HEADER HYDROLASE/DNA 07-MAR-16 5INK TITLE MOUSE TDP2 REACTION PRODUCT (5'-PHOSPHORYLATED DNA)-ABASIC/THF-MG2+ TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-DNA PHOSPHODIESTERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 118-370; COMPND 5 SYNONYM: TYR-DNA PHOSPHODIESTERASE 2,5'-TYROSYL-DNA COMPND 6 PHOSPHODIESTERASE,5'-TYR-DNA PHOSPHODIESTERASE,TRAF AND TNF RECEPTOR- COMPND 7 ASSOCIATED PROTEIN; COMPND 8 EC: 3.1.4.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA (5'-D(P*(3DR)P*CP*GP*AP*AP*TP*TP*CP*G)-3'); COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TDP2, TTRAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG9; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, DNA REPAIR, ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE (EEP) KEYWDS 2 DOMAIN, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.SCHELLENBERG,R.S.WILLIAMS REVDAT 5 27-SEP-23 5INK 1 LINK REVDAT 4 18-DEC-19 5INK 1 REMARK REVDAT 3 20-SEP-17 5INK 1 JRNL REMARK REVDAT 2 18-MAY-16 5INK 1 JRNL REVDAT 1 27-APR-16 5INK 0 JRNL AUTH M.J.SCHELLENBERG,L.PERERA,C.N.STROM,C.A.WATERS,B.MONIAN, JRNL AUTH 2 C.D.APPEL,C.K.VILAS,J.G.WILLIAMS,D.A.RAMSDEN,R.S.WILLIAMS JRNL TITL REVERSAL OF DNA DAMAGE INDUCED TOPOISOMERASE 2 DNA-PROTEIN JRNL TITL 2 CROSSLINKS BY TDP2. JRNL REF NUCLEIC ACIDS RES. V. 44 3829 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27060144 JRNL DOI 10.1093/NAR/GKW228 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 34369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5INK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000217734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34435 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4GZ1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, 200MM NAOAC, 20 MM MAGNESIUM REMARK 280 FORMATE, 100 MM HEPES, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.30750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.37250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.83100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.37250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.30750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.83100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 115 REMARK 465 LYS A 116 REMARK 465 SER B 115 REMARK 465 LYS B 116 REMARK 465 GLY B 117 REMARK 465 LEU B 118 REMARK 465 GLU B 119 REMARK 465 ASP B 120 REMARK 465 SER B 121 REMARK 465 SER B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 19.56 58.91 REMARK 500 THR A 240 150.62 80.87 REMARK 500 HIS A 243 31.83 -97.49 REMARK 500 ASN A 274 18.93 52.12 REMARK 500 TRP B 129 118.14 -163.60 REMARK 500 ALA B 175 41.23 -109.48 REMARK 500 GLU B 238 126.78 -32.46 REMARK 500 THR B 240 151.82 75.29 REMARK 500 ASN B 274 17.04 53.02 REMARK 500 GLU B 334 115.53 -37.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE B 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 162 OE2 REMARK 620 2 HOH A 519 O 85.1 REMARK 620 3 HOH A 534 O 175.1 91.9 REMARK 620 4 HOH A 538 O 89.8 93.0 86.6 REMARK 620 5 3DR D 1 OP1 90.4 92.8 93.5 174.2 REMARK 620 6 HOH D 109 O 92.8 177.1 90.2 85.1 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 162 OE2 REMARK 620 2 HOH B 523 O 93.3 REMARK 620 3 HOH B 528 O 85.5 89.9 REMARK 620 4 HOH B 531 O 174.1 82.7 90.1 REMARK 620 5 3DR C 1 OP2 93.4 173.2 91.9 90.8 REMARK 620 6 HOH C 107 O 95.7 87.9 177.5 88.5 90.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 3DR C 1 and DC C REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 3DR D 1 and DC D REMARK 800 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GZ1 RELATED DB: PDB REMARK 900 4GZ1 CONTAINS THE SAME MOLECULE COMPLEXED WITH A DIFFERENT DNA REMARK 900 RELATED ID: 5INQ RELATED DB: PDB REMARK 900 RELATED ID: 5INN RELATED DB: PDB REMARK 900 RELATED ID: 5INM RELATED DB: PDB REMARK 900 RELATED ID: 5INL RELATED DB: PDB REMARK 900 RELATED ID: 5INP RELATED DB: PDB DBREF 5INK A 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 DBREF 5INK B 118 370 UNP Q9JJX7 TYDP2_MOUSE 118 370 DBREF 5INK C 1 9 PDB 5INK 5INK 1 9 DBREF 5INK D 1 9 PDB 5INK 5INK 1 9 SEQADV 5INK SER A 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 5INK LYS A 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 5INK GLY A 117 UNP Q9JJX7 EXPRESSION TAG SEQADV 5INK SER B 115 UNP Q9JJX7 EXPRESSION TAG SEQADV 5INK LYS B 116 UNP Q9JJX7 EXPRESSION TAG SEQADV 5INK GLY B 117 UNP Q9JJX7 EXPRESSION TAG SEQRES 1 A 256 SER LYS GLY LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 A 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 A 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 A 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 A 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 A 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 A 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 A 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 A 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 A 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLU HIS SER SEQRES 11 A 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 A 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 A 256 GLY ASP THR ASN LEU ARG ASP GLN GLU VAL ILE LYS CYS SEQRES 14 A 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 A 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 A 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA TYR LYS SEQRES 17 A 256 HIS ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 A 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 A 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 A 256 LEU LEU CYS THR LEU ASN VAL VAL LEU SEQRES 1 B 256 SER LYS GLY LEU GLU ASP SER SER THR ILE SER PHE ILE SEQRES 2 B 256 THR TRP ASN ILE ASP GLY LEU ASP GLY CYS ASN LEU PRO SEQRES 3 B 256 GLU ARG ALA ARG GLY VAL CYS SER CYS LEU ALA LEU TYR SEQRES 4 B 256 SER PRO ASP VAL VAL PHE LEU GLN GLU VAL ILE PRO PRO SEQRES 5 B 256 TYR CYS ALA TYR LEU LYS LYS ARG ALA ALA SER TYR THR SEQRES 6 B 256 ILE ILE THR GLY ASN GLU GLU GLY TYR PHE THR ALA ILE SEQRES 7 B 256 LEU LEU LYS LYS GLY ARG VAL LYS PHE LYS SER GLN GLU SEQRES 8 B 256 ILE ILE PRO PHE PRO ASN THR LYS MET MET ARG ASN LEU SEQRES 9 B 256 LEU CYS VAL ASN VAL SER LEU GLY GLY ASN GLU PHE CYS SEQRES 10 B 256 LEU MET THR SER HIS LEU GLU SER THR ARG GLU HIS SER SEQRES 11 B 256 ALA GLU ARG ILE ARG GLN LEU LYS THR VAL LEU GLY LYS SEQRES 12 B 256 MET GLN GLU ALA PRO ASP SER THR THR VAL ILE PHE ALA SEQRES 13 B 256 GLY ASP THR ASN LEU ARG ASP GLN GLU VAL ILE LYS CYS SEQRES 14 B 256 GLY GLY LEU PRO ASP ASN VAL PHE ASP ALA TRP GLU PHE SEQRES 15 B 256 LEU GLY LYS PRO LYS HIS CYS GLN TYR THR TRP ASP THR SEQRES 16 B 256 LYS ALA ASN ASN ASN LEU ARG ILE PRO ALA ALA TYR LYS SEQRES 17 B 256 HIS ARG PHE ASP ARG ILE PHE PHE ARG ALA GLU GLU GLY SEQRES 18 B 256 HIS LEU ILE PRO GLN SER LEU ASP LEU VAL GLY LEU GLU SEQRES 19 B 256 LYS LEU ASP CYS GLY ARG PHE PRO SER ASP HIS TRP GLY SEQRES 20 B 256 LEU LEU CYS THR LEU ASN VAL VAL LEU SEQRES 1 C 9 3DR DC DG DA DA DT DT DC DG SEQRES 1 D 9 3DR DC DG DA DA DT DT DC DG HET 3DR C 1 12 HET 3DR D 1 12 HET GOL A 401 6 HET MG A 402 1 HET MG B 401 1 HET EPE B 402 7 HET PEG B 403 7 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 3DR ABASIC DIDEOXYRIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 3 3DR 2(C5 H11 O6 P) FORMUL 5 GOL C3 H8 O3 FORMUL 6 MG 2(MG 2+) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *441(H2 O) HELIX 1 AA1 LEU A 118 SER A 121 5 4 HELIX 2 AA2 ASN A 138 SER A 154 1 17 HELIX 3 AA3 ILE A 164 ALA A 175 1 12 HELIX 4 AA4 THR A 240 GLU A 242 5 3 HELIX 5 AA5 HIS A 243 ALA A 261 1 19 HELIX 6 AA6 ARG A 276 GLY A 284 1 9 HELIX 7 AA7 ALA A 293 LEU A 297 1 5 HELIX 8 AA8 PRO A 300 GLN A 304 5 5 HELIX 9 AA9 ASN B 138 SER B 154 1 17 HELIX 10 AB1 ILE B 164 ALA B 175 1 12 HELIX 11 AB2 THR B 240 GLU B 242 5 3 HELIX 12 AB3 HIS B 243 ALA B 261 1 19 HELIX 13 AB4 ARG B 276 CYS B 283 1 8 HELIX 14 AB5 ALA B 293 LEU B 297 1 5 SHEET 1 AA1 6 TYR A 178 THR A 182 0 SHEET 2 AA1 6 PHE A 189 LYS A 195 -1 O ILE A 192 N ILE A 181 SHEET 3 AA1 6 VAL A 157 VAL A 163 -1 N VAL A 158 O LEU A 193 SHEET 4 AA1 6 THR A 123 ASN A 130 1 N ILE A 127 O PHE A 159 SHEET 5 AA1 6 GLY A 361 VAL A 368 -1 O LEU A 366 N ILE A 124 SHEET 6 AA1 6 LEU A 337 VAL A 345 -1 N GLN A 340 O THR A 365 SHEET 1 AA2 6 LYS A 200 PRO A 208 0 SHEET 2 AA2 6 ASN A 217 LEU A 225 -1 O CYS A 220 N GLU A 205 SHEET 3 AA2 6 ASN A 228 SER A 235 -1 O LEU A 232 N VAL A 221 SHEET 4 AA2 6 THR A 266 ASP A 272 1 O ILE A 268 N MET A 233 SHEET 5 AA2 6 ASP A 326 ARG A 331 -1 O PHE A 329 N PHE A 269 SHEET 6 AA2 6 VAL A 290 ASP A 292 -1 N PHE A 291 O PHE A 330 SHEET 1 AA3 2 TRP A 307 ASP A 308 0 SHEET 2 AA3 2 LYS A 322 HIS A 323 -1 O HIS A 323 N TRP A 307 SHEET 1 AA4 6 TYR B 178 THR B 182 0 SHEET 2 AA4 6 PHE B 189 LYS B 195 -1 O LEU B 194 N THR B 179 SHEET 3 AA4 6 VAL B 157 VAL B 163 -1 N VAL B 158 O LEU B 193 SHEET 4 AA4 6 ILE B 124 ASN B 130 1 N ILE B 127 O PHE B 159 SHEET 5 AA4 6 GLY B 361 VAL B 368 -1 O LEU B 366 N ILE B 124 SHEET 6 AA4 6 LEU B 337 VAL B 345 -1 N ASP B 343 O LEU B 363 SHEET 1 AA5 6 LYS B 200 PRO B 208 0 SHEET 2 AA5 6 ASN B 217 LEU B 225 -1 O CYS B 220 N GLU B 205 SHEET 3 AA5 6 ASN B 228 SER B 235 -1 O PHE B 230 N VAL B 223 SHEET 4 AA5 6 THR B 266 ASP B 272 1 O ILE B 268 N MET B 233 SHEET 5 AA5 6 ASP B 326 ARG B 331 -1 O PHE B 329 N PHE B 269 SHEET 6 AA5 6 PHE B 291 ASP B 292 -1 N PHE B 291 O PHE B 330 SHEET 1 AA6 2 TRP B 307 ASP B 308 0 SHEET 2 AA6 2 LYS B 322 HIS B 323 -1 O HIS B 323 N TRP B 307 LINK O3' 3DR C 1 P DC C 2 1555 1555 1.61 LINK O3' 3DR D 1 P DC D 2 1555 1555 1.60 LINK OE2 GLU A 162 MG MG A 402 1555 1555 2.07 LINK MG MG A 402 O HOH A 519 1555 1555 2.17 LINK MG MG A 402 O HOH A 534 1555 1555 2.10 LINK MG MG A 402 O HOH A 538 1555 1555 2.04 LINK MG MG A 402 OP1 3DR D 1 1555 1555 2.07 LINK MG MG A 402 O HOH D 109 1555 1555 2.19 LINK OE2 GLU B 162 MG MG B 401 1555 1555 2.02 LINK MG MG B 401 O HOH B 523 1555 1555 2.06 LINK MG MG B 401 O HOH B 528 1555 1555 2.11 LINK MG MG B 401 O HOH B 531 1555 1555 2.05 LINK MG MG B 401 OP2 3DR C 1 1555 1555 2.11 LINK MG MG B 401 O HOH C 107 1555 1555 2.12 SITE 1 AC1 6 PHE A 209 PRO A 210 ASN A 211 GLU A 246 SITE 2 AC1 6 ARG A 249 THR A 253 SITE 1 AC2 6 GLU A 162 HOH A 519 HOH A 534 HOH A 538 SITE 2 AC2 6 3DR D 1 HOH D 109 SITE 1 AC3 6 GLU B 162 HOH B 523 HOH B 528 HOH B 531 SITE 2 AC3 6 3DR C 1 HOH C 107 SITE 1 AC4 5 CYS B 149 TYR B 153 VAL B 345 GLY B 346 SITE 2 AC4 5 LEU B 347 SITE 1 AC5 3 PRO A 208 ILE B 180 ILE B 181 SITE 1 AC6 25 ASN B 130 GLU B 162 HIS B 236 SER B 239 SITE 2 AC6 25 THR B 240 ASP B 272 ASN B 274 ARG B 276 SITE 3 AC6 25 TRP B 307 ILE B 317 TYR B 321 PHE B 325 SITE 4 AC6 25 HIS B 359 MG B 401 HOH B 528 HOH B 531 SITE 5 AC6 25 DG C 3 HOH C 101 HOH C 102 HOH C 103 SITE 6 AC6 25 HOH C 105 HOH C 107 HOH C 109 DC D 8 SITE 7 AC6 25 DG D 9 SITE 1 AC7 23 ASN A 130 GLU A 162 HIS A 236 SER A 239 SITE 2 AC7 23 THR A 240 ASP A 272 ASN A 274 ARG A 276 SITE 3 AC7 23 TRP A 307 ILE A 317 TYR A 321 HIS A 323 SITE 4 AC7 23 HIS A 359 MG A 402 HOH A 519 HOH A 534 SITE 5 AC7 23 DC C 8 DG C 9 DG D 3 HOH D 101 SITE 6 AC7 23 HOH D 102 HOH D 107 HOH D 109 CRYST1 54.615 67.662 166.745 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005997 0.00000