HEADER TRANSFERASE 03-MAR-16 5IKM TITLE 1.9 ANGSTROM CRYSTAL STRUCTURE OF NS5 METHYL TRANSFERASE FROM DENGUE TITLE 2 VIRUS 1 IN COMPLEX WITH S-ADENOSYLMETHIONINE AND BETA-D- TITLE 3 FRUCTOPYRANOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS5 METHYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11053; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS NS5 METHYL TRANSFERASE, DENGUE VIRUS 1, S-ADENOSYLMETHIONINE, BETA-D- KEYWDS 2 FRUCTOPYRANOSE, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 OF INFECTIOUS DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,J.WINSOR,I.DUBROVSKA,K.FLORES,S.SHATSMAN, AUTHOR 2 K.KWON,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 4 (CSGID) REVDAT 5 15-NOV-23 5IKM 1 REMARK REVDAT 4 27-SEP-23 5IKM 1 HETSYN REVDAT 3 29-JUL-20 5IKM 1 COMPND REMARK HETNAM SITE REVDAT 2 22-NOV-17 5IKM 1 REMARK REVDAT 1 16-MAR-16 5IKM 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,J.WINSOR,I.DUBROVSKA,K.FLORES, JRNL AUTH 2 S.SHATSMAN,K.KWON,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL TITL 1.9 ANGSTROM CRYSTAL STRUCTURE OF NS5 METHYL TRANSFERASE JRNL TITL 2 FROM DENGUE VIRUS 1 IN COMPLEX WITH S-ADENOSYLMETHIONINE AND JRNL TITL 3 BETA-D-FRUCTOPYRANOSE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : 3.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2371 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2236 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3223 ; 1.505 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5178 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 3.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;26.199 ;22.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;10.510 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.945 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2666 ; 0.023 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 547 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 0.640 ; 0.807 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 0.639 ; 0.807 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 1.108 ; 1.200 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1449 ; 1.107 ; 1.202 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1233 ; 1.278 ; 1.118 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1233 ; 1.275 ; 1.118 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1776 ; 2.052 ; 1.622 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2919 ; 7.079 ; 8.844 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2772 ; 6.683 ; 7.703 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0011 37.9346 7.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1492 REMARK 3 T33: 0.0059 T12: -0.0386 REMARK 3 T13: 0.0114 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.9626 L22: 2.2904 REMARK 3 L33: 3.0754 L12: -1.5727 REMARK 3 L13: 1.0420 L23: -0.0868 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: 0.3494 S13: -0.0935 REMARK 3 S21: -0.2931 S22: -0.1049 S23: 0.0094 REMARK 3 S31: 0.1339 S32: -0.1301 S33: -0.0449 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6835 23.8251 26.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0655 REMARK 3 T33: 0.0336 T12: 0.0054 REMARK 3 T13: 0.0372 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 5.0988 REMARK 3 L33: 0.9643 L12: 0.4032 REMARK 3 L13: 0.5021 L23: -0.2603 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.0558 S13: -0.0323 REMARK 3 S21: -0.3242 S22: -0.0364 S23: -0.2037 REMARK 3 S31: 0.1019 S32: 0.0405 S33: 0.0575 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7106 25.7108 36.0795 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.0686 REMARK 3 T33: 0.0324 T12: 0.0008 REMARK 3 T13: 0.0071 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.8093 L22: 2.4794 REMARK 3 L33: 1.9812 L12: -0.5463 REMARK 3 L13: 0.6048 L23: 0.0430 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.0090 S13: -0.0593 REMARK 3 S21: 0.0061 S22: 0.0425 S23: 0.0403 REMARK 3 S31: -0.0153 S32: -0.0059 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 128 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0709 37.9609 30.1972 REMARK 3 T TENSOR REMARK 3 T11: 0.1039 T22: 0.1049 REMARK 3 T33: 0.0713 T12: -0.0032 REMARK 3 T13: 0.0046 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.6414 L22: 0.8687 REMARK 3 L33: 0.9150 L12: -0.0128 REMARK 3 L13: 0.1133 L23: -0.5384 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.0591 S13: -0.0009 REMARK 3 S21: 0.0038 S22: 0.0168 S23: 0.0898 REMARK 3 S31: -0.0609 S32: -0.0212 S33: 0.0103 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8858 43.4340 20.4578 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1005 REMARK 3 T33: 0.0402 T12: -0.0109 REMARK 3 T13: 0.0004 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0147 L22: 0.9202 REMARK 3 L33: 1.8667 L12: -0.1353 REMARK 3 L13: -0.7195 L23: 0.6213 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: 0.0913 S13: 0.1032 REMARK 3 S21: -0.1184 S22: 0.0133 S23: 0.0123 REMARK 3 S31: -0.0363 S32: -0.0032 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5212 21.6766 35.9222 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0534 REMARK 3 T33: 0.0603 T12: -0.0026 REMARK 3 T13: -0.0089 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.5794 L22: 1.1142 REMARK 3 L33: 10.7061 L12: -0.4501 REMARK 3 L13: -1.9325 L23: -1.8906 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.0103 S13: 0.1082 REMARK 3 S21: 0.0297 S22: -0.0068 S23: -0.0787 REMARK 3 S31: -0.1664 S32: 0.2901 S33: 0.0358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : BERYLLIUM LENSES REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4V0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 6.8 MG/ML, 0.25M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS HCL (PH 8.3); SCREEN: JCSG+ (E2), 0.2M REMARK 280 SODIUM CHLORIDE, 0.1M SODIUM CACODYLATE (PH 6.5) 2M AMMONIUM REMARK 280 SULFATE; CRYO: 4M AMMONIUM SULFATE : 50% SUCROSE (1:1)., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.15350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.15350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.15350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.19000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.15350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 624 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 678 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 ALA A 265 REMARK 465 VAL A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 -50.66 67.98 REMARK 500 LYS A 52 -52.96 67.01 REMARK 500 ARG A 173 116.57 -169.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SCGID-IDP00274 RELATED DB: TARGETTRACK DBREF 5IKM A 1 266 UNP I6XG39 I6XG39_9FLAV 2494 2759 SEQADV 5IKM SER A -2 UNP I6XG39 EXPRESSION TAG SEQADV 5IKM ASN A -1 UNP I6XG39 EXPRESSION TAG SEQADV 5IKM ALA A 0 UNP I6XG39 EXPRESSION TAG SEQRES 1 A 269 SER ASN ALA GLY THR GLY ALA GLN GLY GLU THR LEU GLY SEQRES 2 A 269 GLU LYS TRP LYS ARG GLN LEU ASN GLN LEU SER LYS SER SEQRES 3 A 269 GLU PHE ASN THR TYR LYS ARG SER GLY ILE MET GLU VAL SEQRES 4 A 269 ASP ARG SER GLU ALA LYS GLU GLY LEU LYS ARG GLY GLU SEQRES 5 A 269 THR THR LYS HIS ALA VAL SER ARG GLY THR ALA LYS LEU SEQRES 6 A 269 ARG TRP PHE VAL GLU ARG ASN LEU VAL LYS PRO GLU GLY SEQRES 7 A 269 LYS VAL ILE ASP LEU GLY CYS GLY ARG GLY GLY TRP SER SEQRES 8 A 269 TYR TYR CYS ALA GLY LEU LYS LYS VAL THR GLU VAL LYS SEQRES 9 A 269 GLY TYR THR LYS GLY GLY PRO GLY HIS GLU GLU PRO ILE SEQRES 10 A 269 PRO MET ALA THR TYR GLY TRP ASN LEU VAL LYS LEU HIS SEQRES 11 A 269 SER GLY LYS ASP VAL PHE PHE ILE PRO PRO GLU LYS CYS SEQRES 12 A 269 ASP THR LEU LEU CYS ASP ILE GLY GLU SER SER PRO ASN SEQRES 13 A 269 PRO THR ILE GLU GLU GLY ARG THR LEU ARG VAL LEU LYS SEQRES 14 A 269 MET VAL GLU PRO TRP LEU ARG GLY ASN GLN PHE CYS ILE SEQRES 15 A 269 LYS ILE LEU ASN PRO TYR MET PRO SER VAL VAL GLU THR SEQRES 16 A 269 LEU GLU GLN MET GLN ARG LYS HIS GLY GLY MET LEU VAL SEQRES 17 A 269 ARG ASN PRO LEU SER ARG ASN SER THR HIS GLU MET TYR SEQRES 18 A 269 TRP VAL SER CSO GLY THR GLY ASN ILE VAL SER ALA VAL SEQRES 19 A 269 ASN MET THR SER ARG MET LEU LEU ASN ARG PHE THR MET SEQRES 20 A 269 ALA HIS ARG LYS PRO THR TYR GLU ARG ASP VAL ASP LEU SEQRES 21 A 269 GLY ALA GLY THR ARG HIS VAL ALA VAL MODRES 5IKM CSO A 222 CYS MODIFIED RESIDUE HET CSO A 222 7 HET CL A 301 1 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SAM A 311 27 HET BDF A 312 12 HET MLT A 313 9 HET GOL A 314 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM BDF BETA-D-FRUCTOPYRANOSE HETNAM MLT D-MALATE HETNAM GOL GLYCEROL HETSYN BDF BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 CL CL 1- FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 SAM C15 H22 N6 O5 S FORMUL 13 BDF C6 H12 O6 FORMUL 14 MLT C4 H6 O5 FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *282(H2 O) HELIX 1 AA1 THR A 8 GLN A 19 1 12 HELIX 2 AA2 SER A 21 SER A 31 1 11 HELIX 3 AA3 ARG A 38 ARG A 47 1 10 HELIX 4 AA4 ARG A 57 ARG A 68 1 12 HELIX 5 AA5 GLY A 85 ALA A 92 1 8 HELIX 6 AA6 GLY A 120 ASN A 122 5 3 HELIX 7 AA7 ASP A 131 ILE A 135 5 5 HELIX 8 AA8 ASN A 153 GLU A 169 1 17 HELIX 9 AA9 PRO A 170 LEU A 172 5 3 HELIX 10 AB1 MET A 186 GLY A 201 1 16 HELIX 11 AB2 ASN A 226 ARG A 241 1 16 HELIX 12 AB3 PHE A 242 MET A 244 5 3 SHEET 1 AA1 2 MET A 34 VAL A 36 0 SHEET 2 AA1 2 THR A 250 GLU A 252 1 O THR A 250 N GLU A 35 SHEET 1 AA2 7 VAL A 124 HIS A 127 0 SHEET 2 AA2 7 VAL A 97 TYR A 103 1 N GLY A 102 O LYS A 125 SHEET 3 AA2 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 AA2 7 THR A 142 CYS A 145 1 O LEU A 144 N LEU A 80 SHEET 5 AA2 7 GLN A 176 ILE A 181 1 O LYS A 180 N CYS A 145 SHEET 6 AA2 7 MET A 217 VAL A 220 -1 O MET A 217 N ILE A 181 SHEET 7 AA2 7 MET A 203 VAL A 205 -1 N VAL A 205 O TYR A 218 LINK C SER A 221 N CSO A 222 1555 1555 1.33 LINK C CSO A 222 N GLY A 223 1555 1555 1.32 CRYST1 58.380 86.230 144.307 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006930 0.00000