HEADER TRANSFERASE 08-MAR-16 5IOR TITLE FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE IN COMPLEX WITH FAD AND 2'- TITLE 2 DEOXYURIDINE-5'-MONOSULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TSASE; COMPND 5 EC: 2.1.1.148; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: THYX, THY1, TM_0449; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAD-DEPENDENT, NUCLEOTIDE BIOSYNTHESIS, REDUCTIVE METHYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.BERNARD,F.W.STULL,J.L.SMITH REVDAT 5 27-SEP-23 5IOR 1 REMARK REVDAT 4 27-NOV-19 5IOR 1 REMARK REVDAT 3 20-SEP-17 5IOR 1 JRNL REMARK REVDAT 2 22-JUN-16 5IOR 1 JRNL REVDAT 1 08-JUN-16 5IOR 0 JRNL AUTH F.W.STULL,S.M.BERNARD,A.SAPRA,J.L.SMITH,E.R.ZUIDERWEG, JRNL AUTH 2 B.A.PALFEY JRNL TITL DEPROTONATIONS IN THE REACTION OF FLAVIN-DEPENDENT JRNL TITL 2 THYMIDYLATE SYNTHASE. JRNL REF BIOCHEMISTRY V. 55 3261 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 27214228 JRNL DOI 10.1021/ACS.BIOCHEM.6B00510 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.761 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1988 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1844 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2711 ; 1.342 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4234 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 6.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;31.313 ;22.396 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;13.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2195 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 877 ; 1.120 ; 2.205 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 877 ; 1.120 ; 2.205 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 1.742 ; 3.293 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1097 ; 1.741 ; 3.293 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1111 ; 1.747 ; 2.530 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1111 ; 1.734 ; 2.530 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1614 ; 2.844 ; 3.718 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2537 ; 5.041 ;21.758 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2510 ; 4.986 ;21.607 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6003 19.2588 -21.6735 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.0496 REMARK 3 T33: 0.0223 T12: 0.0309 REMARK 3 T13: -0.0091 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 5.2276 L22: 5.7109 REMARK 3 L33: 6.1233 L12: -0.9933 REMARK 3 L13: 1.8969 L23: 4.7909 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: -0.0251 S13: -0.0511 REMARK 3 S21: -0.4159 S22: -0.0623 S23: -0.0688 REMARK 3 S31: -0.0048 S32: 0.0199 S33: -0.0926 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9882 12.1588 -18.6321 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.1054 REMARK 3 T33: 0.0439 T12: -0.0148 REMARK 3 T13: -0.0021 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.5998 L22: 3.5876 REMARK 3 L33: 0.6196 L12: 2.5735 REMARK 3 L13: 0.2551 L23: 0.9495 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: 0.3431 S13: -0.1018 REMARK 3 S21: -0.3440 S22: 0.2797 S23: -0.1342 REMARK 3 S31: -0.0925 S32: 0.0535 S33: -0.0566 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5681 3.2794 -16.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.1552 REMARK 3 T33: 0.1232 T12: -0.0100 REMARK 3 T13: -0.0221 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.7133 L22: 7.0278 REMARK 3 L33: 2.2409 L12: -0.6574 REMARK 3 L13: 1.3447 L23: 1.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.2428 S13: 0.1946 REMARK 3 S21: -0.3814 S22: -0.0469 S23: 0.4277 REMARK 3 S31: -0.0978 S32: -0.1693 S33: 0.0179 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9213 16.2387 -8.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.0414 REMARK 3 T33: 0.0342 T12: 0.0006 REMARK 3 T13: 0.0091 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.1295 L22: 0.7845 REMARK 3 L33: 0.6217 L12: 0.5198 REMARK 3 L13: 0.0169 L23: -0.0151 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.0210 S13: 0.1308 REMARK 3 S21: -0.0552 S22: 0.0104 S23: -0.0143 REMARK 3 S31: -0.1262 S32: 0.0494 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4918 27.7291 -4.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.0784 REMARK 3 T33: 0.1093 T12: -0.0311 REMARK 3 T13: 0.0153 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.3570 L22: 6.4909 REMARK 3 L33: 0.9137 L12: -5.1672 REMARK 3 L13: -0.6995 L23: 1.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.1360 S12: 0.0537 S13: 0.3516 REMARK 3 S21: -0.3174 S22: -0.0285 S23: -0.3225 REMARK 3 S31: -0.2445 S32: 0.0327 S33: -0.1075 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2138 16.5511 -7.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0147 REMARK 3 T33: 0.0270 T12: 0.0031 REMARK 3 T13: 0.0058 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.1005 L22: 0.4307 REMARK 3 L33: 0.3082 L12: 0.3712 REMARK 3 L13: 0.1389 L23: 0.2321 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0262 S13: 0.0736 REMARK 3 S21: -0.0579 S22: 0.0203 S23: 0.0367 REMARK 3 S31: -0.0589 S32: 0.0020 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7000 17.3754 -14.7031 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0624 REMARK 3 T33: 0.1132 T12: 0.0083 REMARK 3 T13: -0.0438 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 3.0132 L22: 4.0238 REMARK 3 L33: 6.0195 L12: 0.3916 REMARK 3 L13: 0.0973 L23: 2.6353 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.0898 S13: 0.3165 REMARK 3 S21: -0.2677 S22: 0.0038 S23: 0.2062 REMARK 3 S31: -0.3368 S32: -0.0420 S33: 0.0463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 80.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 4K, 100 MM NACL, 100 MM NA/K REMARK 280 PHOSPHATE, PH 6.6, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.83950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.93200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.96600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.83950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.89800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.89800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.83950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.96600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 54.83950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.93200 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.83950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.93200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.83950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.89800 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 29.96600 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.83950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 29.96600 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.89800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.83950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.83950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.93200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 35 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ASP A 37 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 96 OD1 ASP A 127 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -149.75 54.62 REMARK 500 ASN A 19 -164.15 -161.81 REMARK 500 ALA A 82 173.51 178.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RBF A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IOQ RELATED DB: PDB REMARK 900 RELATED ID: 5IOS RELATED DB: PDB REMARK 900 RELATED ID: 5IOT RELATED DB: PDB DBREF 5IOR A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 5IOR MET A -11 UNP Q9WYT0 INITIATING METHIONINE SEQADV 5IOR GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 5IOR HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET FAD A 301 53 HET DUS A 302 20 HET RBF A 303 27 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM DUS 2'-DEOXY-5'-O-SULFOURIDINE HETNAM RBF RIBOFLAVIN HETSYN DUS 2'-DEOXYURIDINE-5'-MONOSULFATE HETSYN RBF RIBOFLAVINE; VITAMIN B2 FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 DUS C9 H12 N2 O8 S FORMUL 4 RBF C17 H20 N4 O6 FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 ASN A 19 VAL A 29 1 11 HELIX 2 AA2 ASP A 37 HIS A 51 1 15 HELIX 3 AA3 GLU A 54 HIS A 59 5 6 HELIX 4 AA4 ILE A 70 PHE A 77 1 8 HELIX 5 AA5 SER A 102 GLU A 107 5 6 HELIX 6 AA6 PRO A 114 SER A 139 1 26 HELIX 7 AA7 PRO A 142 ARG A 147 1 6 HELIX 8 AA8 ILE A 148 LEU A 150 5 3 HELIX 9 AA9 ALA A 164 ALA A 175 1 12 HELIX 10 AB1 GLN A 180 CYS A 198 1 19 HELIX 11 AB2 CYS A 198 ALA A 209 1 12 SHEET 1 AA1 5 ILE A 3 ILE A 5 0 SHEET 2 AA1 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 AA1 5 VAL A 61 PRO A 69 -1 O VAL A 61 N MET A 17 SHEET 4 AA1 5 TYR A 155 ASN A 163 -1 O PHE A 158 N VAL A 66 SHEET 5 AA1 5 SER A 83 GLU A 86 -1 N SER A 83 O THR A 161 SITE 1 AC1 27 THR A 55 GLU A 58 ARG A 78 HIS A 79 SITE 2 AC1 27 ARG A 80 ILE A 81 ASN A 85 GLU A 86 SITE 3 AC1 27 SER A 88 TYR A 91 ASN A 163 ARG A 165 SITE 4 AC1 27 ASN A 169 LEU A 173 ARG A 174 HIS A 178 SITE 5 AC1 27 DUS A 302 RBF A 303 HOH A 406 HOH A 409 SITE 6 AC1 27 HOH A 414 HOH A 423 HOH A 464 HOH A 467 SITE 7 AC1 27 HOH A 474 HOH A 475 HOH A 479 SITE 1 AC2 14 ARG A 74 GLN A 75 ARG A 78 GLU A 86 SITE 2 AC2 14 LEU A 87 SER A 88 GLY A 89 ARG A 90 SITE 3 AC2 14 ARG A 147 ARG A 174 FAD A 301 HOH A 417 SITE 4 AC2 14 HOH A 455 HOH A 456 SITE 1 AC3 7 ARG A 40 TYR A 47 HIS A 53 THR A 55 SITE 2 AC3 7 ASN A 85 TYR A 91 FAD A 301 CRYST1 109.679 109.679 119.864 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008343 0.00000