HEADER CHAPERONE 07-MAR-16 5INA OBSLTE 16-AUG-17 5INA 5WNW TITLE CHAPERONE SPY BOUND TO IM7 6-45 ENSEMBLE CAVEAT 5INA THERE ARE SIGNIFICANT ATOMIC CLASHES IN THE STRUCTURE. CHAIN CAVEAT 2 5INA C DOES NOT SHOW CLEAR ELECTRON DENSITY. THERE ARE GAPS CAVEAT 3 5INA BETWEEN A MET 53 AND A ARG 55, BETWEEN B MET 53 AND B ARG CAVEAT 4 5INA 55, BETWEEN C TYR 10 AND C GLU 12, BETWEEN C GLU 14 AND C CAVEAT 5 5INA VAL 16, BETWEEN C LYS 43 AND C THR 45. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPHEROPLAST PROTEIN Y; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 52-147; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COLICIN-E7 IMMUNITY PROTEIN; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: UNP RESIDUES 6-45; COMPND 10 SYNONYM: IMME7,MICROCIN-E7 IMMUNITY PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: SPY, B1743, JW1732; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562 KEYWDS CHAPERONE EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN C AUTHOR S.HOROWITZ,L.SALMON,P.KOLDEWEY,L.S.AHLSTROM,R.MARTIN,Q.XU, AUTHOR 2 P.V.AFONINE,R.C.TRIEVEL,C.L.BROOKS,J.C.A.BARDWELL REVDAT 4 16-AUG-17 5INA 1 OBSLTE REMARK REVDAT 3 20-JUL-16 5INA 1 JRNL REVDAT 2 15-JUN-16 5INA 1 JRNL REVDAT 1 01-JUN-16 5INA 0 JRNL AUTH S.HOROWITZ,L.SALMON,P.KOLDEWEY,L.S.AHLSTROM,R.MARTIN,S.QUAN, JRNL AUTH 2 P.V.AFONINE,H.VAN DEN BEDEM,L.WANG,Q.XU,R.C.TRIEVEL, JRNL AUTH 3 C.L.BROOKS,J.C.BARDWELL JRNL TITL VISUALIZING CHAPERONE-ASSISTED PROTEIN FOLDING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 23 691 2016 JRNL REFN ESSN 1545-9985 JRNL PMID 27239796 JRNL DOI 10.1038/NSMB.3237 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 22584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4957 - 4.3091 0.88 1560 151 0.2510 0.2326 REMARK 3 2 4.3091 - 3.4224 0.97 1608 156 0.1732 0.1942 REMARK 3 3 3.4224 - 2.9904 0.96 1541 149 0.2003 0.2022 REMARK 3 4 2.9904 - 2.7172 0.96 1510 146 0.2136 0.2421 REMARK 3 5 2.7172 - 2.5226 0.96 1493 145 0.2198 0.2439 REMARK 3 6 2.5226 - 2.3740 0.94 1499 145 0.2039 0.2357 REMARK 3 7 2.3740 - 2.2551 0.97 1489 144 0.2086 0.2525 REMARK 3 8 2.2551 - 2.1570 0.96 1495 145 0.2259 0.2728 REMARK 3 9 2.1570 - 2.0740 0.94 1465 141 0.2488 0.2731 REMARK 3 10 2.0740 - 2.0024 0.94 1453 141 0.2611 0.2743 REMARK 3 11 2.0024 - 1.9398 0.91 1385 134 0.2676 0.3150 REMARK 3 12 1.9398 - 1.8844 0.91 1392 135 0.2837 0.3170 REMARK 3 13 1.8844 - 1.8348 0.88 1362 133 0.3014 0.2997 REMARK 3 14 1.8348 - 1.7901 0.89 1337 130 0.3430 0.4075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.153 1521 REMARK 3 ANGLE : 1.244 1980 REMARK 3 CHIRALITY : 0.055 214 REMARK 3 PLANARITY : 0.006 264 REMARK 3 DIHEDRAL : 21.192 596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN C HAS BEEN MODELED USING READ REMARK 3 (RESIDUAL ELECTRON AND ANOMALOUS DENSITY) METHOD, WHICH REMARK 3 CONSTITUES FIVE STEPS: (1) DETERMINING THE STRUCTURE OF THE REMARK 3 FOLDED DOMAIN OF THE RIGID SECTIONS OF PROTEIN, AND OBTAINING REMARK 3 HIGH QUALITY RESIDUAL ELECTRON DENSITY WITHIN THE DYNAMIC REMARK 3 REGIONS OF THE SUBSTRATE. (2) LABELING INDIVIDUAL RESIDUES IN REMARK 3 THE FLEXIBLE REGIONS OF THE SUBSTRATE WITH THE STRONG ANOMALOUS REMARK 3 SCATTERER IODINE, WHICH SERVES TO LOCATE THESE RESIDUES IN THREE- REMARK 3 DIMENSIONAL SPACE USING THEIR ANOMALOUS DENSITY. (3) PERFORMING REMARK 3 MOLECULAR DYNAMICS (MD) SIMULATIONS TO GENERATE A POOL OF REMARK 3 ENERGETICALLY REASONABLE CONFORMATIONS OF THE DYNAMIC COMPLEX REMARK 3 AND (4) APPLYING A SAMPLE-AND-SELECT ALGORITHM TO DETERMINE THE REMARK 3 MINIMAL SET OF SUBSTRATE CONFORMATIONS THAT FIT BOTH THE REMARK 3 RESIDUAL AND ANOMALOUS DENSITY. (5) FINALLY, VALIDATING THE REMARK 3 ENSEMBLE USING MULTIPLE STATISTICAL TESTS. REMARK 4 REMARK 4 5INA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28367 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41701 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, IMIDAZOLE, ZINC ACETATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.10000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.05000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.15000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.10000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 195.15000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 337 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 54 REMARK 465 THR A 124 REMARK 465 SER B 28 REMARK 465 ASP B 51 REMARK 465 GLN B 52 REMARK 465 LYS B 54 REMARK 465 PRO B 56 REMARK 465 THR C 11 REMARK 465 PHE C 15 REMARK 465 ILE C 44 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLY A 48 N C O REMARK 470 GLN A 49 N C O CB CG CD OE1 REMARK 470 GLN A 49 NE2 REMARK 470 ARG A 50 N C O CB CG CD NE REMARK 470 ARG A 50 CZ NH1 NH2 REMARK 470 ASP A 51 N C O CB CG OD1 OD2 REMARK 470 GLN A 52 N C O CB CG CD OE1 REMARK 470 GLN A 52 NE2 REMARK 470 MET A 53 N C O CB CG SD CE REMARK 470 ARG A 55 N C O CB CG CD NE REMARK 470 ARG A 55 CZ NH1 NH2 REMARK 470 PRO A 56 N C O CB CG CD REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLN A 88 CG CD OE1 NE2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 123 CG CD1 CD2 REMARK 470 PHE B 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 49 N C O CB CG CD OE1 REMARK 470 GLN B 49 NE2 REMARK 470 ARG B 50 N C O CB CG CD NE REMARK 470 ARG B 50 CZ NH1 NH2 REMARK 470 MET B 53 N C O CB CG SD CE REMARK 470 ARG B 55 N C O CB CG CD NE REMARK 470 ARG B 55 CZ NH1 NH2 REMARK 470 PRO B 57 N C O CB CG CD REMARK 470 LEU B 58 CG CD1 CD2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA PRO B 57 O HOH B 355 0.13 REMARK 500 CA PRO B 57 O HOH B 355 0.25 REMARK 500 CA PRO B 57 O HOH B 355 0.28 REMARK 500 CA PRO B 57 O HOH B 355 0.38 REMARK 500 CA PRO B 57 O HOH B 355 0.42 REMARK 500 HN3 IMD A 201 ZN ZN A 205 1.28 REMARK 500 HE ARG A 61 O HOH A 302 1.42 REMARK 500 HD21 ASN B 33 O HOH B 303 1.43 REMARK 500 HA ASP B 31 O HOH B 305 1.49 REMARK 500 HZ1 LYS A 121 O HOH A 307 1.49 REMARK 500 HZ1 LYS B 121 O HOH B 310 1.55 REMARK 500 O HOH B 341 O HOH B 360 1.81 REMARK 500 O HOH A 364 O HOH A 367 1.83 REMARK 500 O HOH A 303 O HOH A 354 1.83 REMARK 500 O HOH A 348 O HOH A 370 1.88 REMARK 500 O HOH A 355 O HOH A 364 1.89 REMARK 500 O HOH B 345 O HOH B 354 1.90 REMARK 500 O HOH A 354 O HOH A 369 1.93 REMARK 500 NZ LYS B 39 O HOH B 301 1.93 REMARK 500 O HOH B 326 O HOH B 359 1.95 REMARK 500 O LEU B 123 O HOH B 302 2.01 REMARK 500 OE1 GLN A 114 O HOH A 301 2.06 REMARK 500 NE ARG A 61 O HOH A 302 2.11 REMARK 500 SD MET A 46 O HOH A 382 2.13 REMARK 500 ND1 HIS A 96 O HOH A 303 2.13 REMARK 500 O HOH B 340 O HOH B 349 2.13 REMARK 500 O HOH A 303 O HOH A 348 2.16 REMARK 500 OE2 GLU A 60 O HOH A 304 2.17 REMARK 500 ND2 ASN B 33 O HOH B 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HN1 IMD A 207 ZN ZN A 209 1545 1.10 REMARK 500 HN1 IMD A 201 ZN ZN A 202 1545 1.47 REMARK 500 ZN ZN A 204 HN3 IMD A 208 8445 1.51 REMARK 500 O HOH A 347 O HOH B 310 5445 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 54.78 -91.80 REMARK 500 LYS A 121 53.53 -94.75 REMARK 500 LYS B 30 62.61 -29.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 384 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE1 REMARK 620 2 HOH A 363 O 102.0 REMARK 620 3 ASP A 36 OD2 97.1 132.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 GLU B 120 OE2 90.6 REMARK 620 3 IMD A 207 N1 87.3 113.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 ASP B 66 OD2 17.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD1 REMARK 620 2 ASP B 66 OD2 33.1 REMARK 620 3 IMD A 201 N1 30.7 5.4 REMARK 620 4 HOH B 308 O 78.1 45.0 47.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD2 REMARK 620 2 HOH A 353 O 99.7 REMARK 620 3 ASP A 71 OD2 46.9 57.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 86 OE1 REMARK 620 2 GLU B 79 OE1 73.5 REMARK 620 3 GLU B 79 OE2 68.7 8.4 REMARK 620 4 IMD A 208 N3 106.6 177.2 169.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 120 OE2 REMARK 620 2 HIS B 65 ND1 99.2 REMARK 620 3 IMD A 201 N3 95.7 117.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD2 REMARK 620 2 GLU A 59 OE1 49.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 96 NE2 REMARK 620 2 THR B 124 OXT 108.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 79 OE2 REMARK 620 2 IMD A 208 N3 75.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 DBREF 5INA A 29 124 UNP P77754 SPY_ECOLI 52 147 DBREF 5INA B 29 124 UNP P77754 SPY_ECOLI 52 147 DBREF 5INA C 6 45 UNP Q03708 IMM7_ECOLX 6 45 SEQADV 5INA SER A 28 UNP P77754 EXPRESSION TAG SEQADV 5INA SER B 28 UNP P77754 EXPRESSION TAG SEQRES 1 A 97 SER PHE LYS ASP LEU ASN LEU THR ASP ALA GLN LYS GLN SEQRES 2 A 97 GLN ILE ARG GLU ILE MET LYS GLY GLN ARG ASP GLN MET SEQRES 3 A 97 LYS ARG PRO PRO LEU GLU GLU ARG ARG ALA MET HIS ASP SEQRES 4 A 97 ILE ILE ALA SER ASP THR PHE ASP LYS VAL LYS ALA GLU SEQRES 5 A 97 ALA GLN ILE ALA LYS MET GLU GLU GLN ARG LYS ALA ASN SEQRES 6 A 97 MET LEU ALA HIS MET GLU THR GLN ASN LYS ILE TYR ASN SEQRES 7 A 97 ILE LEU THR PRO GLU GLN LYS LYS GLN PHE ASN ALA ASN SEQRES 8 A 97 PHE GLU LYS ARG LEU THR SEQRES 1 B 97 SER PHE LYS ASP LEU ASN LEU THR ASP ALA GLN LYS GLN SEQRES 2 B 97 GLN ILE ARG GLU ILE MET LYS GLY GLN ARG ASP GLN MET SEQRES 3 B 97 LYS ARG PRO PRO LEU GLU GLU ARG ARG ALA MET HIS ASP SEQRES 4 B 97 ILE ILE ALA SER ASP THR PHE ASP LYS VAL LYS ALA GLU SEQRES 5 B 97 ALA GLN ILE ALA LYS MET GLU GLU GLN ARG LYS ALA ASN SEQRES 6 B 97 MET LEU ALA HIS MET GLU THR GLN ASN LYS ILE TYR ASN SEQRES 7 B 97 ILE LEU THR PRO GLU GLN LYS LYS GLN PHE ASN ALA ASN SEQRES 8 B 97 PHE GLU LYS ARG LEU THR SEQRES 1 C 40 SER ILE SER ASP TYR THR GLU ALA GLU PHE VAL GLN LEU SEQRES 2 C 40 LEU LYS GLU ILE GLU LYS GLU ASN VAL ALA ALA THR ASP SEQRES 3 C 40 ASP VAL LEU ASP VAL LEU LEU GLU HIS PHE VAL LYS ILE SEQRES 4 C 40 THR HET IMD A 201 10 HET ZN A 202 2 HET ZN A 203 2 HET ZN A 204 2 HET ZN A 205 2 HET ZN A 206 1 HET IMD A 207 10 HET IMD A 208 10 HET ZN A 209 2 HET ZN B 201 2 HET ZN B 202 2 HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION FORMUL 4 IMD 3(C3 H5 N2 1+) FORMUL 5 ZN 8(ZN 2+) FORMUL 15 HOH *149(H2 O) HELIX 1 AA1 SER A 28 ASN A 33 5 6 HELIX 2 AA2 THR A 35 LYS A 47 1 13 HELIX 3 AA3 LEU A 58 ALA A 69 1 12 HELIX 4 AA4 ASP A 74 MET A 85 1 12 HELIX 5 AA5 MET A 85 ASN A 105 1 21 HELIX 6 AA6 THR A 108 LYS A 121 1 14 HELIX 7 AA7 THR B 35 LYS B 47 1 13 HELIX 8 AA8 GLU B 59 ALA B 69 1 11 HELIX 9 AA9 ASP B 74 ASN B 105 1 32 HELIX 10 AB1 THR B 108 ARG B 122 1 15 LINK OE1 GLU A 44 ZN A ZN A 206 1555 1555 2.29 LINK ND1 HIS A 65 ZN A ZN A 209 1555 1555 2.11 LINK OD1 ASP A 66 ZN A ZN A 202 1555 1555 2.58 LINK OD1 ASP A 66 ZN B ZN A 202 1555 1555 1.96 LINK OD2 ASP A 74 ZN A ZN A 203 1555 1555 2.08 LINK OE1 GLU A 86 ZN A ZN A 204 1555 1555 1.97 LINK OE2 GLU A 120 ZN A ZN A 205 1555 1555 1.77 LINK ND1 HIS B 65 ZN A ZN A 205 1555 1555 2.06 LINK OD2 ASP B 71 ZN A ZN B 202 1555 1555 1.93 LINK NE2 HIS B 96 ZN A ZN B 201 1555 1555 2.09 LINK OE2 GLU B 120 ZN A ZN A 209 1555 1555 1.86 LINK OXTATHR B 124 ZN A ZN B 201 1555 1555 2.22 LINK N3 IMD A 201 ZN A ZN A 205 1555 1555 1.98 LINK ZN A ZN A 203 O HOH A 353 1555 1555 2.15 LINK ZN B ZN A 203 O HOH A 378 1555 1555 1.98 LINK ZN A ZN A 206 O HOH A 363 1555 1555 2.31 LINK OD2 ASP A 36 ZN A ZN A 206 1555 5355 2.53 LINK OE1 GLU A 59 ZN A ZN B 202 1555 1565 2.10 LINK OD2 ASP A 71 ZN A ZN A 203 1555 8555 1.93 LINK OD2 ASP B 66 ZN A ZN A 202 1555 1545 2.55 LINK OD2 ASP B 66 ZN B ZN A 202 1555 1545 2.02 LINK OE1 GLU B 79 ZN A ZN A 204 1555 8445 2.50 LINK OE2 GLU B 79 ZN A ZN A 204 1555 8445 1.87 LINK OE2 GLU B 79 ZN B ZN A 204 1555 8445 2.65 LINK N1 IMD A 201 ZN B ZN A 202 1555 1545 2.43 LINK ZN B ZN A 202 O HOH B 308 1555 1565 1.86 LINK ZN A ZN A 204 N3 IMD A 208 1555 8445 2.13 LINK ZN B ZN A 204 N3 IMD A 208 1555 8445 2.68 LINK N1 IMD A 207 ZN A ZN A 209 1555 1545 1.75 SITE 1 AC1 9 HIS A 65 ASP A 66 GLU A 120 ZN A 202 SITE 2 AC1 9 ZN A 205 IMD A 207 ARG B 62 HIS B 65 SITE 3 AC1 9 ASP B 66 SITE 1 AC2 5 ASP A 66 IMD A 201 ARG B 62 ASP B 66 SITE 2 AC2 5 HOH B 308 SITE 1 AC3 4 ASP A 71 ASP A 74 HOH A 353 HOH A 378 SITE 1 AC4 3 GLU A 86 IMD A 208 GLU B 79 SITE 1 AC5 6 PHE A 119 GLU A 120 IMD A 201 ARG B 61 SITE 2 AC5 6 ARG B 62 HIS B 65 SITE 1 AC6 3 ASP A 36 GLU A 44 HOH A 363 SITE 1 AC7 7 ARG A 62 HIS A 65 IMD A 201 ZN A 209 SITE 2 AC7 7 HIS B 65 ASP B 66 GLU B 120 SITE 1 AC8 6 ALA A 83 GLU A 86 ZN A 204 HOH A 357 SITE 2 AC8 6 VAL B 76 GLU B 79 SITE 1 AC9 5 ARG A 61 HIS A 65 IMD A 207 GLU B 120 SITE 2 AC9 5 HOH B 344 SITE 1 AD1 6 ARG A 61 MET A 64 ILE A 68 HIS B 96 SITE 2 AD1 6 PHE B 119 THR B 124 SITE 1 AD2 3 GLU A 59 ASP B 71 HOH B 353 CRYST1 42.900 42.900 260.200 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003843 0.00000