HEADER LYASE 05-MAR-16 5ILY TITLE TOBACCO 5-EPI-ARISTOLOCHENE SYNTHASE WITH BIS-TRIS BUFFER MOLECULE AND TITLE 2 DIPHOSPHATE (PPI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-EPI-ARISTOLOCHENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EAS; COMPND 5 EC: 4.2.3.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: EAS3, EAS4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PH9GW KEYWDS TERPENE SYNTHASE, TEAS, BIS-TRIS, DIPHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KOO,G.V.LOUIE,Y.XU,M.BOWMAN,J.P.NOEL REVDAT 2 27-SEP-23 5ILY 1 LINK REVDAT 1 08-MAR-17 5ILY 0 JRNL AUTH H.J.KOO,G.V.LOUIE,Y.XU,M.BOWMAN,J.P.NOEL JRNL TITL SMALL-MOLECULE BUFFER COMPONENTS CAN DIRECTLY AFFECT JRNL TITL 2 TERPENE-SYNTHASE ACTIVITY BY INTERACTING WITH THE JRNL TITL 3 SUBSTRATE-BINDING SITE OF THE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 35732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.2094 - 5.2766 0.87 3389 145 0.1311 0.1501 REMARK 3 2 5.2766 - 4.1888 0.90 3333 142 0.1367 0.1658 REMARK 3 3 4.1888 - 3.6595 0.93 3411 147 0.1564 0.1843 REMARK 3 4 3.6595 - 3.3250 0.95 3424 147 0.1964 0.2397 REMARK 3 5 3.3250 - 3.0867 0.95 3432 150 0.2278 0.2781 REMARK 3 6 3.0867 - 2.9047 0.96 3446 140 0.2400 0.3178 REMARK 3 7 2.9047 - 2.7593 0.96 3442 158 0.2548 0.3160 REMARK 3 8 2.7593 - 2.6392 0.97 3451 146 0.2779 0.3677 REMARK 3 9 2.6392 - 2.5376 0.97 3481 137 0.2956 0.3458 REMARK 3 10 2.5376 - 2.4500 0.97 3472 139 0.3362 0.3658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4490 REMARK 3 ANGLE : 1.161 6077 REMARK 3 CHIRALITY : 0.044 684 REMARK 3 PLANARITY : 0.005 768 REMARK 3 DIHEDRAL : 17.128 1655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0671 55.0222 21.4937 REMARK 3 T TENSOR REMARK 3 T11: 0.5876 T22: 0.3466 REMARK 3 T33: 0.8073 T12: -0.0758 REMARK 3 T13: 0.0507 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 3.7539 L22: 4.4366 REMARK 3 L33: 2.8256 L12: -1.4587 REMARK 3 L13: 0.5155 L23: -0.3767 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: -0.4698 S13: -0.5784 REMARK 3 S21: 0.2468 S22: 0.0240 S23: 0.7749 REMARK 3 S31: 0.1340 S32: -0.4082 S33: -0.0822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1040 59.1970 26.1201 REMARK 3 T TENSOR REMARK 3 T11: 0.5071 T22: 0.4273 REMARK 3 T33: 0.7025 T12: 0.1017 REMARK 3 T13: -0.1120 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 1.4589 L22: 9.3521 REMARK 3 L33: 9.2353 L12: 3.5704 REMARK 3 L13: -0.0174 L23: -2.3999 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.4339 S13: -0.3695 REMARK 3 S21: 0.9538 S22: 0.0212 S23: -0.6580 REMARK 3 S31: 0.0808 S32: 1.1337 S33: -0.0418 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7073 63.9694 9.4516 REMARK 3 T TENSOR REMARK 3 T11: 0.4156 T22: 0.4418 REMARK 3 T33: 0.7597 T12: -0.0689 REMARK 3 T13: 0.0552 T23: -0.1225 REMARK 3 L TENSOR REMARK 3 L11: 2.8973 L22: 2.2403 REMARK 3 L33: 7.7276 L12: -1.6923 REMARK 3 L13: -0.5990 L23: 2.1128 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.0875 S13: 0.1011 REMARK 3 S21: -0.0785 S22: 0.2544 S23: -0.6736 REMARK 3 S31: -0.3185 S32: 0.7129 S33: -0.1508 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6918 63.4368 18.7957 REMARK 3 T TENSOR REMARK 3 T11: 0.4637 T22: 0.3952 REMARK 3 T33: 0.8644 T12: -0.0439 REMARK 3 T13: 0.0842 T23: -0.1189 REMARK 3 L TENSOR REMARK 3 L11: 3.5049 L22: 3.6026 REMARK 3 L33: 2.5364 L12: -0.1697 REMARK 3 L13: -0.2919 L23: 0.8669 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0149 S13: -0.1933 REMARK 3 S21: 0.0257 S22: -0.1747 S23: 0.9048 REMARK 3 S31: -0.1382 S32: -0.3322 S33: 0.1924 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9938 87.0672 23.2468 REMARK 3 T TENSOR REMARK 3 T11: 0.7503 T22: 0.5969 REMARK 3 T33: 1.5426 T12: 0.0967 REMARK 3 T13: 0.0771 T23: -0.2259 REMARK 3 L TENSOR REMARK 3 L11: 2.8361 L22: 2.4954 REMARK 3 L33: 1.7027 L12: -0.6042 REMARK 3 L13: -0.4397 L23: 0.7581 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.2114 S13: 0.8272 REMARK 3 S21: 0.0069 S22: -0.0815 S23: 1.2240 REMARK 3 S31: -0.5644 S32: -0.5079 S33: 0.0127 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6652 84.0475 16.0286 REMARK 3 T TENSOR REMARK 3 T11: 0.5496 T22: 0.3785 REMARK 3 T33: 0.9523 T12: 0.0271 REMARK 3 T13: -0.0571 T23: -0.1611 REMARK 3 L TENSOR REMARK 3 L11: 3.8448 L22: 7.5822 REMARK 3 L33: 8.8048 L12: -0.4542 REMARK 3 L13: -1.1484 L23: -4.2073 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.2342 S13: 0.7548 REMARK 3 S21: -0.4219 S22: -0.0360 S23: 0.3406 REMARK 3 S31: -0.4905 S32: -0.5332 S33: 0.0809 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7450 71.3721 14.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.3582 REMARK 3 T33: 0.7794 T12: 0.0251 REMARK 3 T13: -0.0040 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 2.7833 L22: 3.5164 REMARK 3 L33: 3.1588 L12: 0.0302 REMARK 3 L13: -0.2251 L23: 0.2979 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.2255 S13: 0.2028 REMARK 3 S21: -0.2527 S22: 0.0488 S23: 0.2321 REMARK 3 S31: -0.1665 S32: -0.0313 S33: 0.0556 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ILY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 51.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.14590 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 3.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IM1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZION RESERIOR:100 MM MOPSO, REMARK 280 PH 7, 300 MM MG ACETATE, 13% PEG 8000,SOAKED IN 50 MM MOPSO (PH REMARK 280 7), 110 MM MG ACETATE, 10% PEG 8000, 10 MM BIS-TRIS (PH 6.5), 1 REMARK 280 MM INORGANIC DIPHOSPHATE (PPI), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.38000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.19000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 93.57000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.19000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.57000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.38000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 764 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 GLU A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 19 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 743 O HOH A 753 2.07 REMARK 500 NZ LYS A 200 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 16 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 14 -79.07 -80.68 REMARK 500 VAL A 17 97.43 54.84 REMARK 500 ASN A 98 81.26 52.15 REMARK 500 ASN A 100 79.92 -22.04 REMARK 500 ALA A 306 143.00 63.42 REMARK 500 TYR A 307 -0.80 69.78 REMARK 500 TRP A 323 74.88 52.46 REMARK 500 THR A 448 35.81 -87.25 REMARK 500 GLU A 452 63.11 64.90 REMARK 500 SER A 454 -1.30 -152.53 REMARK 500 ILE A 458 -2.56 -148.05 REMARK 500 GLU A 531 -70.30 -41.18 REMARK 500 VAL A 543 -71.10 -107.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 ASP A 301 OD2 52.2 REMARK 620 3 DPO A 605 O1 110.3 89.0 REMARK 620 4 DPO A 605 O5 68.4 111.8 82.3 REMARK 620 5 HOH A 714 O 160.7 145.9 71.0 93.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 301 OD1 REMARK 620 2 DPO A 605 O5 83.1 REMARK 620 3 HOH A 705 O 73.0 135.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 444 OD1 REMARK 620 2 THR A 448 OG1 87.9 REMARK 620 3 GLU A 452 OE2 161.1 89.0 REMARK 620 4 DPO A 605 O3 92.1 106.5 106.7 REMARK 620 5 DPO A 605 O7 83.2 167.0 96.4 83.4 REMARK 620 6 HOH A 721 O 82.5 81.4 78.5 170.4 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IK0 RELATED DB: PDB REMARK 900 RELATED ID: 5IK6 RELATED DB: PDB REMARK 900 RELATED ID: 5IK9 RELATED DB: PDB REMARK 900 RELATED ID: 5IKA RELATED DB: PDB REMARK 900 RELATED ID: 5IKH RELATED DB: PDB REMARK 900 RELATED ID: 5IL3 RELATED DB: PDB REMARK 900 RELATED ID: 5IL8 RELATED DB: PDB REMARK 900 RELATED ID: 5ILD RELATED DB: PDB REMARK 900 RELATED ID: 5ILH RELATED DB: PDB REMARK 900 RELATED ID: 5ILI RELATED DB: PDB REMARK 900 RELATED ID: 5ILJ RELATED DB: PDB REMARK 900 RELATED ID: 5ILK RELATED DB: PDB REMARK 900 RELATED ID: 5ILZ RELATED DB: PDB REMARK 900 RELATED ID: 5IM1 RELATED DB: PDB DBREF 5ILY A 1 548 UNP Q40577 5EAS_TOBAC 1 548 SEQADV 5ILY GLY A -1 UNP Q40577 EXPRESSION TAG SEQADV 5ILY SER A 0 UNP Q40577 EXPRESSION TAG SEQRES 1 A 550 GLY SER MET ALA SER ALA ALA VAL ALA ASN TYR GLU GLU SEQRES 2 A 550 GLU ILE VAL ARG PRO VAL ALA ASP PHE SER PRO SER LEU SEQRES 3 A 550 TRP GLY ASP GLN PHE LEU SER PHE SER ILE LYS ASN GLN SEQRES 4 A 550 VAL ALA GLU LYS TYR ALA LYS GLU ILE GLU ALA LEU LYS SEQRES 5 A 550 GLU GLN THR ARG ASN MET LEU LEU ALA THR GLY MET LYS SEQRES 6 A 550 LEU ALA ASP THR LEU ASN LEU ILE ASP THR ILE GLU ARG SEQRES 7 A 550 LEU GLY ILE SER TYR HIS PHE GLU LYS GLU ILE ASP ASP SEQRES 8 A 550 ILE LEU ASP GLN ILE TYR ASN GLN ASN SER ASN CYS ASN SEQRES 9 A 550 ASP LEU CYS THR SER ALA LEU GLN PHE ARG LEU LEU ARG SEQRES 10 A 550 GLN HIS GLY PHE ASN ILE SER PRO GLU ILE PHE SER LYS SEQRES 11 A 550 PHE GLN ASP GLU ASN GLY LYS PHE LYS GLU SER LEU ALA SEQRES 12 A 550 SER ASP VAL LEU GLY LEU LEU ASN LEU TYR GLU ALA SER SEQRES 13 A 550 HIS VAL ARG THR HIS ALA ASP ASP ILE LEU GLU ASP ALA SEQRES 14 A 550 LEU ALA PHE SER THR ILE HIS LEU GLU SER ALA ALA PRO SEQRES 15 A 550 HIS LEU LYS SER PRO LEU ARG GLU GLN VAL THR HIS ALA SEQRES 16 A 550 LEU GLU GLN CYS LEU HIS LYS GLY VAL PRO ARG VAL GLU SEQRES 17 A 550 THR ARG PHE PHE ILE SER SER ILE TYR ASP LYS GLU GLN SEQRES 18 A 550 SER LYS ASN ASN VAL LEU LEU ARG PHE ALA LYS LEU ASP SEQRES 19 A 550 PHE ASN LEU LEU GLN MET LEU HIS LYS GLN GLU LEU ALA SEQRES 20 A 550 GLN VAL SER ARG TRP TRP LYS ASP LEU ASP PHE VAL THR SEQRES 21 A 550 THR LEU PRO TYR ALA ARG ASP ARG VAL VAL GLU CYS TYR SEQRES 22 A 550 PHE TRP ALA LEU GLY VAL TYR PHE GLU PRO GLN TYR SER SEQRES 23 A 550 GLN ALA ARG VAL MET LEU VAL LYS THR ILE SER MET ILE SEQRES 24 A 550 SER ILE VAL ASP ASP THR PHE ASP ALA TYR GLY THR VAL SEQRES 25 A 550 LYS GLU LEU GLU ALA TYR THR ASP ALA ILE GLN ARG TRP SEQRES 26 A 550 ASP ILE ASN GLU ILE ASP ARG LEU PRO ASP TYR MET LYS SEQRES 27 A 550 ILE SER TYR LYS ALA ILE LEU ASP LEU TYR LYS ASP TYR SEQRES 28 A 550 GLU LYS GLU LEU SER SER ALA GLY ARG SER HIS ILE VAL SEQRES 29 A 550 CYS HIS ALA ILE GLU ARG MET LYS GLU VAL VAL ARG ASN SEQRES 30 A 550 TYR ASN VAL GLU SER THR TRP PHE ILE GLU GLY TYR THR SEQRES 31 A 550 PRO PRO VAL SER GLU TYR LEU SER ASN ALA LEU ALA THR SEQRES 32 A 550 THR THR TYR TYR TYR LEU ALA THR THR SER TYR LEU GLY SEQRES 33 A 550 MET LYS SER ALA THR GLU GLN ASP PHE GLU TRP LEU SER SEQRES 34 A 550 LYS ASN PRO LYS ILE LEU GLU ALA SER VAL ILE ILE CYS SEQRES 35 A 550 ARG VAL ILE ASP ASP THR ALA THR TYR GLU VAL GLU LYS SEQRES 36 A 550 SER ARG GLY GLN ILE ALA THR GLY ILE GLU CYS CYS MET SEQRES 37 A 550 ARG ASP TYR GLY ILE SER THR LYS GLU ALA MET ALA LYS SEQRES 38 A 550 PHE GLN ASN MET ALA GLU THR ALA TRP LYS ASP ILE ASN SEQRES 39 A 550 GLU GLY LEU LEU ARG PRO THR PRO VAL SER THR GLU PHE SEQRES 40 A 550 LEU THR PRO ILE LEU ASN LEU ALA ARG ILE VAL GLU VAL SEQRES 41 A 550 THR TYR ILE HIS ASN LEU ASP GLY TYR THR HIS PRO GLU SEQRES 42 A 550 LYS VAL LEU LYS PRO HIS ILE ILE ASN LEU LEU VAL ASP SEQRES 43 A 550 SER ILE LYS ILE HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET BTB A 604 14 HET DPO A 605 9 HETNAM MG MAGNESIUM ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM DPO DIPHOSPHATE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 MG 3(MG 2+) FORMUL 5 BTB C8 H19 N O5 FORMUL 6 DPO O7 P2 4- FORMUL 7 HOH *64(H2 O) HELIX 1 AA1 LYS A 35 LEU A 58 1 24 HELIX 2 AA2 LYS A 63 LEU A 77 1 15 HELIX 3 AA3 ILE A 79 HIS A 82 5 4 HELIX 4 AA4 PHE A 83 ASN A 98 1 16 HELIX 5 AA5 ASP A 103 HIS A 117 1 15 HELIX 6 AA6 SER A 122 GLN A 130 5 9 HELIX 7 AA7 LYS A 137 SER A 142 5 6 HELIX 8 AA8 ASP A 143 HIS A 155 1 13 HELIX 9 AA9 ASP A 161 GLU A 165 5 5 HELIX 10 AB1 ASP A 166 ALA A 179 1 14 HELIX 11 AB2 PRO A 180 LEU A 182 5 3 HELIX 12 AB3 PRO A 185 GLN A 196 1 12 HELIX 13 AB4 VAL A 202 ILE A 214 1 13 HELIX 14 AB5 TYR A 215 GLU A 218 5 4 HELIX 15 AB6 ASN A 222 ASP A 253 1 32 HELIX 16 AB7 ASP A 255 LEU A 260 1 6 HELIX 17 AB8 ARG A 266 TYR A 278 1 13 HELIX 18 AB9 GLU A 280 GLN A 282 5 3 HELIX 19 AC1 TYR A 283 ASP A 305 1 23 HELIX 20 AC2 THR A 309 TRP A 323 1 15 HELIX 21 AC3 ASP A 324 LEU A 331 5 8 HELIX 22 AC4 PRO A 332 LEU A 353 1 22 HELIX 23 AC5 GLY A 357 HIS A 360 5 4 HELIX 24 AC6 ILE A 361 GLY A 386 1 26 HELIX 25 AC7 PRO A 390 LEU A 399 1 10 HELIX 26 AC8 ALA A 400 THR A 402 5 3 HELIX 27 AC9 THR A 403 TYR A 412 1 10 HELIX 28 AD1 THR A 419 LYS A 428 1 10 HELIX 29 AD2 PRO A 430 THR A 448 1 19 HELIX 30 AD3 THR A 460 GLY A 470 1 11 HELIX 31 AD4 SER A 472 LEU A 495 1 24 HELIX 32 AD5 SER A 502 PHE A 505 5 4 HELIX 33 AD6 LEU A 506 TYR A 520 1 15 HELIX 34 AD7 ILE A 521 LEU A 524 5 4 HELIX 35 AD8 VAL A 533 VAL A 543 1 11 LINK OD1 ASP A 301 MG MG A 602 1555 1555 2.73 LINK OD2 ASP A 301 MG MG A 602 1555 1555 2.07 LINK OD1 ASP A 301 MG MG A 603 1555 1555 2.08 LINK OD1 ASP A 444 MG MG A 601 1555 1555 2.09 LINK OG1 THR A 448 MG MG A 601 1555 1555 2.08 LINK OE2 GLU A 452 MG MG A 601 1555 1555 2.08 LINK MG MG A 601 O3 DPO A 605 1555 1555 2.10 LINK MG MG A 601 O7 DPO A 605 1555 1555 2.09 LINK MG MG A 601 O HOH A 721 1555 1555 2.30 LINK MG MG A 602 O1 DPO A 605 1555 1555 2.10 LINK MG MG A 602 O5 DPO A 605 1555 1555 2.10 LINK MG MG A 602 O HOH A 714 1555 1555 2.35 LINK MG MG A 603 O5 DPO A 605 1555 1555 2.09 LINK MG MG A 603 O HOH A 705 1555 1555 2.07 CISPEP 1 VAL A 14 ARG A 15 0 -5.45 CISPEP 2 SER A 184 PRO A 185 0 4.43 CISPEP 3 TYR A 449 GLU A 450 0 5.66 CISPEP 4 VAL A 451 GLU A 452 0 -14.70 CISPEP 5 GLU A 452 LYS A 453 0 9.92 CISPEP 6 ARG A 497 PRO A 498 0 -6.89 SITE 1 AC1 5 ASP A 444 THR A 448 GLU A 452 DPO A 605 SITE 2 AC1 5 HOH A 721 SITE 1 AC2 5 ASP A 301 ASP A 305 MG A 603 DPO A 605 SITE 2 AC2 5 HOH A 714 SITE 1 AC3 4 ASP A 301 MG A 602 DPO A 605 HOH A 705 SITE 1 AC4 10 ARG A 264 TRP A 273 ILE A 294 SER A 298 SITE 2 AC4 10 THR A 402 THR A 403 ASP A 444 TYR A 520 SITE 3 AC4 10 TYR A 527 DPO A 605 SITE 1 AC5 13 ARG A 264 ASP A 301 THR A 401 ARG A 441 SITE 2 AC5 13 ASP A 444 THR A 448 GLU A 452 MG A 601 SITE 3 AC5 13 MG A 602 MG A 603 BTB A 604 HOH A 714 SITE 4 AC5 13 HOH A 721 CRYST1 126.740 126.740 124.760 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007890 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008015 0.00000