HEADER HYDROLASE 04-MAR-16 5ILB TITLE CRYSTAL STRUCTURE OF PROTEASE DOMAIN OF DEG2 LINKED WITH THE PDZ TITLE 2 DOMAIN OF DEG9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE DO-LIKE 2, CHLOROPLASTIC,PROTEASE DO-LIKE 9; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.-,3.4.21.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FUSION PROTEIN OF PROTEASE DOMAIN OF DEG2 (RESIDUES COMPND 7 110-315 OF O82261, DEGP2_ARATH) AND THE PDZ DOMAIN OF DEG9 (RESIDUES COMPND 8 326-592 OF Q9FL12 DEGP9_ARATH). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DEGP2, AT2G47940, F17A22.33, T9J23.7, DEGP9, AT5G40200, SOURCE 6 MSN9.10, MSN9.100; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DEG2, DEG9, FUSION PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OUYANG,L.LIU,X.Y.LI,S.ZHAO,L.X.ZHANG REVDAT 4 08-NOV-23 5ILB 1 REMARK REVDAT 3 20-DEC-17 5ILB 1 JRNL REVDAT 2 13-DEC-17 5ILB 1 JRNL REVDAT 1 08-MAR-17 5ILB 0 JRNL AUTH M.OUYANG,X.LI,S.ZHAO,H.PU,J.SHEN,Z.ADAM,T.CLAUSEN,L.ZHANG JRNL TITL THE CRYSTAL STRUCTURE OF DEG9 REVEALS A NOVEL OCTAMERIC-TYPE JRNL TITL 2 HTRA PROTEASE JRNL REF NAT PLANTS V. 3 973 2017 JRNL REFN ESSN 2055-0278 JRNL PMID 29180814 JRNL DOI 10.1038/S41477-017-0060-2 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 87664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5260 - 5.7368 0.94 2719 163 0.1672 0.2021 REMARK 3 2 5.7368 - 4.5610 1.00 2910 141 0.1533 0.1728 REMARK 3 3 4.5610 - 3.9867 1.00 2875 158 0.1457 0.1660 REMARK 3 4 3.9867 - 3.6232 1.00 2877 155 0.1653 0.1969 REMARK 3 5 3.6232 - 3.3640 1.00 2933 136 0.1691 0.2442 REMARK 3 6 3.3640 - 3.1660 1.00 2861 155 0.1887 0.2142 REMARK 3 7 3.1660 - 3.0077 1.00 2908 143 0.1904 0.2001 REMARK 3 8 3.0077 - 2.8769 1.00 2887 139 0.1939 0.2244 REMARK 3 9 2.8769 - 2.7663 1.00 2878 162 0.2030 0.2347 REMARK 3 10 2.7663 - 2.6709 1.00 2894 169 0.2114 0.2694 REMARK 3 11 2.6709 - 2.5875 1.00 2821 191 0.2130 0.2699 REMARK 3 12 2.5875 - 2.5136 1.00 2908 139 0.2112 0.2679 REMARK 3 13 2.5136 - 2.4475 1.00 2881 160 0.2082 0.2337 REMARK 3 14 2.4475 - 2.3878 1.00 2921 136 0.2092 0.2422 REMARK 3 15 2.3878 - 2.3335 1.00 2881 148 0.2020 0.2684 REMARK 3 16 2.3335 - 2.2839 1.00 2893 163 0.1995 0.2278 REMARK 3 17 2.2839 - 2.2382 1.00 2882 144 0.1983 0.2486 REMARK 3 18 2.2382 - 2.1960 1.00 2915 143 0.2027 0.2300 REMARK 3 19 2.1960 - 2.1568 1.00 2872 174 0.1965 0.2247 REMARK 3 20 2.1568 - 2.1203 1.00 2927 147 0.1985 0.2095 REMARK 3 21 2.1203 - 2.0861 1.00 2904 137 0.2119 0.2412 REMARK 3 22 2.0861 - 2.0540 1.00 2877 150 0.2032 0.2586 REMARK 3 23 2.0540 - 2.0238 1.00 2885 156 0.2134 0.2541 REMARK 3 24 2.0238 - 1.9953 1.00 2894 137 0.2067 0.2527 REMARK 3 25 1.9953 - 1.9684 1.00 2865 154 0.2294 0.2501 REMARK 3 26 1.9684 - 1.9428 0.99 2857 150 0.2261 0.2463 REMARK 3 27 1.9428 - 1.9185 0.93 2697 151 0.2479 0.2905 REMARK 3 28 1.9185 - 1.8954 0.82 2365 114 0.2595 0.3100 REMARK 3 29 1.8954 - 1.8734 0.64 1837 95 0.2530 0.2954 REMARK 3 30 1.8734 - 1.8523 0.50 1445 85 0.2543 0.3133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7375 REMARK 3 ANGLE : 0.922 10031 REMARK 3 CHIRALITY : 0.070 1157 REMARK 3 PLANARITY : 0.004 1294 REMARK 3 DIHEDRAL : 13.072 2721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.4541 -37.6679 36.7825 REMARK 3 T TENSOR REMARK 3 T11: -0.0902 T22: 0.0232 REMARK 3 T33: 0.0571 T12: -0.0875 REMARK 3 T13: 0.0262 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.3404 L22: 0.2158 REMARK 3 L33: 0.8661 L12: -0.1598 REMARK 3 L13: 0.2017 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.0303 S13: -0.0174 REMARK 3 S21: 0.0127 S22: 0.0310 S23: 0.1294 REMARK 3 S31: 0.0943 S32: -0.3767 S33: 0.0308 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ILB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.85 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IL9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM FORMATE, 0.2 M SODIUM REMARK 280 THIOCYANATE, 15% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.04650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.62641 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.31867 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.04650 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.62641 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.31867 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.04650 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.62641 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.31867 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.25282 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 170.63733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.25282 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 170.63733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.25282 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 170.63733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 106290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 53.04650 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -91.87923 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 106.09300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 724 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1040 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1083 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1109 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 694 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1044 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1046 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1082 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1113 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1114 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 109 REMARK 465 HIS A 110 REMARK 465 ASP A 111 REMARK 465 THR A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 ARG A 581 REMARK 465 ASN A 582 REMARK 465 GLY B 109 REMARK 465 HIS B 110 REMARK 465 ASP B 111 REMARK 465 ALA B 112 REMARK 465 SER B 113 REMARK 465 LYS B 577 REMARK 465 THR B 578 REMARK 465 GLU B 579 REMARK 465 GLU B 580 REMARK 465 ARG B 581 REMARK 465 ASN B 582 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 113 OG REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 212 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 312 CD OE1 OE2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 GLN A 361 CG CD OE1 NE2 REMARK 470 HIS A 387 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 458 O CG CD NE CZ NH1 NH2 REMARK 470 GLU A 466 CD OE1 OE2 REMARK 470 PHE A 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 GLU B 199 CG CD OE1 OE2 REMARK 470 HIS B 212 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 PHE B 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 475 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 214 NH2 ARG B 386 2.13 REMARK 500 O HOH B 883 O HOH B 929 2.14 REMARK 500 O HOH B 638 O HOH B 991 2.15 REMARK 500 O HOH B 812 O HOH B 1092 2.15 REMARK 500 O HOH A 627 O HOH A 694 2.18 REMARK 500 O HOH B 624 O HOH B 871 2.19 REMARK 500 O HOH B 957 O HOH B 971 2.19 REMARK 500 O HOH B 812 O HOH B 914 2.19 REMARK 500 O HOH A 799 O HOH A 1052 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 983 O HOH B 1045 9544 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 133 -5.93 -59.29 REMARK 500 GLN A 217 -6.44 82.32 REMARK 500 PHE A 284 -26.66 -145.46 REMARK 500 SER A 366 -2.47 75.00 REMARK 500 ARG A 386 -126.88 39.51 REMARK 500 ARG A 386 -128.85 42.71 REMARK 500 LYS A 437 138.37 -170.22 REMARK 500 GLN B 217 -3.58 75.95 REMARK 500 GLN B 217 -9.99 81.41 REMARK 500 PHE B 284 -24.97 -142.42 REMARK 500 PHE B 385 -85.82 -110.98 REMARK 500 LYS B 414 -13.46 68.78 REMARK 500 GLU B 464 34.03 -98.98 REMARK 500 ASN B 509 53.32 39.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1117 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B1124 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B1125 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B1126 DISTANCE = 7.14 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IL9 RELATED DB: PDB REMARK 900 RELATED ID: 5ILA RELATED DB: PDB DBREF 5ILB A 110 315 UNP O82261 DEGP2_ARATH 110 315 DBREF 5ILB A 316 582 UNP Q9FL12 DEGP9_ARATH 326 592 DBREF 5ILB B 110 315 UNP O82261 DEGP2_ARATH 110 315 DBREF 5ILB B 316 582 UNP Q9FL12 DEGP9_ARATH 326 592 SEQADV 5ILB GLY A 109 UNP O82261 EXPRESSION TAG SEQADV 5ILB GLY B 109 UNP O82261 EXPRESSION TAG SEQRES 1 A 474 GLY HIS ASP ALA SER PHE LEU ASN ALA VAL VAL LYS VAL SEQRES 2 A 474 TYR CYS THR HIS THR ALA PRO ASP TYR SER LEU PRO TRP SEQRES 3 A 474 GLN LYS GLN ARG GLN PHE THR SER THR GLY SER ALA PHE SEQRES 4 A 474 MET ILE GLY ASP GLY LYS LEU LEU THR ASN ALA HIS CYS SEQRES 5 A 474 VAL GLU HIS ASP THR GLN VAL LYS VAL LYS ARG ARG GLY SEQRES 6 A 474 ASP ASP ARG LYS TYR VAL ALA LYS VAL LEU VAL ARG GLY SEQRES 7 A 474 VAL ASP CYS ASP ILE ALA LEU LEU SER VAL GLU SER GLU SEQRES 8 A 474 ASP PHE TRP LYS GLY ALA GLU PRO LEU ARG LEU GLY HIS SEQRES 9 A 474 LEU PRO ARG LEU GLN ASP SER VAL THR VAL VAL GLY TYR SEQRES 10 A 474 PRO LEU GLY GLY ASP THR ILE SER VAL THR LYS GLY VAL SEQRES 11 A 474 VAL SER ARG ILE GLU VAL THR SER TYR ALA HIS GLY SER SEQRES 12 A 474 SER ASP LEU LEU GLY ILE GLN ILE ASP ALA ALA ILE ASN SEQRES 13 A 474 PRO GLY ASN SER GLY GLY PRO ALA PHE ASN ASP GLN GLY SEQRES 14 A 474 GLU CYS ILE GLY VAL ALA PHE GLN VAL TYR ARG SER GLU SEQRES 15 A 474 GLU THR GLU ASN ILE GLY TYR VAL ILE PRO THR THR VAL SEQRES 16 A 474 VAL SER HIS PHE LEU THR ASP TYR GLU ARG ASN GLY LYS SEQRES 17 A 474 TYR THR GLY PHE PRO VAL LEU GLY ILE GLU TRP GLN LYS SEQRES 18 A 474 MET GLU ASN PRO ASP LEU ARG LYS SER MET GLY MET GLU SEQRES 19 A 474 SER HIS GLN LYS GLY VAL ARG ILE ARG ARG ILE GLU PRO SEQRES 20 A 474 THR ALA PRO GLU SER GLN VAL LEU LYS PRO SER ASP ILE SEQRES 21 A 474 ILE LEU SER PHE ASP GLY VAL ASN ILE ALA ASN ASP GLY SEQRES 22 A 474 THR VAL PRO PHE ARG HIS GLY GLU ARG ILE GLY PHE SER SEQRES 23 A 474 TYR LEU ILE SER GLN LYS TYR THR GLY ASP SER ALA LEU SEQRES 24 A 474 VAL LYS VAL LEU ARG ASN LYS GLU ILE LEU GLU PHE ASN SEQRES 25 A 474 ILE LYS LEU ALA ILE HIS LYS ARG LEU ILE PRO ALA HIS SEQRES 26 A 474 ILE SER GLY LYS PRO PRO SER TYR PHE ILE VAL ALA GLY SEQRES 27 A 474 PHE VAL PHE THR THR VAL SER VAL PRO TYR LEU ARG SER SEQRES 28 A 474 GLU TYR GLY LYS GLU TYR GLU PHE ASP ALA PRO VAL LYS SEQRES 29 A 474 LEU LEU GLU LYS HIS LEU HIS ALA MET ALA GLN SER VAL SEQRES 30 A 474 ASP GLU GLN LEU VAL VAL VAL SER GLN VAL LEU VAL SER SEQRES 31 A 474 ASP ILE ASN ILE GLY TYR GLU GLU ILE VAL ASN THR GLN SEQRES 32 A 474 VAL VAL ALA PHE ASN GLY LYS PRO VAL LYS ASN LEU LYS SEQRES 33 A 474 GLY LEU ALA GLY MET VAL GLU ASN CYS GLU ASP GLU TYR SEQRES 34 A 474 MET LYS PHE ASN LEU ASP TYR ASP GLN ILE VAL VAL LEU SEQRES 35 A 474 ASP THR LYS THR ALA LYS GLU ALA THR LEU ASP ILE LEU SEQRES 36 A 474 THR THR HIS CYS ILE PRO SER ALA MET SER ASP ASP LEU SEQRES 37 A 474 LYS THR GLU GLU ARG ASN SEQRES 1 B 474 GLY HIS ASP ALA SER PHE LEU ASN ALA VAL VAL LYS VAL SEQRES 2 B 474 TYR CYS THR HIS THR ALA PRO ASP TYR SER LEU PRO TRP SEQRES 3 B 474 GLN LYS GLN ARG GLN PHE THR SER THR GLY SER ALA PHE SEQRES 4 B 474 MET ILE GLY ASP GLY LYS LEU LEU THR ASN ALA HIS CYS SEQRES 5 B 474 VAL GLU HIS ASP THR GLN VAL LYS VAL LYS ARG ARG GLY SEQRES 6 B 474 ASP ASP ARG LYS TYR VAL ALA LYS VAL LEU VAL ARG GLY SEQRES 7 B 474 VAL ASP CYS ASP ILE ALA LEU LEU SER VAL GLU SER GLU SEQRES 8 B 474 ASP PHE TRP LYS GLY ALA GLU PRO LEU ARG LEU GLY HIS SEQRES 9 B 474 LEU PRO ARG LEU GLN ASP SER VAL THR VAL VAL GLY TYR SEQRES 10 B 474 PRO LEU GLY GLY ASP THR ILE SER VAL THR LYS GLY VAL SEQRES 11 B 474 VAL SER ARG ILE GLU VAL THR SER TYR ALA HIS GLY SER SEQRES 12 B 474 SER ASP LEU LEU GLY ILE GLN ILE ASP ALA ALA ILE ASN SEQRES 13 B 474 PRO GLY ASN SER GLY GLY PRO ALA PHE ASN ASP GLN GLY SEQRES 14 B 474 GLU CYS ILE GLY VAL ALA PHE GLN VAL TYR ARG SER GLU SEQRES 15 B 474 GLU THR GLU ASN ILE GLY TYR VAL ILE PRO THR THR VAL SEQRES 16 B 474 VAL SER HIS PHE LEU THR ASP TYR GLU ARG ASN GLY LYS SEQRES 17 B 474 TYR THR GLY PHE PRO VAL LEU GLY ILE GLU TRP GLN LYS SEQRES 18 B 474 MET GLU ASN PRO ASP LEU ARG LYS SER MET GLY MET GLU SEQRES 19 B 474 SER HIS GLN LYS GLY VAL ARG ILE ARG ARG ILE GLU PRO SEQRES 20 B 474 THR ALA PRO GLU SER GLN VAL LEU LYS PRO SER ASP ILE SEQRES 21 B 474 ILE LEU SER PHE ASP GLY VAL ASN ILE ALA ASN ASP GLY SEQRES 22 B 474 THR VAL PRO PHE ARG HIS GLY GLU ARG ILE GLY PHE SER SEQRES 23 B 474 TYR LEU ILE SER GLN LYS TYR THR GLY ASP SER ALA LEU SEQRES 24 B 474 VAL LYS VAL LEU ARG ASN LYS GLU ILE LEU GLU PHE ASN SEQRES 25 B 474 ILE LYS LEU ALA ILE HIS LYS ARG LEU ILE PRO ALA HIS SEQRES 26 B 474 ILE SER GLY LYS PRO PRO SER TYR PHE ILE VAL ALA GLY SEQRES 27 B 474 PHE VAL PHE THR THR VAL SER VAL PRO TYR LEU ARG SER SEQRES 28 B 474 GLU TYR GLY LYS GLU TYR GLU PHE ASP ALA PRO VAL LYS SEQRES 29 B 474 LEU LEU GLU LYS HIS LEU HIS ALA MET ALA GLN SER VAL SEQRES 30 B 474 ASP GLU GLN LEU VAL VAL VAL SER GLN VAL LEU VAL SER SEQRES 31 B 474 ASP ILE ASN ILE GLY TYR GLU GLU ILE VAL ASN THR GLN SEQRES 32 B 474 VAL VAL ALA PHE ASN GLY LYS PRO VAL LYS ASN LEU LYS SEQRES 33 B 474 GLY LEU ALA GLY MET VAL GLU ASN CYS GLU ASP GLU TYR SEQRES 34 B 474 MET LYS PHE ASN LEU ASP TYR ASP GLN ILE VAL VAL LEU SEQRES 35 B 474 ASP THR LYS THR ALA LYS GLU ALA THR LEU ASP ILE LEU SEQRES 36 B 474 THR THR HIS CYS ILE PRO SER ALA MET SER ASP ASP LEU SEQRES 37 B 474 LYS THR GLU GLU ARG ASN FORMUL 3 HOH *1045(H2 O) HELIX 1 AA1 ALA A 112 ASN A 116 5 5 HELIX 2 AA2 ASN A 157 VAL A 161 5 5 HELIX 3 AA3 SER A 198 LYS A 203 1 6 HELIX 4 AA4 THR A 301 GLY A 315 1 15 HELIX 5 AA5 ASN A 332 MET A 339 1 8 HELIX 6 AA6 ALA A 357 VAL A 362 5 6 HELIX 7 AA7 PHE A 393 GLN A 399 1 7 HELIX 8 AA8 SER A 453 TYR A 461 1 9 HELIX 9 AA9 GLU A 464 ALA A 469 1 6 HELIX 10 AB1 PRO A 470 ALA A 480 1 11 HELIX 11 AB2 SER A 498 ILE A 502 5 5 HELIX 12 AB3 ASN A 522 ASN A 532 1 11 HELIX 13 AB4 THR A 552 ALA A 558 1 7 HELIX 14 AB5 ALA A 558 HIS A 566 1 9 HELIX 15 AB6 SER A 573 LYS A 577 5 5 HELIX 16 AB7 PHE B 114 ASN B 116 5 3 HELIX 17 AB8 ASN B 157 VAL B 161 5 5 HELIX 18 AB9 THR B 301 GLY B 315 1 15 HELIX 19 AC1 ASN B 332 MET B 339 1 8 HELIX 20 AC2 ALA B 357 GLN B 361 5 5 HELIX 21 AC3 PHE B 393 GLN B 399 1 7 HELIX 22 AC4 SER B 453 GLY B 462 1 10 HELIX 23 AC5 GLU B 464 ALA B 469 1 6 HELIX 24 AC6 PRO B 470 ALA B 480 1 11 HELIX 25 AC7 SER B 498 ILE B 502 5 5 HELIX 26 AC8 ASN B 522 ASN B 532 1 11 HELIX 27 AC9 THR B 552 ALA B 558 1 7 HELIX 28 AD1 ALA B 558 HIS B 566 1 9 SHEET 1 AA1 7 VAL A 118 HIS A 125 0 SHEET 2 AA1 7 PHE A 140 GLY A 150 -1 O PHE A 140 N HIS A 125 SHEET 3 AA1 7 LYS A 153 THR A 156 -1 O LEU A 155 N PHE A 147 SHEET 4 AA1 7 ILE A 191 VAL A 196 -1 O LEU A 194 N LEU A 154 SHEET 5 AA1 7 TYR A 178 GLY A 186 -1 N GLY A 186 O ILE A 191 SHEET 6 AA1 7 ASP A 164 LYS A 170 -1 N VAL A 167 O ALA A 180 SHEET 7 AA1 7 VAL A 118 HIS A 125 -1 N TYR A 122 O LYS A 168 SHEET 1 AA2 7 SER A 219 GLY A 224 0 SHEET 2 AA2 7 SER A 233 TYR A 247 -1 O GLY A 237 N VAL A 220 SHEET 3 AA2 7 SER A 252 ILE A 259 -1 O GLN A 258 N ARG A 241 SHEET 4 AA2 7 GLY A 296 PRO A 300 -1 O GLY A 296 N ILE A 259 SHEET 5 AA2 7 CYS A 279 VAL A 286 -1 N VAL A 282 O ILE A 299 SHEET 6 AA2 7 PRO A 271 PHE A 273 -1 N ALA A 272 O ILE A 280 SHEET 7 AA2 7 SER A 219 GLY A 224 -1 N THR A 221 O PHE A 273 SHEET 1 AA3 4 ILE A 325 GLN A 328 0 SHEET 2 AA3 4 VAL A 348 ILE A 353 -1 O ARG A 351 N GLU A 326 SHEET 3 AA3 4 ILE A 368 PHE A 372 -1 O ILE A 369 N VAL A 348 SHEET 4 AA3 4 VAL A 375 ASN A 376 -1 O VAL A 375 N PHE A 372 SHEET 1 AA4 5 ILE A 325 GLN A 328 0 SHEET 2 AA4 5 VAL A 348 ILE A 353 -1 O ARG A 351 N GLU A 326 SHEET 3 AA4 5 ILE A 368 PHE A 372 -1 O ILE A 369 N VAL A 348 SHEET 4 AA4 5 SER A 405 ARG A 412 -1 O LYS A 409 N LEU A 370 SHEET 5 AA4 5 GLU A 415 LYS A 422 -1 O PHE A 419 N VAL A 408 SHEET 1 AA5 2 THR A 382 PHE A 385 0 SHEET 2 AA5 2 GLU A 389 GLY A 392 -1 O ILE A 391 N VAL A 383 SHEET 1 AA6 5 TYR A 441 VAL A 444 0 SHEET 2 AA6 5 PHE A 447 THR A 451 -1 O PHE A 449 N PHE A 442 SHEET 3 AA6 5 VAL A 490 VAL A 495 -1 O SER A 493 N VAL A 448 SHEET 4 AA6 5 THR A 510 PHE A 515 -1 O VAL A 512 N VAL A 490 SHEET 5 AA6 5 LYS A 518 PRO A 519 -1 O LYS A 518 N PHE A 515 SHEET 1 AA7 6 TYR A 441 VAL A 444 0 SHEET 2 AA7 6 PHE A 447 THR A 451 -1 O PHE A 449 N PHE A 442 SHEET 3 AA7 6 VAL A 490 VAL A 495 -1 O SER A 493 N VAL A 448 SHEET 4 AA7 6 THR A 510 PHE A 515 -1 O VAL A 512 N VAL A 490 SHEET 5 AA7 6 TYR A 537 LEU A 542 -1 O ASN A 541 N VAL A 513 SHEET 6 AA7 6 GLN A 546 ASP A 551 -1 O VAL A 548 N PHE A 540 SHEET 1 AA8 7 VAL B 118 HIS B 125 0 SHEET 2 AA8 7 PHE B 140 GLY B 150 -1 O PHE B 140 N HIS B 125 SHEET 3 AA8 7 LYS B 153 THR B 156 -1 O LEU B 155 N PHE B 147 SHEET 4 AA8 7 ILE B 191 VAL B 196 -1 O LEU B 194 N LEU B 154 SHEET 5 AA8 7 TYR B 178 GLY B 186 -1 N GLY B 186 O ILE B 191 SHEET 6 AA8 7 ASP B 164 LYS B 170 -1 N VAL B 167 O ALA B 180 SHEET 7 AA8 7 VAL B 118 HIS B 125 -1 N THR B 124 O THR B 165 SHEET 1 AA9 7 SER B 219 GLY B 224 0 SHEET 2 AA9 7 SER B 233 TYR B 247 -1 O GLY B 237 N VAL B 220 SHEET 3 AA9 7 SER B 252 ILE B 259 -1 O GLN B 258 N ARG B 241 SHEET 4 AA9 7 GLY B 296 PRO B 300 -1 O GLY B 296 N ILE B 259 SHEET 5 AA9 7 CYS B 279 VAL B 286 -1 N GLN B 285 O TYR B 297 SHEET 6 AA9 7 PRO B 271 PHE B 273 -1 N ALA B 272 O ILE B 280 SHEET 7 AA9 7 SER B 219 GLY B 224 -1 N THR B 221 O PHE B 273 SHEET 1 AB1 4 ILE B 325 LYS B 329 0 SHEET 2 AB1 4 VAL B 348 ILE B 353 -1 O ARG B 351 N GLU B 326 SHEET 3 AB1 4 ILE B 368 PHE B 372 -1 O ILE B 369 N VAL B 348 SHEET 4 AB1 4 VAL B 375 ASN B 376 -1 O VAL B 375 N PHE B 372 SHEET 1 AB2 5 ILE B 325 LYS B 329 0 SHEET 2 AB2 5 VAL B 348 ILE B 353 -1 O ARG B 351 N GLU B 326 SHEET 3 AB2 5 ILE B 368 PHE B 372 -1 O ILE B 369 N VAL B 348 SHEET 4 AB2 5 SER B 405 ARG B 412 -1 O LYS B 409 N LEU B 370 SHEET 5 AB2 5 GLU B 415 LYS B 422 -1 O ILE B 421 N ALA B 406 SHEET 1 AB3 2 THR B 382 PRO B 384 0 SHEET 2 AB3 2 ARG B 390 GLY B 392 -1 O ILE B 391 N VAL B 383 SHEET 1 AB4 5 TYR B 441 VAL B 444 0 SHEET 2 AB4 5 PHE B 447 THR B 451 -1 O PHE B 449 N PHE B 442 SHEET 3 AB4 5 VAL B 490 VAL B 495 -1 O SER B 493 N VAL B 448 SHEET 4 AB4 5 THR B 510 PHE B 515 -1 O VAL B 512 N VAL B 490 SHEET 5 AB4 5 LYS B 518 PRO B 519 -1 O LYS B 518 N PHE B 515 SHEET 1 AB5 6 TYR B 441 VAL B 444 0 SHEET 2 AB5 6 PHE B 447 THR B 451 -1 O PHE B 449 N PHE B 442 SHEET 3 AB5 6 VAL B 490 VAL B 495 -1 O SER B 493 N VAL B 448 SHEET 4 AB5 6 THR B 510 PHE B 515 -1 O VAL B 512 N VAL B 490 SHEET 5 AB5 6 TYR B 537 LEU B 542 -1 O ASN B 541 N VAL B 513 SHEET 6 AB5 6 GLN B 546 ASP B 551 -1 O VAL B 548 N PHE B 540 CRYST1 106.093 106.093 255.956 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009426 0.005442 0.000000 0.00000 SCALE2 0.000000 0.010884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003907 0.00000