HEADER HYDROLASE 08-MAR-16 5IOJ TITLE CRYSTAL STRUCTURE OF THE SPHINGOBIUM SP. TCM1 PHOSPHOTRIESTERASE TITLE 2 WITHOUT THE BINUCLEAR MANGANESE CENTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKYLPHOSPHORUS HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. TCM1; SOURCE 3 ORGANISM_TAXID: 453246; SOURCE 4 GENE: HAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRIESTERASE, HYDROLASE, BETA-PROPELLER, ORGANOPHOSPHATE KEYWDS 2 DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR M.F.MABANGLO,F.M.RAUSHEL REVDAT 6 27-SEP-23 5IOJ 1 REMARK REVDAT 5 01-JAN-20 5IOJ 1 REMARK REVDAT 4 27-JUN-18 5IOJ 1 JRNL REMARK REVDAT 3 03-AUG-16 5IOJ 1 JRNL REVDAT 2 20-JUL-16 5IOJ 1 JRNL REVDAT 1 13-JUL-16 5IOJ 0 JRNL AUTH M.F.MABANGLO,D.F.XIANG,A.N.BIGLEY,F.M.RAUSHEL JRNL TITL STRUCTURE OF A NOVEL PHOSPHOTRIESTERASE FROM SPHINGOBIUM SP. JRNL TITL 2 TCM1: A FAMILIAR BINUCLEAR METAL CENTER EMBEDDED IN A JRNL TITL 3 SEVEN-BLADED BETA-PROPELLER PROTEIN FOLD. JRNL REF BIOCHEMISTRY V. 55 3963 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27353520 JRNL DOI 10.1021/ACS.BIOCHEM.6B00364 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 93200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 952 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979499 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HRM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04 M CITRIC ACID, 0.06 M BIS-TRIS REMARK 280 PROPANE, PH 6.4, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.15450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.24700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.96150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.24700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.15450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.96150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 MET A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ASN A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 LYS A 21 REMARK 465 PRO A 22 REMARK 465 VAL A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 MET A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 MET A 30 REMARK 465 VAL A 31 REMARK 465 GLU A 32 REMARK 465 ILE A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 THR A 37 REMARK 465 HIS A 38 REMARK 465 ASP A 39 REMARK 465 ARG A 40 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 SER A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 ILE A 48 REMARK 465 ARG A 49 REMARK 465 THR A 50 REMARK 465 THR A 51 REMARK 465 GLU A 52 REMARK 465 ALA A 53 REMARK 465 LEU A 54 REMARK 465 SER A 55 REMARK 465 ARG A 56 REMARK 465 LEU A 57 REMARK 465 THR A 58 REMARK 465 ALA A 59 REMARK 465 VAL A 60 REMARK 465 THR A 61 REMARK 465 ALA A 62 REMARK 465 THR A 63 REMARK 465 LYS A 64 REMARK 465 ILE A 65 REMARK 465 ARG A 66 REMARK 465 ARG A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 465 VAL A 70 REMARK 465 VAL A 71 REMARK 465 ALA A 72 REMARK 465 PRO A 73 REMARK 465 LEU A 74 REMARK 465 GLY A 75 REMARK 465 LEU A 76 REMARK 465 ALA A 77 REMARK 465 CYS A 78 REMARK 465 LEU A 79 REMARK 465 CYS A 80 REMARK 465 SER A 81 REMARK 465 GLY A 82 REMARK 465 TRP A 83 REMARK 465 PRO A 84 REMARK 465 ALA A 85 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 VAL A 582 REMARK 465 LYS A 583 REMARK 465 LEU A 584 REMARK 465 GLU A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ARG B 3 REMARK 465 MET B 4 REMARK 465 LEU B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 HIS B 9 REMARK 465 GLY B 10 REMARK 465 ASN B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 ASP B 16 REMARK 465 ASP B 17 REMARK 465 LEU B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 LYS B 21 REMARK 465 PRO B 22 REMARK 465 VAL B 23 REMARK 465 GLY B 24 REMARK 465 VAL B 25 REMARK 465 MET B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 MET B 30 REMARK 465 VAL B 31 REMARK 465 GLU B 32 REMARK 465 ILE B 33 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 ALA B 36 REMARK 465 THR B 37 REMARK 465 HIS B 38 REMARK 465 ASP B 39 REMARK 465 ARG B 40 REMARK 465 ALA B 41 REMARK 465 SER B 42 REMARK 465 ARG B 43 REMARK 465 ARG B 44 REMARK 465 SER B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 ILE B 48 REMARK 465 ARG B 49 REMARK 465 THR B 50 REMARK 465 THR B 51 REMARK 465 GLU B 52 REMARK 465 ALA B 53 REMARK 465 LEU B 54 REMARK 465 SER B 55 REMARK 465 ARG B 56 REMARK 465 LEU B 57 REMARK 465 THR B 58 REMARK 465 ALA B 59 REMARK 465 VAL B 60 REMARK 465 THR B 61 REMARK 465 ALA B 62 REMARK 465 THR B 63 REMARK 465 LYS B 64 REMARK 465 ILE B 65 REMARK 465 ARG B 66 REMARK 465 ARG B 67 REMARK 465 LEU B 68 REMARK 465 ALA B 69 REMARK 465 VAL B 70 REMARK 465 VAL B 71 REMARK 465 ALA B 72 REMARK 465 PRO B 73 REMARK 465 LEU B 74 REMARK 465 GLY B 75 REMARK 465 LEU B 76 REMARK 465 ALA B 77 REMARK 465 CYS B 78 REMARK 465 LEU B 79 REMARK 465 CYS B 80 REMARK 465 SER B 81 REMARK 465 GLY B 82 REMARK 465 TRP B 83 REMARK 465 PRO B 84 REMARK 465 ALA B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 LYS B 583 REMARK 465 LEU B 584 REMARK 465 GLU B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 737 O HOH A 1040 2.11 REMARK 500 O HOH B 1027 O HOH B 1041 2.14 REMARK 500 O HOH A 902 O HOH A 957 2.14 REMARK 500 OE1 GLN B 88 NH2 ARG B 576 2.16 REMARK 500 O HOH B 725 O HOH B 878 2.17 REMARK 500 O HOH B 791 O HOH B 1012 2.17 REMARK 500 O SER A 349 O HOH A 601 2.18 REMARK 500 OD1 ASP A 444 O HOH A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 498 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 498 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 138 -83.59 -127.86 REMARK 500 ASP A 144 -120.75 52.81 REMARK 500 VAL A 200 -116.57 51.89 REMARK 500 LEU A 278 -116.40 44.01 REMARK 500 THR A 315 79.30 -119.83 REMARK 500 SER A 349 -47.45 -130.57 REMARK 500 ASP A 352 85.52 12.82 REMARK 500 VAL A 353 82.84 53.99 REMARK 500 LYS A 376 86.38 108.30 REMARK 500 ALA A 406 -152.65 -75.76 REMARK 500 LEU A 408 -132.36 53.39 REMARK 500 PHE A 476 166.18 76.72 REMARK 500 ASN A 477 68.16 -167.15 REMARK 500 ASN A 484 79.77 -152.01 REMARK 500 PHE A 493 -114.87 56.80 REMARK 500 LEU B 138 -82.06 -126.06 REMARK 500 ASP B 144 -119.46 49.45 REMARK 500 VAL B 200 -117.21 53.22 REMARK 500 LEU B 278 -116.03 45.25 REMARK 500 THR B 315 76.95 -117.84 REMARK 500 ASP B 350 144.64 81.84 REMARK 500 ASP B 352 163.73 68.06 REMARK 500 VAL B 353 135.92 -33.36 REMARK 500 ALA B 406 -151.46 -76.78 REMARK 500 LEU B 408 -133.46 50.73 REMARK 500 PHE B 476 166.67 79.31 REMARK 500 ASN B 477 65.37 -169.28 REMARK 500 ASN B 484 72.28 -157.63 REMARK 500 PHE B 493 -112.83 53.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5HRM RELATED DB: PDB DBREF1 5IOJ A 1 583 UNP A0A077JBW9_9SPHN DBREF2 5IOJ A A0A077JBW9 1 583 DBREF1 5IOJ B 1 583 UNP A0A077JBW9_9SPHN DBREF2 5IOJ B A0A077JBW9 1 583 SEQADV 5IOJ LEU A 584 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ GLU A 585 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 586 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 587 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 588 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 589 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 590 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS A 591 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ LEU B 584 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ GLU B 585 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 586 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 587 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 588 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 589 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 590 UNP A0A077JBW EXPRESSION TAG SEQADV 5IOJ HIS B 591 UNP A0A077JBW EXPRESSION TAG SEQRES 1 A 591 MET LEU ARG MET LEU SER GLU ALA HIS GLY ASN VAL VAL SEQRES 2 A 591 LEU ALA ASP ASP LEU PRO ALA LYS PRO VAL GLY VAL MET SEQRES 3 A 591 LYS PRO GLY MET VAL GLU ILE GLY ALA ALA THR HIS ASP SEQRES 4 A 591 ARG ALA SER ARG ARG SER PRO THR ILE ARG THR THR GLU SEQRES 5 A 591 ALA LEU SER ARG LEU THR ALA VAL THR ALA THR LYS ILE SEQRES 6 A 591 ARG ARG LEU ALA VAL VAL ALA PRO LEU GLY LEU ALA CYS SEQRES 7 A 591 LEU CYS SER GLY TRP PRO ALA SER SER GLN VAL VAL ILE SEQRES 8 A 591 GLY PRO GLY ASP ARG PRO GLU THR GLY LEU GLN GLY GLN SEQRES 9 A 591 THR THR ILE GLU ASP VAL VAL SER GLY ARG SER LYS LEU SEQRES 10 A 591 PRO TYR HIS ALA GLY VAL ARG LEU VAL GLY ARG THR ASP SEQRES 11 A 591 ILE TRP ASN ARG GLY GLY ASN LEU GLN LEU SER TRP VAL SEQRES 12 A 591 ASP GLN CYS ALA TYR VAL SER THR PHE LYS GLN ALA GLY SEQRES 13 A 591 PRO ILE THR ALA ASN SER ARG SER ALA LEU PHE LEU ARG SEQRES 14 A 591 GLU PRO ALA GLY VAL ALA VAL ILE ASP VAL ARG ASP PRO SEQRES 15 A 591 ARG ALA PRO LYS PRO VAL ARG LEU LEU ARG ASP ARG GLY SEQRES 16 A 591 SER ILE ASP ALA VAL GLU THR MET HIS ALA ILE ALA ALA SEQRES 17 A 591 PRO GLY ARG LYS VAL LEU VAL ALA GLY ALA TYR SER GLY SEQRES 18 A 591 GLY ILE ALA GLY ARG GLY GLU GLU ASP ALA ALA TRP LEU SEQRES 19 A 591 SER ILE TYR ASP ALA SER ASN CYS LEU ASN PRO LYS LEU SEQRES 20 A 591 GLN SER GLU PHE LYS TRP PRO ALA ASN ILE HIS MET VAL SEQRES 21 A 591 THR ILE SER PRO ASN GLY ARG ARG VAL TYR GLY THR GLU SEQRES 22 A 591 VAL VAL PRO GLY LEU GLY SER GLY LYS GLY GLY LEU HIS SEQRES 23 A 591 VAL LEU ASP ILE SER ASP MET LYS ARG PRO ARG TYR LEU SEQRES 24 A 591 GLY ARG PHE GLY VAL THR ARG PRO ASN GLY LEU THR ALA SEQRES 25 A 591 GLY PHE THR PRO HIS GLU VAL SER ILE SER HIS ASP GLU SEQRES 26 A 591 ARG ARG ILE TYR ALA ALA VAL LEU ALA SER GLU THR GLY SEQRES 27 A 591 ASP VAL PRO VAL GLY ALA SER ILE LEU ALA SER ASP GLY SEQRES 28 A 591 ASP VAL PRO VAL GLU ASN GLY SER VAL TYR ILE LEU ASP SEQRES 29 A 591 ASN SER ASP ILE VAL ASP GLY ARG SER GLN PRO LYS MET SEQRES 30 A 591 ARG LEU VAL GLY GLU ALA LYS GLN GLY GLY PHE HIS SER SEQRES 31 A 591 VAL VAL PRO ALA SER ILE ASN GLY VAL PRO HIS LEU VAL SEQRES 32 A 591 GLY ALA ALA GLU LEU GLY ALA CYS PRO GLY THR TRP PRO SEQRES 33 A 591 ARG ILE ILE ASN ILE ALA ASP GLU LYS ASN PRO LYS ILE SEQRES 34 A 591 VAL GLY GLU PHE LYS LEU GLN MET ASN ILE LYS GLU ASN SEQRES 35 A 591 CYS ASP ALA ILE ARG PHE THR PRO ARG LYS GLU ASP PRO SEQRES 36 A 591 TYR ALA SER PHE ILE PRO ILE PRO ASP ILE THR ALA ARG SEQRES 37 A 591 LEU GLY ALA VAL GLY SER HIS PHE ASN ASP VAL ASP ASP SEQRES 38 A 591 ALA ARG ASN THR ARG LEU GLY LEU PHE PRO PHE PHE ALA SEQRES 39 A 591 GLY GLY VAL ARG ILE VAL ASP LEU ARG ASP PRO THR LYS SEQRES 40 A 591 PRO VAL GLU VAL GLY TYR TYR LYS PRO GLY ALA ASN PRO SEQRES 41 A 591 ASP THR PRO LEU SER GLY ASN GLY LEU ASN TRP THR GLY SEQRES 42 A 591 LEU ASN ASP GLN VAL THR ASP GLY CYS MET SER HIS VAL SEQRES 43 A 591 ARG TYR VAL PRO GLU SER GLY HIS ILE TRP PHE ALA CYS SEQRES 44 A 591 VAL THR THR GLY PHE HIS VAL VAL GLU LEU ASN PRO ASP SEQRES 45 A 591 LEU ARG ALA ARG LEU GLY PHE PRO THR VAL LYS LEU GLU SEQRES 46 A 591 HIS HIS HIS HIS HIS HIS SEQRES 1 B 591 MET LEU ARG MET LEU SER GLU ALA HIS GLY ASN VAL VAL SEQRES 2 B 591 LEU ALA ASP ASP LEU PRO ALA LYS PRO VAL GLY VAL MET SEQRES 3 B 591 LYS PRO GLY MET VAL GLU ILE GLY ALA ALA THR HIS ASP SEQRES 4 B 591 ARG ALA SER ARG ARG SER PRO THR ILE ARG THR THR GLU SEQRES 5 B 591 ALA LEU SER ARG LEU THR ALA VAL THR ALA THR LYS ILE SEQRES 6 B 591 ARG ARG LEU ALA VAL VAL ALA PRO LEU GLY LEU ALA CYS SEQRES 7 B 591 LEU CYS SER GLY TRP PRO ALA SER SER GLN VAL VAL ILE SEQRES 8 B 591 GLY PRO GLY ASP ARG PRO GLU THR GLY LEU GLN GLY GLN SEQRES 9 B 591 THR THR ILE GLU ASP VAL VAL SER GLY ARG SER LYS LEU SEQRES 10 B 591 PRO TYR HIS ALA GLY VAL ARG LEU VAL GLY ARG THR ASP SEQRES 11 B 591 ILE TRP ASN ARG GLY GLY ASN LEU GLN LEU SER TRP VAL SEQRES 12 B 591 ASP GLN CYS ALA TYR VAL SER THR PHE LYS GLN ALA GLY SEQRES 13 B 591 PRO ILE THR ALA ASN SER ARG SER ALA LEU PHE LEU ARG SEQRES 14 B 591 GLU PRO ALA GLY VAL ALA VAL ILE ASP VAL ARG ASP PRO SEQRES 15 B 591 ARG ALA PRO LYS PRO VAL ARG LEU LEU ARG ASP ARG GLY SEQRES 16 B 591 SER ILE ASP ALA VAL GLU THR MET HIS ALA ILE ALA ALA SEQRES 17 B 591 PRO GLY ARG LYS VAL LEU VAL ALA GLY ALA TYR SER GLY SEQRES 18 B 591 GLY ILE ALA GLY ARG GLY GLU GLU ASP ALA ALA TRP LEU SEQRES 19 B 591 SER ILE TYR ASP ALA SER ASN CYS LEU ASN PRO LYS LEU SEQRES 20 B 591 GLN SER GLU PHE LYS TRP PRO ALA ASN ILE HIS MET VAL SEQRES 21 B 591 THR ILE SER PRO ASN GLY ARG ARG VAL TYR GLY THR GLU SEQRES 22 B 591 VAL VAL PRO GLY LEU GLY SER GLY LYS GLY GLY LEU HIS SEQRES 23 B 591 VAL LEU ASP ILE SER ASP MET LYS ARG PRO ARG TYR LEU SEQRES 24 B 591 GLY ARG PHE GLY VAL THR ARG PRO ASN GLY LEU THR ALA SEQRES 25 B 591 GLY PHE THR PRO HIS GLU VAL SER ILE SER HIS ASP GLU SEQRES 26 B 591 ARG ARG ILE TYR ALA ALA VAL LEU ALA SER GLU THR GLY SEQRES 27 B 591 ASP VAL PRO VAL GLY ALA SER ILE LEU ALA SER ASP GLY SEQRES 28 B 591 ASP VAL PRO VAL GLU ASN GLY SER VAL TYR ILE LEU ASP SEQRES 29 B 591 ASN SER ASP ILE VAL ASP GLY ARG SER GLN PRO LYS MET SEQRES 30 B 591 ARG LEU VAL GLY GLU ALA LYS GLN GLY GLY PHE HIS SER SEQRES 31 B 591 VAL VAL PRO ALA SER ILE ASN GLY VAL PRO HIS LEU VAL SEQRES 32 B 591 GLY ALA ALA GLU LEU GLY ALA CYS PRO GLY THR TRP PRO SEQRES 33 B 591 ARG ILE ILE ASN ILE ALA ASP GLU LYS ASN PRO LYS ILE SEQRES 34 B 591 VAL GLY GLU PHE LYS LEU GLN MET ASN ILE LYS GLU ASN SEQRES 35 B 591 CYS ASP ALA ILE ARG PHE THR PRO ARG LYS GLU ASP PRO SEQRES 36 B 591 TYR ALA SER PHE ILE PRO ILE PRO ASP ILE THR ALA ARG SEQRES 37 B 591 LEU GLY ALA VAL GLY SER HIS PHE ASN ASP VAL ASP ASP SEQRES 38 B 591 ALA ARG ASN THR ARG LEU GLY LEU PHE PRO PHE PHE ALA SEQRES 39 B 591 GLY GLY VAL ARG ILE VAL ASP LEU ARG ASP PRO THR LYS SEQRES 40 B 591 PRO VAL GLU VAL GLY TYR TYR LYS PRO GLY ALA ASN PRO SEQRES 41 B 591 ASP THR PRO LEU SER GLY ASN GLY LEU ASN TRP THR GLY SEQRES 42 B 591 LEU ASN ASP GLN VAL THR ASP GLY CYS MET SER HIS VAL SEQRES 43 B 591 ARG TYR VAL PRO GLU SER GLY HIS ILE TRP PHE ALA CYS SEQRES 44 B 591 VAL THR THR GLY PHE HIS VAL VAL GLU LEU ASN PRO ASP SEQRES 45 B 591 LEU ARG ALA ARG LEU GLY PHE PRO THR VAL LYS LEU GLU SEQRES 46 B 591 HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *952(H2 O) HELIX 1 AA1 THR A 106 GLY A 113 1 8 HELIX 2 AA2 ARG A 114 LEU A 117 5 4 HELIX 3 AA3 ALA A 160 LEU A 168 5 9 HELIX 4 AA4 GLY A 227 ALA A 231 5 5 HELIX 5 AA5 GLY A 277 GLY A 281 5 5 HELIX 6 AA6 ASN A 365 ASP A 370 1 6 HELIX 7 AA7 LEU A 435 ASN A 438 5 4 HELIX 8 AA8 ILE A 439 ILE A 446 1 8 HELIX 9 AA9 PRO A 450 ASP A 454 5 5 HELIX 10 AB1 ASP A 464 ARG A 468 5 5 HELIX 11 AB2 PHE A 493 GLY A 495 5 3 HELIX 12 AB3 ASN A 570 LEU A 577 1 8 HELIX 13 AB4 THR B 106 GLY B 113 1 8 HELIX 14 AB5 ARG B 114 LEU B 117 5 4 HELIX 15 AB6 ALA B 160 LEU B 168 5 9 HELIX 16 AB7 GLY B 227 ALA B 231 5 5 HELIX 17 AB8 GLY B 277 GLY B 281 5 5 HELIX 18 AB9 ASN B 365 ASP B 370 1 6 HELIX 19 AC1 LEU B 435 ASN B 438 5 4 HELIX 20 AC2 ILE B 439 ILE B 446 1 8 HELIX 21 AC3 PRO B 450 ASP B 454 5 5 HELIX 22 AC4 ASP B 464 ARG B 468 5 5 HELIX 23 AC5 PHE B 493 GLY B 495 5 3 HELIX 24 AC6 ASN B 570 GLY B 578 1 9 SHEET 1 AA1 5 TYR A 119 ALA A 121 0 SHEET 2 AA1 5 VAL A 509 LYS A 515 -1 O LYS A 515 N TYR A 119 SHEET 3 AA1 5 VAL A 497 ASP A 501 -1 N ASP A 501 O VAL A 509 SHEET 4 AA1 5 LEU A 487 PRO A 491 -1 N GLY A 488 O VAL A 500 SHEET 5 AA1 5 ASP A 478 VAL A 479 -1 N ASP A 478 O LEU A 489 SHEET 1 AA2 4 VAL A 123 THR A 129 0 SHEET 2 AA2 4 GLY A 563 LEU A 569 -1 O VAL A 566 N GLY A 127 SHEET 3 AA2 4 HIS A 554 CYS A 559 -1 N PHE A 557 O HIS A 565 SHEET 4 AA2 4 ARG A 547 TYR A 548 -1 N ARG A 547 O TRP A 556 SHEET 1 AA3 4 ASN A 137 VAL A 143 0 SHEET 2 AA3 4 CYS A 146 THR A 151 -1 O TYR A 148 N SER A 141 SHEET 3 AA3 4 VAL A 174 ASP A 178 -1 O ILE A 177 N ALA A 147 SHEET 4 AA3 4 LYS A 186 LEU A 191 -1 O LYS A 186 N ASP A 178 SHEET 1 AA4 4 MET A 203 ALA A 208 0 SHEET 2 AA4 4 ARG A 211 GLY A 217 -1 O ARG A 211 N ALA A 208 SHEET 3 AA4 4 ALA A 232 ASP A 238 -1 O SER A 235 N ALA A 216 SHEET 4 AA4 4 LYS A 246 TRP A 253 -1 O GLN A 248 N ILE A 236 SHEET 1 AA5 4 VAL A 260 ILE A 262 0 SHEET 2 AA5 4 ARG A 268 GLU A 273 -1 O TYR A 270 N THR A 261 SHEET 3 AA5 4 GLY A 284 ASP A 289 -1 O HIS A 286 N GLY A 271 SHEET 4 AA5 4 ARG A 297 PHE A 302 -1 O ARG A 297 N ASP A 289 SHEET 1 AA6 2 VAL A 304 THR A 305 0 SHEET 2 AA6 2 THR A 311 ALA A 312 -1 O ALA A 312 N VAL A 304 SHEET 1 AA7 4 PHE A 314 ILE A 321 0 SHEET 2 AA7 4 ARG A 327 SER A 335 -1 O ALA A 331 N HIS A 317 SHEET 3 AA7 4 SER A 359 ASP A 364 -1 O LEU A 363 N ILE A 328 SHEET 4 AA7 4 ARG A 378 LYS A 384 -1 O ARG A 378 N ASP A 364 SHEET 1 AA8 4 SER A 390 ILE A 396 0 SHEET 2 AA8 4 VAL A 399 ALA A 405 -1 O HIS A 401 N ALA A 394 SHEET 3 AA8 4 ARG A 417 ASN A 420 -1 O ILE A 419 N LEU A 402 SHEET 4 AA8 4 LYS A 428 GLU A 432 -1 O GLY A 431 N ILE A 418 SHEET 1 AA9 5 TYR B 119 ALA B 121 0 SHEET 2 AA9 5 VAL B 509 LYS B 515 -1 O LYS B 515 N TYR B 119 SHEET 3 AA9 5 VAL B 497 ASP B 501 -1 N ASP B 501 O VAL B 509 SHEET 4 AA9 5 LEU B 487 PRO B 491 -1 N PHE B 490 O ARG B 498 SHEET 5 AA9 5 ASP B 478 VAL B 479 -1 N ASP B 478 O LEU B 489 SHEET 1 AB1 4 VAL B 123 THR B 129 0 SHEET 2 AB1 4 GLY B 563 LEU B 569 -1 O VAL B 566 N VAL B 126 SHEET 3 AB1 4 HIS B 554 CYS B 559 -1 N PHE B 557 O HIS B 565 SHEET 4 AB1 4 ARG B 547 TYR B 548 -1 N ARG B 547 O TRP B 556 SHEET 1 AB2 4 ASN B 137 VAL B 143 0 SHEET 2 AB2 4 CYS B 146 THR B 151 -1 O TYR B 148 N SER B 141 SHEET 3 AB2 4 VAL B 174 ASP B 178 -1 O ILE B 177 N ALA B 147 SHEET 4 AB2 4 LYS B 186 LEU B 191 -1 O LYS B 186 N ASP B 178 SHEET 1 AB3 4 MET B 203 ALA B 208 0 SHEET 2 AB3 4 ARG B 211 GLY B 217 -1 O ARG B 211 N ALA B 208 SHEET 3 AB3 4 ALA B 232 ASP B 238 -1 O SER B 235 N ALA B 216 SHEET 4 AB3 4 LYS B 246 TRP B 253 -1 O GLN B 248 N ILE B 236 SHEET 1 AB4 4 VAL B 260 ILE B 262 0 SHEET 2 AB4 4 ARG B 268 GLU B 273 -1 O TYR B 270 N THR B 261 SHEET 3 AB4 4 GLY B 284 ASP B 289 -1 O HIS B 286 N GLY B 271 SHEET 4 AB4 4 ARG B 297 PHE B 302 -1 O ARG B 297 N ASP B 289 SHEET 1 AB5 2 VAL B 304 THR B 305 0 SHEET 2 AB5 2 THR B 311 ALA B 312 -1 O ALA B 312 N VAL B 304 SHEET 1 AB6 4 PHE B 314 ILE B 321 0 SHEET 2 AB6 4 ARG B 327 SER B 335 -1 O ALA B 331 N HIS B 317 SHEET 3 AB6 4 SER B 359 ASP B 364 -1 O LEU B 363 N ILE B 328 SHEET 4 AB6 4 ARG B 378 LYS B 384 -1 O ARG B 378 N ASP B 364 SHEET 1 AB7 4 SER B 390 ILE B 396 0 SHEET 2 AB7 4 VAL B 399 ALA B 405 -1 O HIS B 401 N ALA B 394 SHEET 3 AB7 4 ARG B 417 ASN B 420 -1 O ILE B 419 N LEU B 402 SHEET 4 AB7 4 LYS B 428 GLU B 432 -1 O LYS B 428 N ASN B 420 SSBOND 1 CYS A 146 CYS A 242 1555 1555 2.04 SSBOND 2 CYS A 411 CYS A 443 1555 1555 2.03 SSBOND 3 CYS A 542 CYS A 559 1555 1555 2.06 SSBOND 4 CYS B 146 CYS B 242 1555 1555 2.04 SSBOND 5 CYS B 411 CYS B 443 1555 1555 2.04 SSBOND 6 CYS B 542 CYS B 559 1555 1555 2.06 CISPEP 1 GLU A 170 PRO A 171 0 10.55 CISPEP 2 VAL A 275 PRO A 276 0 6.64 CISPEP 3 ASP A 352 VAL A 353 0 13.01 CISPEP 4 PRO A 375 LYS A 376 0 -17.67 CISPEP 5 CYS A 411 PRO A 412 0 13.63 CISPEP 6 PRO B 93 GLY B 94 0 -11.87 CISPEP 7 GLU B 170 PRO B 171 0 9.97 CISPEP 8 VAL B 275 PRO B 276 0 3.27 CISPEP 9 GLY B 351 ASP B 352 0 17.12 CISPEP 10 CYS B 411 PRO B 412 0 14.28 CRYST1 88.309 93.923 112.494 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008889 0.00000