HEADER IMMUNE SYSTEM 07-MAR-16 5IND TITLE CRYSTAL STRUCTURE OF HLA-B5801, A PROTECTIVE HLA ALLELE FOR HIV-1 TITLE 2 INFECTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-58 ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: BW-58,MHC CLASS I ANTIGEN B*58; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GLN-ALA-SER-GLN-ASP-VAL-LYS-ASN-TRP; COMPND 12 CHAIN: E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 18 ORGANISM_TAXID: 32644 KEYWDS HLA, HIV, QW9_E5D, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,J.-H.WANG REVDAT 4 23-OCT-24 5IND 1 REMARK REVDAT 3 27-SEP-23 5IND 1 REMARK REVDAT 2 19-OCT-16 5IND 1 JRNL REVDAT 1 05-OCT-16 5IND 0 JRNL AUTH X.LI,P.A.LAMOTHE,R.NG,S.XU,M.TENG,B.D.WALKER,J.H.WANG JRNL TITL CRYSTAL STRUCTURE OF HLA-B*5801, A PROTECTIVE HLA ALLELE FOR JRNL TITL 2 HIV-1 INFECTION. JRNL REF PROTEIN CELL V. 7 761 2016 JRNL REFN ESSN 1674-8018 JRNL PMID 27638468 JRNL DOI 10.1007/S13238-016-0309-Y REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 50296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3115 - 5.4796 0.99 3043 173 0.1868 0.2107 REMARK 3 2 5.4796 - 4.3506 1.00 2922 147 0.1492 0.1851 REMARK 3 3 4.3506 - 3.8010 1.00 2930 147 0.1571 0.2034 REMARK 3 4 3.8010 - 3.4536 1.00 2866 138 0.1741 0.2022 REMARK 3 5 3.4536 - 3.2061 1.00 2913 124 0.1925 0.2493 REMARK 3 6 3.2061 - 3.0171 1.00 2847 134 0.1973 0.2533 REMARK 3 7 3.0171 - 2.8661 1.00 2861 153 0.2077 0.2336 REMARK 3 8 2.8661 - 2.7413 1.00 2845 142 0.2030 0.2184 REMARK 3 9 2.7413 - 2.6358 1.00 2847 149 0.2028 0.2446 REMARK 3 10 2.6358 - 2.5449 1.00 2846 132 0.2048 0.2381 REMARK 3 11 2.5449 - 2.4653 1.00 2837 146 0.2027 0.2681 REMARK 3 12 2.4653 - 2.3948 1.00 2810 152 0.2025 0.2888 REMARK 3 13 2.3948 - 2.3318 1.00 2824 139 0.2154 0.2656 REMARK 3 14 2.3318 - 2.2749 1.00 2869 129 0.2166 0.3058 REMARK 3 15 2.2749 - 2.2232 1.00 2803 143 0.2200 0.2720 REMARK 3 16 2.2232 - 2.1759 1.00 2821 141 0.2257 0.2719 REMARK 3 17 2.1759 - 2.1324 0.71 2010 113 0.2188 0.3107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6516 REMARK 3 ANGLE : 1.070 8856 REMARK 3 CHIRALITY : 0.058 899 REMARK 3 PLANARITY : 0.007 1171 REMARK 3 DIHEDRAL : 16.618 3888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESSEQ 1:2 OR RESSEQ 4:6 OR REMARK 3 (RESID 7 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB OR NAME CG1 OR NAME REMARK 3 CG2)) OR RESSEQ 8:18 OR RESSEQ 20:47 OR REMARK 3 RESSEQ 49:88 OR RESSEQ 90:91 OR (RESID 92 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG1 OR NAME CG2)) OR REMARK 3 RESSEQ 93:99)) REMARK 3 SELECTION : (CHAIN D AND (RESSEQ 1:2 OR RESSEQ 4:6 OR REMARK 3 (RESID 7 AND (NAME N OR NAME CA OR NAME C REMARK 3 OR NAME O OR NAME CB OR NAME CG1 OR NAME REMARK 3 CG2)) OR RESSEQ 8:18 OR RESSEQ 20:47 OR REMARK 3 RESSEQ 49:88 OR RESSEQ 90:91 OR (RESID 92 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG1 OR NAME CG2)) OR REMARK 3 RESSEQ 93:98 OR (RESID 99 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME SD OR NAME CE )))) REMARK 3 ATOM PAIRS NUMBER : 882 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 1:74 OR RESSEQ 76:94 REMARK 3 OR (RESID 95 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG1 REMARK 3 OR NAME CG2)) OR RESSEQ 96:120 OR RESSEQ REMARK 3 122:141 OR (RESID 142 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG1 OR NAME CG2)) OR RESSEQ 143:169 OR REMARK 3 RESSEQ 171:175 OR RESSEQ 177:180 OR REMARK 3 RESSEQ 182:267 OR RESSEQ 269 OR RESSEQ REMARK 3 271:276)) REMARK 3 SELECTION : (CHAIN C AND (RESSEQ 1:74 OR RESSEQ 76:94 REMARK 3 OR (RESID 95 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME CG1 REMARK 3 OR NAME CG2)) OR RESSEQ 96:120 OR RESSEQ REMARK 3 122:141 OR (RESID 142 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB OR NAME REMARK 3 CG1 OR NAME CG2)) OR RESSEQ 143:169 OR REMARK 3 RESSEQ 171:175 OR RESSEQ 177:180 OR REMARK 3 RESSEQ 182:267 OR RESSEQ 269 OR RESSEQ REMARK 3 271:276)) REMARK 3 ATOM PAIRS NUMBER : 2518 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN F REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 70 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1A1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 15% PEG4K, 20% 2 REMARK 280 -PROPONAL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.70650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.70650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 154 O HOH D 162 1.84 REMARK 500 O HOH C 440 O HOH D 155 1.86 REMARK 500 O HOH C 335 O HOH C 446 1.89 REMARK 500 O GLY C 107 NH1 ARG C 169 1.91 REMARK 500 NH1 ARG A 169 O HOH A 301 1.97 REMARK 500 O HOH C 435 O HOH C 455 1.97 REMARK 500 N SER A 88 O HOH A 302 1.98 REMARK 500 NH1 ARG A 44 O HOH A 303 1.98 REMARK 500 O PRO A 276 O HOH A 304 2.02 REMARK 500 O HOH C 426 O HOH C 449 2.04 REMARK 500 O ASP A 227 O HOH A 305 2.08 REMARK 500 O HOH B 107 O HOH B 126 2.09 REMARK 500 O HOH A 405 O HOH A 409 2.09 REMARK 500 OE2 GLU A 275 O HOH A 306 2.10 REMARK 500 O LYS A 268 O HOH A 307 2.10 REMARK 500 OE1 GLU A 148 O HOH A 308 2.11 REMARK 500 O HOH B 133 O HOH B 135 2.12 REMARK 500 O ALA A 41 O HOH A 309 2.14 REMARK 500 OD2 ASP A 223 OG1 THR A 225 2.15 REMARK 500 O ASP C 106 NH1 ARG C 108 2.15 REMARK 500 OE1 GLU B 47 O HOH B 101 2.16 REMARK 500 O THR D 71 O HOH D 101 2.17 REMARK 500 O HOH A 356 O HOH A 363 2.17 REMARK 500 O HOH C 438 O HOH C 444 2.18 REMARK 500 OE1 GLU C 166 O HOH C 301 2.18 REMARK 500 O HOH A 409 O HOH A 424 2.18 REMARK 500 O HOH D 132 O HOH D 161 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 448 O HOH D 163 4554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 36 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU C 230 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -124.21 54.25 REMARK 500 SER A 42 77.91 57.98 REMARK 500 TRP B 60 -3.55 81.28 REMARK 500 ASP C 29 -123.57 54.21 REMARK 500 TRP D 60 -5.61 81.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5INC RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 IT REPRESENTS A NONSENSE MUTATION DBREF 5IND A 1 276 UNP P10319 1B58_HUMAN 25 300 DBREF 5IND B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5IND C 1 276 UNP P10319 1B58_HUMAN 25 300 DBREF 5IND D 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 5IND E 1 9 PDB 5IND 5IND 1 9 DBREF 5IND F 1 9 PDB 5IND 5IND 1 9 SEQADV 5IND ILE A 194 UNP P10319 VAL 218 SEE REMARK 999 SEQADV 5IND HIS A 277 UNP P10319 EXPRESSION TAG SEQADV 5IND ILE C 194 UNP P10319 VAL 218 SEE REMARK 999 SEQADV 5IND HIS C 277 UNP P10319 EXPRESSION TAG SEQRES 1 A 277 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 A 277 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 277 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 277 ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 277 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 A 277 ASN MET LYS ALA SER ALA GLN THR TYR ARG GLU ASN LEU SEQRES 7 A 277 ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 277 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 277 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER ALA SEQRES 10 A 277 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 277 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 277 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 A 277 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU ARG SEQRES 14 A 277 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 277 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 277 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 277 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 277 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 277 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 277 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 277 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 277 TRP GLU PRO HIS SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 277 GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SER SEQRES 2 C 277 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 C 277 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 277 ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP ILE SEQRES 5 C 277 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR ARG SEQRES 6 C 277 ASN MET LYS ALA SER ALA GLN THR TYR ARG GLU ASN LEU SEQRES 7 C 277 ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 C 277 SER HIS ILE ILE GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 C 277 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN SER ALA SEQRES 10 C 277 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 277 SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 C 277 GLN ARG LYS TRP GLU ALA ALA ARG VAL ALA GLU GLN LEU SEQRES 13 C 277 ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU ARG SEQRES 14 C 277 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 C 277 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 C 277 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 277 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 C 277 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 C 277 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 C 277 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 C 277 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 C 277 TRP GLU PRO HIS SEQRES 1 D 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 D 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 D 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 D 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 D 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 D 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 D 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 E 9 GLN ALA SER GLN ASP VAL LYS ASN TRP SEQRES 1 F 9 GLN ALA SER GLN ASP VAL LYS ASN TRP FORMUL 7 HOH *415(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 GLY A 56 ASN A 86 1 31 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 ALA C 49 GLU C 53 5 5 HELIX 9 AA9 GLY C 56 ASN C 86 1 31 HELIX 10 AB1 ASP C 137 ALA C 150 1 14 HELIX 11 AB2 ARG C 151 GLY C 162 1 12 HELIX 12 AB3 GLY C 162 GLY C 175 1 14 HELIX 13 AB4 GLY C 175 GLN C 180 1 6 HELIX 14 AB5 THR C 225 THR C 228 5 4 HELIX 15 AB6 GLU C 253 GLN C 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 GLY A 18 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 ARG A 14 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 LEU A 103 -1 O LEU A 103 N HIS A 3 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 126 N ASP A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O LEU A 206 N LYS A 186 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 ILE B 35 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 HIS B 84 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 GLU C 46 PRO C 47 0 SHEET 2 AA8 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 AA8 8 ARG C 21 VAL C 28 -1 N VAL C 28 O THR C 31 SHEET 4 AA8 8 HIS C 3 MET C 12 -1 N ARG C 6 O TYR C 27 SHEET 5 AA8 8 ILE C 94 LEU C 103 -1 O LEU C 103 N HIS C 3 SHEET 6 AA8 8 LEU C 109 TYR C 118 -1 O LEU C 110 N ASP C 102 SHEET 7 AA8 8 LYS C 121 LEU C 126 -1 O ILE C 124 N SER C 116 SHEET 8 AA8 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 AA9 4 LYS C 186 PRO C 193 0 SHEET 2 AA9 4 GLU C 198 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 AA9 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AA9 4 GLU C 229 LEU C 230 -1 N GLU C 229 O ALA C 246 SHEET 1 AB1 4 LYS C 186 PRO C 193 0 SHEET 2 AB1 4 GLU C 198 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 AB1 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AB1 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 AB2 4 GLU C 222 ASP C 223 0 SHEET 2 AB2 4 THR C 214 ARG C 219 -1 N ARG C 219 O GLU C 222 SHEET 3 AB2 4 TYR C 257 GLN C 262 -1 O HIS C 260 N THR C 216 SHEET 4 AB2 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 AB3 4 LYS D 6 SER D 11 0 SHEET 2 AB3 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 AB3 4 PHE D 62 PHE D 70 -1 O TYR D 66 N CYS D 25 SHEET 4 AB3 4 GLU D 50 HIS D 51 -1 N GLU D 50 O TYR D 67 SHEET 1 AB4 4 LYS D 6 SER D 11 0 SHEET 2 AB4 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 AB4 4 PHE D 62 PHE D 70 -1 O TYR D 66 N CYS D 25 SHEET 4 AB4 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 AB5 4 GLU D 44 ARG D 45 0 SHEET 2 AB5 4 ILE D 35 LYS D 41 -1 N LYS D 41 O GLU D 44 SHEET 3 AB5 4 TYR D 78 HIS D 84 -1 O ALA D 79 N LEU D 40 SHEET 4 AB5 4 LYS D 91 LYS D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.09 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.01 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.07 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.01 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.02 CISPEP 1 TYR A 209 PRO A 210 0 3.97 CISPEP 2 HIS B 31 PRO B 32 0 -0.08 CISPEP 3 TYR C 209 PRO C 210 0 2.84 CISPEP 4 HIS D 31 PRO D 32 0 0.91 CRYST1 69.413 82.280 157.720 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006340 0.00000