HEADER UNKNOWN FUNCTION 08-MAR-16 5IO8 TITLE SALMONELLA TYPHIMURIUM VIRG-LIKE (STV) PROTEIN AT 2.19 ANGSTROM TITLE 2 RESOLUTION SOLVED BY IODINE SAD. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRG-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-135; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FIRST FOUR RESIDUES GSHM ARE FROM VECTOR. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM STR. SL1344; SOURCE 4 ORGANISM_COMMON: SALMONELLA TYPHIMURIUM SL1344; SOURCE 5 ORGANISM_TAXID: 216597; SOURCE 6 STRAIN: SL1344; SOURCE 7 GENE: SL1344_RS01575; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LTXXQ MOTIF, CPXP_LIKE FAMILY, VIRG-LIKE PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.K.PANDEY,S.RAY,M.SUAR,N.S.BHAVESH REVDAT 2 20-MAR-24 5IO8 1 LINK REVDAT 1 15-MAR-17 5IO8 0 JRNL AUTH N.K.PANDEY,S.RAY,M.SUAR,N.S.BHAVESH JRNL TITL SALMONELLA TYPHIMURIUM VIRG-LIKE (STV) PROTEIN AT AT 2.19 JRNL TITL 2 ANGSTROM RESOLUTION BY SAD. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3047 - 5.5140 1.00 1281 134 0.2070 0.2365 REMARK 3 2 5.5140 - 4.3804 1.00 1247 154 0.1877 0.2041 REMARK 3 3 4.3804 - 3.8278 1.00 1278 148 0.1678 0.2177 REMARK 3 4 3.8278 - 3.4783 1.00 1267 130 0.1973 0.2330 REMARK 3 5 3.4783 - 3.2293 1.00 1255 151 0.2073 0.2651 REMARK 3 6 3.2293 - 3.0391 1.00 1283 135 0.2158 0.2502 REMARK 3 7 3.0391 - 2.8870 1.00 1274 142 0.2290 0.2453 REMARK 3 8 2.8870 - 2.7614 1.00 1272 144 0.2166 0.3014 REMARK 3 9 2.7614 - 2.6551 1.00 1264 132 0.2197 0.2707 REMARK 3 10 2.6551 - 2.5636 1.00 1251 152 0.2284 0.2403 REMARK 3 11 2.5636 - 2.4834 1.00 1266 135 0.2171 0.2810 REMARK 3 12 2.4834 - 2.4125 1.00 1244 141 0.2138 0.3336 REMARK 3 13 2.4125 - 2.3490 1.00 1297 118 0.2118 0.2653 REMARK 3 14 2.3490 - 2.2917 0.99 1260 165 0.2197 0.2486 REMARK 3 15 2.2917 - 2.2396 1.00 1236 132 0.2390 0.3138 REMARK 3 16 2.2396 - 2.1920 0.97 1262 146 0.2426 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1611 REMARK 3 ANGLE : 1.193 2198 REMARK 3 CHIRALITY : 0.054 257 REMARK 3 PLANARITY : 0.009 284 REMARK 3 DIHEDRAL : 14.931 578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9727 5.2190 13.7217 REMARK 3 T TENSOR REMARK 3 T11: 0.6219 T22: 0.8019 REMARK 3 T33: 0.5718 T12: -0.0874 REMARK 3 T13: 0.0554 T23: 0.0920 REMARK 3 L TENSOR REMARK 3 L11: 0.3152 L22: 0.1418 REMARK 3 L33: 1.6006 L12: -0.1239 REMARK 3 L13: 0.4400 L23: 0.1449 REMARK 3 S TENSOR REMARK 3 S11: -0.1735 S12: -0.7227 S13: -1.0469 REMARK 3 S21: 0.4150 S22: -0.0464 S23: 0.5937 REMARK 3 S31: 0.0185 S32: -1.4447 S33: -0.0174 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3642 4.2458 11.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.4478 T22: 0.2684 REMARK 3 T33: 0.4016 T12: 0.0209 REMARK 3 T13: -0.0582 T23: 0.0952 REMARK 3 L TENSOR REMARK 3 L11: 1.1608 L22: 1.3281 REMARK 3 L33: 1.0544 L12: -0.6922 REMARK 3 L13: -0.3358 L23: 0.0831 REMARK 3 S TENSOR REMARK 3 S11: 0.5076 S12: 0.1814 S13: -0.4689 REMARK 3 S21: -0.1610 S22: 0.1718 S23: -0.2046 REMARK 3 S31: 0.4039 S32: -0.1240 S33: 0.0263 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9294 10.1996 30.4371 REMARK 3 T TENSOR REMARK 3 T11: 0.7192 T22: 0.5490 REMARK 3 T33: 0.4384 T12: -0.0940 REMARK 3 T13: 0.0422 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 5.4269 L22: 2.5132 REMARK 3 L33: 8.8911 L12: 2.4595 REMARK 3 L13: -6.0407 L23: -4.4787 REMARK 3 S TENSOR REMARK 3 S11: 1.3122 S12: -1.4612 S13: -0.3037 REMARK 3 S21: 0.8658 S22: -1.0856 S23: -0.5767 REMARK 3 S31: 0.7313 S32: 1.0211 S33: 0.0444 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9898 16.1325 29.8661 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.4223 REMARK 3 T33: 0.4047 T12: 0.0952 REMARK 3 T13: -0.0190 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.8504 L22: 0.9651 REMARK 3 L33: 1.4214 L12: 0.3266 REMARK 3 L13: -0.7620 L23: 0.8846 REMARK 3 S TENSOR REMARK 3 S11: 0.1258 S12: -0.3501 S13: 0.0310 REMARK 3 S21: 0.0294 S22: 0.2776 S23: -0.1697 REMARK 3 S31: 0.0119 S32: 0.7462 S33: 0.0016 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5005 15.5712 9.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 0.9679 REMARK 3 T33: 0.4738 T12: 0.1770 REMARK 3 T13: -0.0391 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.4439 L22: 0.7678 REMARK 3 L33: 0.1609 L12: 0.3063 REMARK 3 L13: -0.0933 L23: -0.3449 REMARK 3 S TENSOR REMARK 3 S11: -0.1457 S12: -1.1283 S13: 0.3464 REMARK 3 S21: 0.4074 S22: 0.3560 S23: -0.0830 REMARK 3 S31: 0.0245 S32: -0.5923 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1786 17.9629 47.2831 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.3124 REMARK 3 T33: 0.3662 T12: 0.0029 REMARK 3 T13: -0.0504 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.8524 L22: 1.0974 REMARK 3 L33: 2.2137 L12: -0.9499 REMARK 3 L13: 0.7675 L23: -0.6420 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: -0.3409 S13: -0.2500 REMARK 3 S21: -0.0998 S22: 0.0446 S23: 0.0862 REMARK 3 S31: 0.1593 S32: -0.0990 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9989 24.6737 14.9959 REMARK 3 T TENSOR REMARK 3 T11: 0.6302 T22: 0.6236 REMARK 3 T33: 0.6378 T12: 0.1800 REMARK 3 T13: 0.0924 T23: 0.2179 REMARK 3 L TENSOR REMARK 3 L11: 0.0589 L22: 0.1011 REMARK 3 L33: 0.5626 L12: 0.0412 REMARK 3 L13: 0.0193 L23: 0.0711 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0622 S13: 0.1440 REMARK 3 S21: -0.4557 S22: 0.0293 S23: 0.3354 REMARK 3 S31: -1.6341 S32: -0.4311 S33: 0.0155 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.2667 22.1355 36.1116 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.3505 REMARK 3 T33: 0.4343 T12: 0.0262 REMARK 3 T13: -0.0109 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 1.5999 L22: 1.0667 REMARK 3 L33: 0.8426 L12: -0.2482 REMARK 3 L13: -1.0567 L23: -0.1974 REMARK 3 S TENSOR REMARK 3 S11: 0.2404 S12: -0.2812 S13: 0.1708 REMARK 3 S21: 0.0232 S22: -0.0270 S23: -0.0594 REMARK 3 S31: -0.5651 S32: 0.4586 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2698 7.8625 51.5149 REMARK 3 T TENSOR REMARK 3 T11: 0.5351 T22: 0.6406 REMARK 3 T33: 0.4942 T12: 0.1282 REMARK 3 T13: -0.0132 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.1477 L22: 0.3733 REMARK 3 L33: 0.1426 L12: 0.2328 REMARK 3 L13: 0.0120 L23: 0.0652 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: 0.0377 S13: -0.6798 REMARK 3 S21: -0.2660 S22: 0.2740 S23: 0.0786 REMARK 3 S31: 0.2497 S32: 0.5824 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 879 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1) UNMODELLED BLOB NEAR LEU 56 AND GLN 73 IN CHAIN A. REMARK 3 REMARK 3 REMARK 3 2) UNMODELLED BLOB NEAR LEU 56 AND GLN 73 IN CHAIN B. REMARK 3 REMARK 3 REMARK 3 3) UNMODELLED BLOB NEAR ALA 55 IN CHAIN A. REMARK 4 REMARK 4 5IO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.771 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, POTASSIUM PHOSPHATE DIBASIC. PH=4.6-5.2. CRYSTAL REMARK 280 WAS SOAKED IN 100MM SODIUM IODIDE FOR 5 MINUTES BEFORE FLASH REMARK 280 FREEZING., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.05750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.13850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.05750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.13850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 GLY A 50 REMARK 465 ILE A 51 REMARK 465 LYS A 52 REMARK 465 ASP A 53 REMARK 465 GLU A 116 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 LYS B 49 REMARK 465 GLY B 50 REMARK 465 ILE B 51 REMARK 465 LYS B 52 REMARK 465 ASP B 53 REMARK 465 GLY B 54 REMARK 465 LEU B 115 REMARK 465 GLU B 116 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 ARG A 88 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 GLN A 108 CG CD OE1 NE2 REMARK 470 GLN A 109 CG CD OE1 NE2 REMARK 470 GLN A 113 CG CD OE1 NE2 REMARK 470 LEU A 115 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 81 CG CD OE1 OE2 REMARK 470 GLN B 105 CG CD OE1 NE2 REMARK 470 GLN B 106 CG CD OE1 NE2 REMARK 470 GLN B 109 CG CD OE1 NE2 REMARK 470 GLN B 113 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 324 O HOH B 334 1.80 REMARK 500 O HOH A 331 O HOH A 336 1.88 REMARK 500 NE ARG A 31 O HOH A 301 1.94 REMARK 500 O HOH B 305 O HOH B 333 2.06 REMARK 500 OE1 GLU B 102 O HOH B 301 2.07 REMARK 500 OE1 GLN A 37 O HOH A 302 2.08 REMARK 500 OD1 ASN B 9 O HOH B 302 2.15 REMARK 500 O HOH B 309 O HOH B 335 2.17 REMARK 500 OE1 GLN B 82 O HOH B 303 2.18 REMARK 500 O HOH A 333 O HOH B 329 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 41 OG1 REMARK 620 2 THR B 41 OG1 46.1 REMARK 620 3 HOH B 328 O 92.4 137.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 206 DBREF 5IO8 A 1 116 PDB 5IO8 5IO8 1 116 DBREF 5IO8 B 1 116 PDB 5IO8 5IO8 1 116 SEQRES 1 A 116 GLY SER HIS MET THR ALA VAL PRO ASN PRO PRO LEU PRO SEQRES 2 A 116 ALA GLN ASP PRO ILE VAL GLN HIS LEU LYS LEU THR ASN SEQRES 3 A 116 ASP GLN ILE THR ARG ILE LYS LYS LEU HIS GLN GLN LEU SEQRES 4 A 116 GLU THR ASP VAL SER GLN ILE SER MET LYS GLY ILE LYS SEQRES 5 A 116 ASP GLY ALA LEU ILE GLU VAL ILE LYS SER GLY LYS TRP SEQRES 6 A 116 ASP ASP ALA ALA VAL LYS GLN GLN LEU ALA ALA PHE SER SEQRES 7 A 116 ASN ILE GLU GLN GLN ALA ARG TYR TYR ARG VAL LYS TYR SEQRES 8 A 116 TYR PHE ASP LEU SER LYS VAL LEU THR PRO GLU GLN ARG SEQRES 9 A 116 GLN GLN VAL GLN GLN ASP LEU ALA GLN ALA LEU GLU SEQRES 1 B 116 GLY SER HIS MET THR ALA VAL PRO ASN PRO PRO LEU PRO SEQRES 2 B 116 ALA GLN ASP PRO ILE VAL GLN HIS LEU LYS LEU THR ASN SEQRES 3 B 116 ASP GLN ILE THR ARG ILE LYS LYS LEU HIS GLN GLN LEU SEQRES 4 B 116 GLU THR ASP VAL SER GLN ILE SER MET LYS GLY ILE LYS SEQRES 5 B 116 ASP GLY ALA LEU ILE GLU VAL ILE LYS SER GLY LYS TRP SEQRES 6 B 116 ASP ASP ALA ALA VAL LYS GLN GLN LEU ALA ALA PHE SER SEQRES 7 B 116 ASN ILE GLU GLN GLN ALA ARG TYR TYR ARG VAL LYS TYR SEQRES 8 B 116 TYR PHE ASP LEU SER LYS VAL LEU THR PRO GLU GLN ARG SEQRES 9 B 116 GLN GLN VAL GLN GLN ASP LEU ALA GLN ALA LEU GLU HET IOD A 201 1 HET IOD A 202 1 HET IOD A 203 1 HET IOD A 204 1 HET IOD A 205 1 HET IOD A 206 1 HET IOD A 207 1 HET NA A 208 1 HET NA A 209 1 HET NA A 210 1 HET NA A 211 1 HET PO4 A 212 5 HET PO4 A 213 5 HET PO4 A 214 5 HET IOD B 201 1 HET IOD B 202 1 HET IOD B 203 1 HET IOD B 204 1 HET IOD B 205 1 HET IOD B 206 1 HET IOD B 207 1 HET NA B 208 1 HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 IOD 14(I 1-) FORMUL 10 NA 5(NA 1+) FORMUL 14 PO4 3(O4 P 3-) FORMUL 25 HOH *78(H2 O) HELIX 1 AA1 LEU A 12 GLN A 15 5 4 HELIX 2 AA2 ASP A 16 HIS A 21 1 6 HELIX 3 AA3 THR A 25 SER A 44 1 20 HELIX 4 AA4 ALA A 55 GLY A 63 1 9 HELIX 5 AA5 ASP A 66 LYS A 97 1 32 HELIX 6 AA6 THR A 100 LEU A 115 1 16 HELIX 7 AA7 LEU B 12 ASP B 16 5 5 HELIX 8 AA8 VAL B 19 LYS B 23 5 5 HELIX 9 AA9 THR B 25 GLN B 45 1 21 HELIX 10 AB1 LEU B 56 GLY B 63 1 8 HELIX 11 AB2 ASP B 66 LYS B 97 1 32 HELIX 12 AB3 THR B 100 ALA B 114 1 15 LINK OG1 THR A 41 NA NA A 209 1555 1555 3.06 LINK OG SER A 78 NA NA A 208 1555 1555 2.34 LINK NA NA A 209 OG1 THR B 41 3656 1555 3.18 LINK NA NA A 209 O HOH B 328 1555 4556 2.42 LINK NA NA A 211 O HOH A 335 1555 2655 2.74 CISPEP 1 PRO B 8 ASN B 9 0 12.96 SITE 1 AC1 2 GLN A 106 HOH A 319 SITE 1 AC2 1 HOH A 342 SITE 1 AC3 3 LEU A 12 GLN A 37 IOD A 204 SITE 1 AC4 2 LYS A 33 IOD A 203 SITE 1 AC5 2 GLY A 54 LEU A 56 SITE 1 AC6 1 GLN B 15 SITE 1 AC7 4 SER A 78 NA A 210 GLU B 81 ARG B 85 SITE 1 AC8 3 THR A 41 THR B 41 HOH B 328 SITE 1 AC9 3 GLU A 81 ARG A 85 NA A 208 SITE 1 AD1 3 TRP A 65 ASP A 67 HOH A 335 SITE 1 AD2 4 PRO A 13 ALA A 14 ILE A 29 LYS A 33 SITE 1 AD3 3 LYS A 49 GLN A 73 HOH A 308 SITE 1 AD4 3 GLU A 102 ASN B 26 ASP B 27 SITE 1 AD5 2 ARG A 31 GLU B 102 SITE 1 AD6 3 ALA B 55 LEU B 56 GLN B 73 SITE 1 AD7 1 LYS A 90 SITE 1 AD8 1 ARG B 31 CRYST1 60.115 60.277 62.603 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015974 0.00000