B 410 ARG THR THR MET LEU ILE LEU GLY ALA GLY VAL GLU THR SEQRES 20 B 410 THR SER HIS LEU LEU ALA ASN SER PHE TYR SER LEU LEU SEQRES 21 B 410 TYR ASP ASP LYS GLU VAL TYR GLN GLU LEU HIS GLU ASN SEQRES 22 B 410 LEU ASP LEU VAL PRO GLN ALA VAL GLU GLU MET LEU ARG SEQRES 23 B 410 PHE ARG PHE ASN LEU ILE LYS LEU ASP ARG THR VAL LYS SEQRES 24 B 410 GLU ASP ASN ASP LEU LEU GLY VAL GLU LEU LYS GLU GLY SEQRES 25 B 410 ASP SER VAL VAL VAL TRP MET SER ALA ALA ASN MET ASP SEQRES 26 B 410 GLU GLU MET PHE GLU ASP PRO PHE THR LEU ASN ILE HIS SEQRES 27 B 410 ARG PRO ASN ASN LYS LYS HIS LEU THR PHE GLY ASN GLY SEQRES 28 B 410 PRO HIS PHE CYS LEU GLY ALA PRO LEU ALA ARG LEU GLU SEQRES 29 B 410 ALA LYS ILE ALA LEU THR ALA PHE LEU LYS LYS PHE LYS SEQRES 30 B 410 HIS ILE GLU ALA VAL PRO SER PHE GLN LEU GLU GLU ASN SEQRES 31 B 410 LEU THR ASP SER ALA THR GLY GLN THR LEU THR SER LEU SEQRES 32 B 410 PRO LEU LYS ALA SER ARG MET HET HEM A 501 43 HET HEM B 501 43 HET A9H B 502 22 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM A9H ABIETIC ACID HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 A9H C20 H30 O2 FORMUL 6 HOH *54(H2 O) HELIX 1 AA1 ALA A 6 ARG A 12 1 7 HELIX 2 AA2 THR A 15 SER A 21 1 7 HELIX 3 AA3 PRO A 22 ASP A 33 1 12 HELIX 4 AA4 LYS A 48 ASP A 58 1 11 HELIX 5 AA5 PRO A 83 GLN A 87 5 5 HELIX 6 AA6 PRO A 94 ALA A 105 1 12 HELIX 7 AA7 THR A 108 GLN A 129 1 22 HELIX 8 AA8 ILE A 138 LEU A 142 1 5 HELIX 9 AA9 SER A 144 GLY A 156 1 13 HELIX 10 AB1 PRO A 158 LYS A 160 5 3 HELIX 11 AB2 ASP A 161 LEU A 174 1 14 HELIX 12 AB3 LEU A 187 ASN A 209 1 23 HELIX 13 AB4 ASP A 213 SER A 221 1 9 HELIX 14 AB5 THR A 229 VAL A 245 1 17 HELIX 15 AB6 VAL A 245 ASP A 262 1 18 HELIX 16 AB7 LYS A 264 ASN A 273 1 10 HELIX 17 AB8 LEU A 276 ARG A 288 1 13 HELIX 18 AB9 TRP A 318 ASN A 323 1 6 HELIX 19 AC1 ASN A 341 HIS A 345 5 5 HELIX 20 AC2 ASN A 350 PHE A 354 5 5 HELIX 21 AC3 GLY A 357 PHE A 376 1 20 HELIX 22 AC4 LEU A 387 GLU A 389 5 3 HELIX 23 AC5 ALA B 6 ARG B 12 1 7 HELIX 24 AC6 THR B 15 SER B 21 1 7 HELIX 25 AC7 PRO B 22 ASP B 33 1 12 HELIX 26 AC8 LYS B 48 ASP B 58 1 11 HELIX 27 AC9 PRO B 83 GLN B 87 5 5 HELIX 28 AD1 PRO B 94 ALA B 105 1 12 HELIX 29 AD2 PRO B 109 GLN B 129 1 21 HELIX 30 AD3 ILE B 138 LEU B 142 1 5 HELIX 31 AD4 SER B 144 GLY B 156 1 13 HELIX 32 AD5 PRO B 158 LYS B 160 5 3 HELIX 33 AD6 ASP B 161 PHE B 173 1 13 HELIX 34 AD7 LYS B 186 ASN B 209 1 24 HELIX 35 AD8 ASP B 213 SER B 221 1 9 HELIX 36 AD9 THR B 229 GLY B 244 1 16 HELIX 37 AE1 VAL B 245 ASP B 262 1 18 HELIX 38 AE2 LYS B 264 ASN B 273 1 10 HELIX 39 AE3 LEU B 276 ARG B 288 1 13 HELIX 40 AE4 TRP B 318 ASN B 323 1 6 HELIX 41 AE5 ASN B 341 HIS B 345 5 5 HELIX 42 AE6 ASN B 350 PHE B 354 5 5 HELIX 43 AE7 GLY B 357 PHE B 376 1 20 HELIX 44 AE8 GLN B 386 GLU B 389 5 4 SHEET 1 AA1 5 VAL A 35 HIS A 38 0 SHEET 2 AA1 5 THR A 43 VAL A 46 -1 O THR A 43 N HIS A 38 SHEET 3 AA1 5 SER A 314 VAL A 317 1 O VAL A 316 N VAL A 46 SHEET 4 AA1 5 LEU A 294 VAL A 298 -1 N ARG A 296 O VAL A 315 SHEET 5 AA1 5 PHE A 62 SER A 63 -1 N SER A 63 O THR A 297 SHEET 1 AA2 3 ILE A 136 ASP A 137 0 SHEET 2 AA2 3 PRO A 404 SER A 408 -1 O LEU A 405 N ILE A 136 SHEET 3 AA2 3 HIS A 378 GLU A 380 -1 N HIS A 378 O SER A 408 SHEET 1 AA3 2 GLU A 222 VAL A 223 0 SHEET 2 AA3 2 GLU A 226 MET A 227 -1 O GLU A 226 N VAL A 223 SHEET 1 AA4 2 LEU A 391 THR A 392 0 SHEET 2 AA4 2 THR A 399 LEU A 400 -1 O THR A 399 N THR A 392 SHEET 1 AA5 5 VAL B 35 HIS B 38 0 SHEET 2 AA5 5 THR B 43 VAL B 46 -1 O THR B 43 N HIS B 38 SHEET 3 AA5 5 SER B 314 VAL B 317 1 O VAL B 316 N VAL B 46 SHEET 4 AA5 5 LEU B 294 VAL B 298 -1 N ARG B 296 O VAL B 315 SHEET 5 AA5 5 PHE B 62 SER B 63 -1 N SER B 63 O THR B 297 SHEET 1 AA6 3 ILE B 136 ASP B 137 0 SHEET 2 AA6 3 PRO B 404 SER B 408 -1 O LEU B 405 N ILE B 136 SHEET 3 AA6 3 HIS B 378 GLU B 380 -1 N HIS B 378 O SER B 408 SHEET 1 AA7 2 LEU B 391 SER B 394 0 SHEET 2 AA7 2 GLY B 397 LEU B 400 -1 O GLY B 397 N SER B 394 LINK SG CYS A 355 FE HEM A 501 1555 1555 2.22 LINK SG CYS B 355 FE HEM B 501 1555 1555 2.30 CISPEP 1 PRO A 93 PRO A 94 0 5.19 CISPEP 2 ASN A 290 LEU A 291 0 7.85 CISPEP 3 GLU B 79 GLY B 80 0 -2.11 CISPEP 4 PRO B 93 PRO B 94 0 4.00 CISPEP 5 PHE B 107 THR B 108 0 1.45 CISPEP 6 ASN B 290 LEU B 291 0 -2.92 SITE 1 AC1 20 ILE A 88 THR A 89 HIS A 96 ARG A 100 SITE 2 AC1 20 PHE A 107 ILE A 240 ALA A 243 GLY A 244 SITE 3 AC1 20 THR A 247 PHE A 289 LEU A 294 ARG A 296 SITE 4 AC1 20 MET A 319 THR A 347 PHE A 348 HIS A 353 SITE 5 AC1 20 CYS A 355 GLY A 357 ALA A 361 HOH A 615 SITE 1 AC2 23 ILE B 88 THR B 89 HIS B 96 ARG B 100 SITE 2 AC2 23 PHE B 107 ALA B 243 GLY B 244 THR B 247 SITE 3 AC2 23 THR B 248 PHE B 289 LEU B 294 ARG B 296 SITE 4 AC2 23 MET B 319 THR B 347 PHE B 348 GLY B 349 SITE 5 AC2 23 PRO B 352 HIS B 353 CYS B 355 GLY B 357 SITE 6 AC2 23 A9H B 502 HOH B 601 HOH B 608 SITE 1 AC3 4 ILE B 88 THR B 89 GLU B 90 HEM B 501 CRYST1 48.910 57.390 84.240 72.37 75.19 75.70 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020446 -0.005212 -0.004212 0.00000 SCALE2 0.000000 0.017982 -0.004762 0.00000 SCALE3 0.000000 0.000000 0.012702 0.00000