HEADER OXIDOREDUCTASE 06-MAR-16 5IMD TITLE XANTHOMONAS CAMPESTRIS PEROXIREDOXIN Q - STRUCTURE F4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOFERRITIN COMIGRATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS (STRAIN SOURCE 3 ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25); SOURCE 4 ORGANISM_TAXID: 190485; SOURCE 5 STRAIN: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25; SOURCE 6 GENE: XCC1738; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRXQ, BCP, PEROXIDASE, REDOX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PERKINS,D.PARSONAGE,K.J.NELSON,L.B.POOLE,A.KARPLUS REVDAT 4 27-SEP-23 5IMD 1 REMARK REVDAT 3 22-NOV-17 5IMD 1 JRNL REMARK REVDAT 2 19-OCT-16 5IMD 1 JRNL REVDAT 1 21-SEP-16 5IMD 0 JRNL AUTH A.PERKINS,D.PARSONAGE,K.J.NELSON,O.M.OGBA,P.H.CHEONG, JRNL AUTH 2 L.B.POOLE,P.A.KARPLUS JRNL TITL PEROXIREDOXIN CATALYSIS AT ATOMIC RESOLUTION. JRNL REF STRUCTURE V. 24 1668 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27594682 JRNL DOI 10.1016/J.STR.2016.07.012 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2386: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 46047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1559 - 3.5988 0.94 2840 147 0.1439 0.1652 REMARK 3 2 3.5988 - 2.8587 0.99 3045 128 0.1273 0.1391 REMARK 3 3 2.8587 - 2.4980 1.00 3005 182 0.1341 0.1494 REMARK 3 4 2.4980 - 2.2699 1.00 3054 144 0.1257 0.1642 REMARK 3 5 2.2699 - 2.1073 0.99 2991 151 0.1477 0.1668 REMARK 3 6 2.1073 - 1.9832 1.00 2984 181 0.1138 0.1340 REMARK 3 7 1.9832 - 1.8839 1.00 3040 161 0.1535 0.1779 REMARK 3 8 1.8839 - 1.8020 1.00 3029 166 0.1356 0.1619 REMARK 3 9 1.8020 - 1.7326 1.00 3044 137 0.1202 0.1495 REMARK 3 10 1.7326 - 1.6729 1.00 3004 171 0.1237 0.1550 REMARK 3 11 1.6729 - 1.6206 1.00 3036 157 0.1221 0.1939 REMARK 3 12 1.6206 - 1.5743 1.00 3070 154 0.1258 0.1533 REMARK 3 13 1.5743 - 1.5329 1.00 3059 135 0.1316 0.1355 REMARK 3 14 1.5329 - 1.4955 1.00 3025 151 0.1400 0.1954 REMARK 3 15 1.4955 - 1.4615 1.00 3035 145 0.1486 0.1815 REMARK 3 16 1.4615 - 1.4304 1.00 3023 146 0.1537 0.1990 REMARK 3 17 1.4304 - 1.4018 1.00 3051 143 0.1487 0.1738 REMARK 3 18 1.4018 - 1.3753 1.00 3052 133 0.1402 0.1879 REMARK 3 19 1.3753 - 1.3508 1.00 3105 151 0.1602 0.1766 REMARK 3 20 1.3508 - 1.3279 1.00 2983 130 0.1509 0.1544 REMARK 3 21 1.3279 - 1.3065 1.00 3044 162 0.1678 0.2638 REMARK 3 22 1.3065 - 1.2864 1.00 3033 148 0.1829 0.2719 REMARK 3 23 1.2864 - 1.2674 1.00 3034 148 0.2057 0.2390 REMARK 3 24 1.2674 - 1.2496 1.00 3033 172 0.2009 0.2170 REMARK 3 25 1.2496 - 1.2327 0.96 2897 124 0.1885 0.2049 REMARK 3 26 1.2327 - 1.2167 0.86 2617 134 0.1891 0.2449 REMARK 3 27 1.2167 - 1.2015 0.75 2288 100 0.1804 0.1988 REMARK 3 28 1.2015 - 1.1870 0.71 2178 113 0.1828 0.2013 REMARK 3 29 1.1870 - 1.1732 0.65 1969 84 0.1892 0.2361 REMARK 3 30 1.1732 - 1.1600 0.59 1748 95 0.1986 0.2559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1426 REMARK 3 ANGLE : 1.692 1956 REMARK 3 CHIRALITY : 0.105 215 REMARK 3 PLANARITY : 0.020 263 REMARK 3 DIHEDRAL : 22.379 530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 25.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GKM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.1 M SODIUM ACETATE PH REMARK 280 5.5, 10 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.75500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CSD A 48 O O A 204 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE21 GLN A 133 O HOH A 506 1556 1.48 REMARK 500 HE22 GLN A 133 O HOH A 506 1556 1.52 REMARK 500 NE2 GLN A 133 O HOH A 506 1556 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 2 C THR A 2 O -0.132 REMARK 500 ALA A 65 C ALA A 65 O -0.158 REMARK 500 GLU A 131 CG GLU A 131 CD 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE A 1 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ALA A 65 N - CA - C ANGL. DEV. = 26.0 DEGREES REMARK 500 ALA A 65 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 GLY A 66 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 123 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 GLU A 131 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU A 131 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 596 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 599 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A 600 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 602 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 603 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 604 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 605 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A 606 DISTANCE = 9.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 O REMARK 620 2 SER A 129 O 85.8 REMARK 620 3 HOH A 441 O 141.1 99.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 44 OG REMARK 620 2 HOH A 303 O 70.9 REMARK 620 3 HOH A 484 O 106.3 126.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IIZ RELATED DB: PDB REMARK 900 RELATED ID: 5IM9 RELATED DB: PDB REMARK 900 RELATED ID: 5IMA RELATED DB: PDB REMARK 900 RELATED ID: 5IMC RELATED DB: PDB REMARK 900 RELATED ID: 5IMF RELATED DB: PDB REMARK 900 RELATED ID: 5IMV RELATED DB: PDB REMARK 900 RELATED ID: 5IMZ RELATED DB: PDB DBREF 5IMD A 2 160 UNP Q8P9V9 Q8P9V9_XANCP 2 160 SEQADV 5IMD ACE A 1 UNP Q8P9V9 ACETYLATION SEQRES 1 A 160 ACE THR ASP ALA VAL LEU GLU LEU PRO ALA ALA THR PHE SEQRES 2 A 160 ASP LEU PRO LEU SER LEU SER GLY GLY THR GLN THR THR SEQRES 3 A 160 LEU ARG ALA HIS ALA GLY HIS TRP LEU VAL ILE TYR PHE SEQRES 4 A 160 TYR PRO LYS ASP SER THR PRO GLY CSD THR THR GLU GLY SEQRES 5 A 160 LEU ASP PHE ASN ALA LEU LEU PRO GLU PHE ASP LYS ALA SEQRES 6 A 160 GLY ALA LYS ILE LEU GLY VAL SER ARG ASP SER VAL LYS SEQRES 7 A 160 SER HIS ASP ASN PHE CYS ALA LYS GLN GLY PHE ALA PHE SEQRES 8 A 160 PRO LEU VAL SER ASP GLY ASP GLU ALA LEU CYS ARG ALA SEQRES 9 A 160 PHE ASP VAL ILE LYS GLU LYS ASN MET TYR GLY LYS GLN SEQRES 10 A 160 VAL LEU GLY ILE GLU ARG SER THR PHE LEU LEU SER PRO SEQRES 11 A 160 GLU GLY GLN VAL VAL GLN ALA TRP ARG LYS VAL LYS VAL SEQRES 12 A 160 ALA GLY HIS ALA ASP ALA VAL LEU ALA ALA LEU LYS ALA SEQRES 13 A 160 HIS ALA LYS GLN MODRES 5IMD CSD A 48 CYS MODIFIED RESIDUE HET ACE A 1 3 HET CSD A 48 8 HET NA A 201 1 HET NA A 202 1 HET FMT A 203 5 HET O A 204 1 HETNAM ACE ACETYL GROUP HETNAM CSD 3-SULFINOALANINE HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETNAM O OXYGEN ATOM HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 ACE C2 H4 O FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 NA 2(NA 1+) FORMUL 4 FMT C H2 O2 FORMUL 5 O O FORMUL 6 HOH *306(H2 O) HELIX 1 AA1 PRO A 9 LEU A 15 5 7 HELIX 2 AA2 LEU A 27 ALA A 31 5 5 HELIX 3 AA3 THR A 45 LEU A 58 1 14 HELIX 4 AA4 LEU A 58 ALA A 65 1 8 HELIX 5 AA5 SER A 76 GLY A 88 1 13 HELIX 6 AA6 GLU A 99 PHE A 105 1 7 HELIX 7 AA7 GLY A 145 LYS A 159 1 15 SHEET 1 AA1 2 LEU A 17 SER A 18 0 SHEET 2 AA1 2 GLN A 24 THR A 25 -1 O THR A 25 N LEU A 17 SHEET 1 AA2 5 LEU A 93 SER A 95 0 SHEET 2 AA2 5 LYS A 68 SER A 73 1 N GLY A 71 O VAL A 94 SHEET 3 AA2 5 LEU A 35 PHE A 39 1 N VAL A 36 O LYS A 68 SHEET 4 AA2 5 SER A 124 LEU A 128 -1 O SER A 124 N PHE A 39 SHEET 5 AA2 5 VAL A 134 ARG A 139 -1 O TRP A 138 N THR A 125 SHEET 1 AA3 2 ILE A 108 MET A 113 0 SHEET 2 AA3 2 LYS A 116 ILE A 121 -1 O VAL A 118 N LYS A 111 LINK C ACE A 1 N THR A 2 1555 1555 1.25 LINK C GLY A 47 N CSD A 48 1555 1555 1.35 LINK C CSD A 48 N THR A 49 1555 1555 1.32 LINK O HIS A 33 NA NA A 201 1555 1555 2.87 LINK OG SER A 44 NA NA A 202 1555 1555 3.02 LINK O SER A 129 NA NA A 201 1555 1555 2.89 LINK NA NA A 201 O HOH A 441 1555 1555 2.71 LINK NA NA A 202 O HOH A 303 1555 1555 3.17 LINK NA NA A 202 O HOH A 484 1555 2545 3.01 CISPEP 1 ALA A 65 GLY A 66 0 -28.11 SITE 1 AC1 5 HIS A 30 HIS A 33 LEU A 128 SER A 129 SITE 2 AC1 5 HOH A 441 SITE 1 AC2 3 SER A 44 PHE A 83 GLN A 87 SITE 1 AC3 5 ALA A 11 ASP A 14 LYS A 116 HOH A 328 SITE 2 AC3 5 HOH A 353 SITE 1 AC4 6 PRO A 41 LYS A 42 THR A 45 CSD A 48 SITE 2 AC4 6 ARG A 123 HOH A 301 CRYST1 35.660 51.510 40.060 90.00 104.03 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028043 0.000000 0.007007 0.00000 SCALE2 0.000000 0.019414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025730 0.00000 HETATM 1 C ACE A 1 17.178 5.426 24.808 1.00 27.31 C ANISOU 1 C ACE A 1 4439 3154 2783 201 -500 -666 C HETATM 2 O ACE A 1 16.066 5.137 24.702 1.00 26.12 O ANISOU 2 O ACE A 1 4251 3074 2598 103 -800 -795 O HETATM 3 CH3 ACE A 1 18.146 5.939 23.789 1.00 27.44 C ANISOU 3 CH3 ACE A 1 4417 3176 2833 204 -439 -687 C