HEADER TRANSFERASE 08-MAR-16 5IOI TITLE X-RAY STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL MIGRATION PROTEIN DOUBLECORTIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 133-231; COMPND 5 SYNONYM: DOUBLIN,LISSENCEPHALIN-X,LIS-X; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCX, DBCN, LISX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DCX DOMAIN, UBIQUITIN-LIKE FOLD, MICROTUBULE ASSOCIATED, SIGNALING KEYWDS 2 PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RUF,J.BENZ,D.BURGER,B.D'ARCY,M.DEBULPAEP,P.DI LELLO,D.FRY,W.HUBER, AUTHOR 2 T.KREMER,T.LAEREMANS,H.MATILE,A.ROSS,M.G.RUDOLPH,A.C.RUFER,A.SHARMA, AUTHOR 3 M.O.STEINMETZ,J.STEYAERT,G.SCHOCH,M.STIHLE,R.THOMA REVDAT 6 10-JAN-24 5IOI 1 REMARK REVDAT 5 14-DEC-16 5IOI 1 TITLE REVDAT 4 10-AUG-16 5IOI 1 JRNL REVDAT 3 08-JUN-16 5IOI 1 JRNL REVDAT 2 18-MAY-16 5IOI 1 JRNL REVDAT 1 23-MAR-16 5IOI 0 JRNL AUTH D.BURGER,M.STIHLE,A.SHARMA,P.DI LELLO,J.BENZ,B.D'ARCY, JRNL AUTH 2 M.DEBULPAEP,D.FRY,W.HUBER,T.KREMER,T.LAEREMANS,H.MATILE, JRNL AUTH 3 A.ROSS,A.C.RUFER,G.SCHOCH,M.O.STEINMETZ,J.STEYAERT, JRNL AUTH 4 M.G.RUDOLPH,R.THOMA,A.RUF JRNL TITL CRYSTAL STRUCTURES OF THE HUMAN DOUBLECORTIN C- AND JRNL TITL 2 N-TERMINAL DOMAINS IN COMPLEX WITH SPECIFIC ANTIBODIES. JRNL REF J.BIOL.CHEM. V. 291 16292 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27226599 JRNL DOI 10.1074/JBC.M116.726547 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2200 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3106 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2499 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2956 REMARK 3 BIN R VALUE (WORKING SET) : 0.2494 REMARK 3 BIN FREE R VALUE : 0.2595 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.83 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52050 REMARK 3 B22 (A**2) : -0.52050 REMARK 3 B33 (A**2) : 1.04100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.307 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4827 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6503 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1709 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 710 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4827 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 591 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5419 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.44 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 30 2009 REMARK 200 DATA SCALING SOFTWARE : SADABS 2008/2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64500 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 2BQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: N-DCXDD CRYSTALS WERE EITHER OBTAINED REMARK 280 OUT OF 20MM CAPS PH 10.5, 100 MM NACL, 5 MM TCEP OR 20 MM HEPES REMARK 280 PH 7.5, 100 MM NACL, 5 MM DTT, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.69633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 251.39267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 188.54450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 314.24083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.84817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 125.69633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 251.39267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 314.24083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 188.54450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.84817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 125 REMARK 465 VAL B 126 REMARK 465 PRO B 127 REMARK 465 ARG B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 HIS B 131 REMARK 465 MET B 132 REMARK 465 LYS B 221 REMARK 465 ASN B 222 REMARK 465 VAL B 223 REMARK 465 ASN B 224 REMARK 465 PRO B 225 REMARK 465 ASN B 226 REMARK 465 TRP B 227 REMARK 465 SER B 228 REMARK 465 VAL B 229 REMARK 465 ASN B 230 REMARK 465 VAL B 231 REMARK 465 LEU C 125 REMARK 465 VAL C 126 REMARK 465 PRO C 127 REMARK 465 ARG C 128 REMARK 465 GLY C 129 REMARK 465 SER C 130 REMARK 465 HIS C 131 REMARK 465 MET C 132 REMARK 465 VAL C 229 REMARK 465 ASN C 230 REMARK 465 VAL C 231 REMARK 465 LEU D 125 REMARK 465 VAL D 126 REMARK 465 PRO D 127 REMARK 465 ARG D 128 REMARK 465 GLY D 129 REMARK 465 SER D 130 REMARK 465 HIS D 131 REMARK 465 LYS D 221 REMARK 465 ASN D 222 REMARK 465 VAL D 223 REMARK 465 ASN D 224 REMARK 465 PRO D 225 REMARK 465 ASN D 226 REMARK 465 TRP D 227 REMARK 465 SER D 228 REMARK 465 VAL D 229 REMARK 465 ASN D 230 REMARK 465 VAL D 231 REMARK 465 LEU F 125 REMARK 465 VAL F 126 REMARK 465 PRO F 127 REMARK 465 ARG F 128 REMARK 465 GLY F 129 REMARK 465 SER F 130 REMARK 465 HIS F 131 REMARK 465 MET F 132 REMARK 465 SER F 228 REMARK 465 VAL F 229 REMARK 465 ASN F 230 REMARK 465 VAL F 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET D 132 N ALA D 133 1.18 REMARK 500 O HOH A 332 O HOH B 316 1.83 REMARK 500 O HOH A 359 O HOH A 369 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET D 132 C ALA D 133 N -0.526 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET D 132 CA - C - N ANGL. DEV. = 54.2 DEGREES REMARK 500 MET D 132 O - C - N ANGL. DEV. = -56.3 DEGREES REMARK 500 ALA D 133 C - N - CA ANGL. DEV. = 44.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 131 -5.21 84.53 REMARK 500 ASN B 175 -1.68 -58.09 REMARK 500 ILE B 176 -60.60 -104.05 REMARK 500 LEU B 178 71.17 52.55 REMARK 500 SER C 173 112.22 -34.44 REMARK 500 ASN C 212 33.77 -74.43 REMARK 500 TRP C 227 -14.83 163.21 REMARK 500 LEU D 178 73.82 53.21 REMARK 500 HIS E 131 -7.75 81.55 REMARK 500 ASP E 174 113.05 -166.73 REMARK 500 ILE E 176 -65.89 -99.50 REMARK 500 SER F 173 103.24 -30.31 REMARK 500 ASN F 212 46.70 -70.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET D 132 -19.62 REMARK 500 REMARK 500 REMARK: NULL DBREF 5IOI A 133 231 UNP O43602 DCX_HUMAN 133 231 DBREF 5IOI B 133 231 UNP O43602 DCX_HUMAN 133 231 DBREF 5IOI C 133 231 UNP O43602 DCX_HUMAN 133 231 DBREF 5IOI D 133 231 UNP O43602 DCX_HUMAN 133 231 DBREF 5IOI E 133 231 UNP O43602 DCX_HUMAN 133 231 DBREF 5IOI F 133 231 UNP O43602 DCX_HUMAN 133 231 SEQADV 5IOI LEU A 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL A 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO A 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG A 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY A 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER A 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS A 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET A 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP A 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP A 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQADV 5IOI LEU B 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL B 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO B 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG B 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY B 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER B 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS B 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET B 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP B 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP B 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQADV 5IOI LEU C 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL C 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO C 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG C 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY C 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER C 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS C 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET C 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP C 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP C 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQADV 5IOI LEU D 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL D 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO D 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG D 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY D 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER D 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS D 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET D 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP D 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP D 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQADV 5IOI LEU E 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL E 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO E 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG E 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY E 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER E 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS E 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET E 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP E 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP E 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQADV 5IOI LEU F 125 UNP O43602 EXPRESSION TAG SEQADV 5IOI VAL F 126 UNP O43602 EXPRESSION TAG SEQADV 5IOI PRO F 127 UNP O43602 EXPRESSION TAG SEQADV 5IOI ARG F 128 UNP O43602 EXPRESSION TAG SEQADV 5IOI GLY F 129 UNP O43602 EXPRESSION TAG SEQADV 5IOI SER F 130 UNP O43602 EXPRESSION TAG SEQADV 5IOI HIS F 131 UNP O43602 EXPRESSION TAG SEQADV 5IOI MET F 132 UNP O43602 EXPRESSION TAG SEQADV 5IOI ASP F 215 UNP O43602 LYS 215 ENGINEERED MUTATION SEQADV 5IOI ASP F 216 UNP O43602 LYS 216 ENGINEERED MUTATION SEQRES 1 A 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 A 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 A 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 A 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 A 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 A 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 A 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 A 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 A 107 VAL ASN VAL SEQRES 1 B 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 B 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 B 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 B 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 B 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 B 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 B 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 B 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 B 107 VAL ASN VAL SEQRES 1 C 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 C 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 C 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 C 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 C 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 C 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 C 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 C 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 C 107 VAL ASN VAL SEQRES 1 D 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 D 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 D 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 D 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 D 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 D 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 D 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 D 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 D 107 VAL ASN VAL SEQRES 1 E 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 E 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 E 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 E 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 E 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 E 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 E 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 E 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 E 107 VAL ASN VAL SEQRES 1 F 107 LEU VAL PRO ARG GLY SER HIS MET ALA LYS LYS VAL ARG SEQRES 2 F 107 PHE TYR ARG ASN GLY ASP ARG TYR PHE LYS GLY ILE VAL SEQRES 3 F 107 TYR ALA VAL SER SER ASP ARG PHE ARG SER PHE ASP ALA SEQRES 4 F 107 LEU LEU ALA ASP LEU THR ARG SER LEU SER ASP ASN ILE SEQRES 5 F 107 ASN LEU PRO GLN GLY VAL ARG TYR ILE TYR THR ILE ASP SEQRES 6 F 107 GLY SER ARG LYS ILE GLY SER MET ASP GLU LEU GLU GLU SEQRES 7 F 107 GLY GLU SER TYR VAL CYS SER SER ASP ASN PHE PHE ASP SEQRES 8 F 107 ASP VAL GLU TYR THR LYS ASN VAL ASN PRO ASN TRP SER SEQRES 9 F 107 VAL ASN VAL FORMUL 7 HOH *353(H2 O) HELIX 1 AA1 SER A 160 SER A 173 1 14 HELIX 2 AA2 SER A 196 LEU A 200 5 5 HELIX 3 AA3 SER B 160 SER B 173 1 14 HELIX 4 AA4 SER B 196 LEU B 200 5 5 HELIX 5 AA5 SER C 160 SER C 173 1 14 HELIX 6 AA6 SER C 196 LEU C 200 5 5 HELIX 7 AA7 SER D 160 SER D 173 1 14 HELIX 8 AA8 SER D 196 LEU D 200 5 5 HELIX 9 AA9 SER E 160 SER E 173 1 14 HELIX 10 AB1 SER F 160 SER F 173 1 14 HELIX 11 AB2 SER F 196 LEU F 200 5 5 SHEET 1 AA1 5 ILE A 149 VAL A 153 0 SHEET 2 AA1 5 LYS A 134 ARG A 140 -1 N LYS A 134 O VAL A 153 SHEET 3 AA1 5 SER A 205 SER A 209 1 O TYR A 206 N TYR A 139 SHEET 4 AA1 5 TYR A 184 THR A 187 -1 N TYR A 186 O VAL A 207 SHEET 5 AA1 5 LYS A 193 ILE A 194 -1 O ILE A 194 N ILE A 185 SHEET 1 AA2 5 ILE B 149 VAL B 153 0 SHEET 2 AA2 5 LYS B 134 ARG B 140 -1 N LYS B 134 O VAL B 153 SHEET 3 AA2 5 SER B 205 SER B 209 1 O TYR B 206 N TYR B 139 SHEET 4 AA2 5 TYR B 184 THR B 187 -1 N TYR B 184 O SER B 209 SHEET 5 AA2 5 LYS B 193 ILE B 194 -1 O ILE B 194 N ILE B 185 SHEET 1 AA3 5 ILE C 149 VAL C 153 0 SHEET 2 AA3 5 LYS C 134 ARG C 140 -1 N LYS C 134 O VAL C 153 SHEET 3 AA3 5 SER C 205 SER C 209 1 O TYR C 206 N TYR C 139 SHEET 4 AA3 5 TYR C 184 THR C 187 -1 N TYR C 184 O SER C 209 SHEET 5 AA3 5 LYS C 193 ILE C 194 -1 O ILE C 194 N ILE C 185 SHEET 1 AA4 5 ILE D 149 VAL D 153 0 SHEET 2 AA4 5 LYS D 134 ARG D 140 -1 N LYS D 134 O VAL D 153 SHEET 3 AA4 5 SER D 205 SER D 209 1 O TYR D 206 N TYR D 139 SHEET 4 AA4 5 TYR D 184 THR D 187 -1 N TYR D 184 O SER D 209 SHEET 5 AA4 5 LYS D 193 ILE D 194 -1 O ILE D 194 N ILE D 185 SHEET 1 AA5 5 ILE E 149 VAL E 153 0 SHEET 2 AA5 5 LYS E 134 ARG E 140 -1 N LYS E 134 O VAL E 153 SHEET 3 AA5 5 SER E 205 SER E 209 1 O TYR E 206 N TYR E 139 SHEET 4 AA5 5 TYR E 184 THR E 187 -1 N TYR E 186 O VAL E 207 SHEET 5 AA5 5 LYS E 193 ILE E 194 -1 O ILE E 194 N ILE E 185 SHEET 1 AA6 5 ILE F 149 VAL F 153 0 SHEET 2 AA6 5 LYS F 134 ARG F 140 -1 N LYS F 134 O VAL F 153 SHEET 3 AA6 5 SER F 205 SER F 209 1 O TYR F 206 N TYR F 139 SHEET 4 AA6 5 TYR F 184 THR F 187 -1 N TYR F 186 O VAL F 207 SHEET 5 AA6 5 LYS F 193 ILE F 194 -1 O ILE F 194 N ILE F 185 CRYST1 97.719 97.719 377.089 90.00 90.00 120.00 P 61 2 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010233 0.005908 0.000000 0.00000 SCALE2 0.000000 0.011817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002652 0.00000