HEADER VIRAL PROTEIN/RNA 09-MAR-16 5IP2 TITLE TOMATO SPOTTED WILT TOSPOVIRUS NUCLEOCAPSID PROTEIN-SSRNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: B, C, A; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-D(P*UP*UP*U)-3'); COMPND 13 CHAIN: F, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO SPOTTED WILT VIRUS; SOURCE 3 ORGANISM_COMMON: TSWV; SOURCE 4 ORGANISM_TAXID: 11613; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 (DE3) PRARE2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS VIRAL PROTEIN, NUCLEOCAPSID PROTEIN, BUNYAVIRUS, TOSPOVIRUS, VIRAL KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.KOMODA,M.NARITA,K.YAMASHITA,I.TANAKA,M.YAO REVDAT 5 08-NOV-23 5IP2 1 REMARK REVDAT 4 21-MAR-18 5IP2 1 JRNL REVDAT 3 11-OCT-17 5IP2 1 REMARK REVDAT 2 14-JUN-17 5IP2 1 REMARK ATOM ANISOU REVDAT 1 22-MAR-17 5IP2 0 JRNL AUTH K.KOMODA,M.NARITA,K.YAMASHITA,I.TANAKA,M.YAO JRNL TITL ASYMMETRIC TRIMERIC RING STRUCTURE OF THE NUCLEOCAPSID JRNL TITL 2 PROTEIN OF TOSPOVIRUS. JRNL REF J. VIROL. V. 91 2017 JRNL REFN ESSN 1098-5514 JRNL PMID 28768868 JRNL DOI 10.1128/JVI.01002-17 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1426 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.4725 - 3.2987 0.97 1628 126 0.3857 0.4220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 134.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 139.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5739 REMARK 3 ANGLE : 0.531 7726 REMARK 3 CHIRALITY : 0.020 929 REMARK 3 PLANARITY : 0.002 919 REMARK 3 DIHEDRAL : 10.804 2236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.6852 49.0713 57.7466 REMARK 3 T TENSOR REMARK 3 T11: 1.6507 T22: 1.2503 REMARK 3 T33: 1.6053 T12: -0.0448 REMARK 3 T13: 0.1304 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.8907 L22: -0.6236 REMARK 3 L33: 2.5310 L12: 0.3134 REMARK 3 L13: 0.6653 L23: 0.9720 REMARK 3 S TENSOR REMARK 3 S11: 0.4003 S12: -0.5810 S13: 0.3181 REMARK 3 S21: 0.2330 S22: -0.0596 S23: 0.2885 REMARK 3 S31: 0.6630 S32: 0.2235 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 15.4822 48.2472 25.5709 REMARK 3 T TENSOR REMARK 3 T11: 1.0906 T22: 1.0869 REMARK 3 T33: 1.1438 T12: -0.1092 REMARK 3 T13: 0.0006 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 0.6396 L22: 1.4566 REMARK 3 L33: 3.7262 L12: 1.0735 REMARK 3 L13: -0.4140 L23: 1.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: 0.3923 S13: -0.0022 REMARK 3 S21: 0.3222 S22: -0.0095 S23: 0.3622 REMARK 3 S31: 0.7392 S32: 0.1729 S33: -0.0227 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -8.9010 64.7094 40.2867 REMARK 3 T TENSOR REMARK 3 T11: 1.1576 T22: 1.2303 REMARK 3 T33: 1.4456 T12: 0.0546 REMARK 3 T13: -0.0326 T23: -0.0924 REMARK 3 L TENSOR REMARK 3 L11: 1.4344 L22: 2.4342 REMARK 3 L33: 0.9034 L12: -0.5241 REMARK 3 L13: 0.3307 L23: 0.5744 REMARK 3 S TENSOR REMARK 3 S11: -0.1466 S12: 0.0397 S13: 0.3034 REMARK 3 S21: 0.2909 S22: -0.2120 S23: -0.1762 REMARK 3 S31: -0.3723 S32: -0.3928 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): 11.7292 48.7965 33.2027 REMARK 3 T TENSOR REMARK 3 T11: 2.3292 T22: 2.0920 REMARK 3 T33: 1.9798 T12: -2.0026 REMARK 3 T13: 1.1660 T23: 0.2820 REMARK 3 L TENSOR REMARK 3 L11: 0.3790 L22: 0.0831 REMARK 3 L33: 0.6982 L12: 0.1786 REMARK 3 L13: 0.5361 L23: 0.2215 REMARK 3 S TENSOR REMARK 3 S11: -0.7406 S12: -0.6930 S13: -0.1137 REMARK 3 S21: 0.7834 S22: -0.7561 S23: 0.4613 REMARK 3 S31: 0.3366 S32: -0.8082 S33: -2.0780 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -4.773 55.737 31.809 REMARK 3 T TENSOR REMARK 3 T11: 1.7359 T22: 1.9269 REMARK 3 T33: 3.4974 T12: 0.0698 REMARK 3 T13: -1.0705 T23: -0.6910 REMARK 3 L TENSOR REMARK 3 L11: 0.1139 L22: 0.0002 REMARK 3 L33: 0.0247 L12: -0.0108 REMARK 3 L13: -0.0161 L23: -0.0173 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: -0.3718 S13: 0.0826 REMARK 3 S21: -0.9280 S22: -0.2780 S23: 0.8034 REMARK 3 S31: -0.0401 S32: -1.1851 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 9.546 47.972 50.277 REMARK 3 T TENSOR REMARK 3 T11: 4.4757 T22: 1.8349 REMARK 3 T33: 2.4200 T12: -0.0170 REMARK 3 T13: 0.1684 T23: -0.5844 REMARK 3 L TENSOR REMARK 3 L11: 0.0290 L22: 0.0076 REMARK 3 L33: 0.0654 L12: 0.0079 REMARK 3 L13: 0.0519 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: -1.3738 S12: 0.1448 S13: -0.4761 REMARK 3 S21: -0.7073 S22: -0.5512 S23: 0.1768 REMARK 3 S31: -0.0480 S32: 0.3895 S33: -0.0019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 2:23 OR RESID 34:223) REMARK 3 SELECTION : CHAIN B AND (RESID 2:23 OR RESID 34:223) REMARK 3 ATOM PAIRS NUMBER : 3140 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESID 2:23 OR RESID 34:223) REMARK 3 SELECTION : CHAIN C AND (RESID 2:23 OR RESID 34:223) REMARK 3 ATOM PAIRS NUMBER : 3140 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IP2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12585 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4YBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 25% (W/V) PEG 1000, REMARK 280 0.1M GLYCINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.36600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, E, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -20 REMARK 465 ASN B -19 REMARK 465 HIS B -18 REMARK 465 LYS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 24 REMARK 465 GLU B 25 REMARK 465 ASN B 26 REMARK 465 GLN B 27 REMARK 465 ASN B 28 REMARK 465 LEU B 29 REMARK 465 VAL B 30 REMARK 465 ALA B 31 REMARK 465 PHE B 32 REMARK 465 PRO B 224 REMARK 465 ASN B 225 REMARK 465 ALA B 226 REMARK 465 LYS B 227 REMARK 465 GLY B 228 REMARK 465 LYS B 249 REMARK 465 LYS B 250 REMARK 465 GLN B 251 REMARK 465 ALA B 252 REMARK 465 LYS B 253 REMARK 465 LEU B 254 REMARK 465 ALA B 255 REMARK 465 GLU B 256 REMARK 465 LEU B 257 REMARK 465 ALA B 258 REMARK 465 MET C -20 REMARK 465 ASN C -19 REMARK 465 HIS C -18 REMARK 465 LYS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 GLU C -7 REMARK 465 ASN C -6 REMARK 465 LEU C -5 REMARK 465 TYR C -4 REMARK 465 PHE C -3 REMARK 465 GLN C -2 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLU C 24 REMARK 465 GLU C 25 REMARK 465 ASN C 26 REMARK 465 GLN C 27 REMARK 465 ASN C 28 REMARK 465 LEU C 29 REMARK 465 VAL C 30 REMARK 465 ALA C 31 REMARK 465 PHE C 32 REMARK 465 PRO C 224 REMARK 465 ASN C 225 REMARK 465 ALA C 226 REMARK 465 LYS C 227 REMARK 465 GLY C 228 REMARK 465 MET C 245 REMARK 465 PHE C 246 REMARK 465 GLY C 247 REMARK 465 VAL C 248 REMARK 465 LYS C 249 REMARK 465 LYS C 250 REMARK 465 GLN C 251 REMARK 465 ALA C 252 REMARK 465 LYS C 253 REMARK 465 LEU C 254 REMARK 465 ALA C 255 REMARK 465 GLU C 256 REMARK 465 LEU C 257 REMARK 465 ALA C 258 REMARK 465 MET A -20 REMARK 465 ASN A -19 REMARK 465 HIS A -18 REMARK 465 LYS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 GLN A 27 REMARK 465 ASN A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 ALA A 31 REMARK 465 PHE A 32 REMARK 465 PRO A 224 REMARK 465 ASN A 225 REMARK 465 ALA A 226 REMARK 465 LYS A 227 REMARK 465 GLY A 228 REMARK 465 MET A 245 REMARK 465 PHE A 246 REMARK 465 GLY A 247 REMARK 465 VAL A 248 REMARK 465 LYS A 249 REMARK 465 LYS A 250 REMARK 465 GLN A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 465 LEU A 254 REMARK 465 ALA A 255 REMARK 465 GLU A 256 REMARK 465 LEU A 257 REMARK 465 ALA A 258 REMARK 465 U E 6 REMARK 465 U E 7 REMARK 465 U E 8 REMARK 465 U E 9 REMARK 465 U E 10 REMARK 465 U E 11 REMARK 465 U E 12 REMARK 465 U E 13 REMARK 465 U E 14 REMARK 465 U E 15 REMARK 465 U E 16 REMARK 465 U E 17 REMARK 465 U E 18 REMARK 465 U E 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 17 OG SER A 111 2546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 71 98.84 -59.40 REMARK 500 ARG B 85 75.27 56.00 REMARK 500 ASP B 135 -70.64 -102.70 REMARK 500 SER B 158 -0.26 73.89 REMARK 500 ASP C 71 99.64 -59.41 REMARK 500 ARG C 85 75.38 56.61 REMARK 500 ASP C 135 -70.64 -102.28 REMARK 500 SER C 158 -0.12 73.31 REMARK 500 ASP A 71 99.26 -59.63 REMARK 500 ARG A 85 76.74 54.37 REMARK 500 ASP A 135 -72.41 -101.70 REMARK 500 SER A 158 -0.18 73.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YBW RELATED DB: PDB REMARK 900 RELATED ID: 4YBY RELATED DB: PDB REMARK 900 RELATED ID: 5IP1 RELATED DB: PDB REMARK 900 RELATED ID: 5IP3 RELATED DB: PDB DBREF 5IP2 B 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP2 C 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP2 A 1 258 UNP F4ZD19 F4ZD19_TSWV 1 258 DBREF 5IP2 E 1 19 PDB 5IP2 5IP2 1 19 DBREF 5IP2 F 1 3 PDB 5IP2 5IP2 1 3 DBREF 5IP2 D 1 3 PDB 5IP2 5IP2 1 3 SEQADV 5IP2 MET B -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN B -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LYS B -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER B -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER B -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY B -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLU B -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN B -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LEU B -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 TYR B -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 PHE B -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLN B -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY B -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS B 0 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 MET C -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN C -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LYS C -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER C -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER C -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY C -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLU C -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN C -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LEU C -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 TYR C -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 PHE C -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLN C -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY C -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS C 0 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 MET A -20 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN A -19 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -18 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LYS A -17 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -16 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -15 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -14 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -13 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -12 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A -11 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER A -10 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 SER A -9 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY A -8 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLU A -7 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 ASN A -6 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 LEU A -5 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 TYR A -4 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 PHE A -3 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLN A -2 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 GLY A -1 UNP F4ZD19 EXPRESSION TAG SEQADV 5IP2 HIS A 0 UNP F4ZD19 EXPRESSION TAG SEQRES 1 B 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 B 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 B 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 B 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 B 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 B 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 B 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 B 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 B 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 B 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 B 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 B 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 B 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 B 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 B 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 B 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 B 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 B 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 B 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 B 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 B 279 LYS LEU ALA GLU LEU ALA SEQRES 1 C 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 C 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 C 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 C 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 C 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 C 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 C 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 C 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 C 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 C 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 C 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 C 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 C 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 C 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 C 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 C 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 C 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 C 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 C 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 C 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 C 279 LYS LEU ALA GLU LEU ALA SEQRES 1 A 279 MET ASN HIS LYS HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 279 GLU ASN LEU TYR PHE GLN GLY HIS MET SER LYS VAL LYS SEQRES 3 A 279 LEU THR LYS GLU ASN ILE VAL ALA LEU LEU THR GLN GLY SEQRES 4 A 279 LYS ASP LEU GLU PHE GLU GLU ASN GLN ASN LEU VAL ALA SEQRES 5 A 279 PHE ASN PHE LYS THR PHE CYS LEU GLU ASN LEU ASP GLN SEQRES 6 A 279 ILE LYS LYS MET SER ILE ILE SER CYS LEU THR PHE LEU SEQRES 7 A 279 LYS ASN ARG GLN SER ILE MET LYS VAL ILE LYS GLN SER SEQRES 8 A 279 ASP PHE THR PHE GLY LYS ILE THR ILE LYS LYS THR SER SEQRES 9 A 279 ASP ARG ILE GLY ALA THR ASP MET THR PHE ARG ARG LEU SEQRES 10 A 279 ASP SER LEU ILE ARG VAL ARG LEU VAL GLU GLU THR GLY SEQRES 11 A 279 ASN SER GLU ASN LEU ASN THR ILE LYS SER LYS ILE ALA SEQRES 12 A 279 SER HIS PRO LEU ILE GLN ALA TYR GLY LEU PRO LEU ASP SEQRES 13 A 279 ASP ALA LYS SER VAL ARG LEU ALA ILE MET LEU GLY GLY SEQRES 14 A 279 SER LEU PRO LEU ILE ALA SER VAL ASP SER PHE GLU MET SEQRES 15 A 279 ILE SER VAL VAL LEU ALA ILE TYR GLN ASP ALA LYS TYR SEQRES 16 A 279 LYS ASP LEU GLY ILE ASP PRO LYS LYS TYR ASP THR LYS SEQRES 17 A 279 GLU ALA LEU GLY LYS VAL CYS THR VAL LEU LYS SER LYS SEQRES 18 A 279 ALA PHE GLU MET ASN GLU ASP GLN VAL LYS LYS GLY LYS SEQRES 19 A 279 GLU TYR ALA ALA ILE LEU SER SER SER ASN PRO ASN ALA SEQRES 20 A 279 LYS GLY SER VAL ALA MET GLU HIS TYR SER GLU THR LEU SEQRES 21 A 279 ASN LYS PHE TYR GLU MET PHE GLY VAL LYS LYS GLN ALA SEQRES 22 A 279 LYS LEU ALA GLU LEU ALA SEQRES 1 E 19 U U U U U U U U U U U U U SEQRES 2 E 19 U U U U U U SEQRES 1 F 3 U U U SEQRES 1 D 3 U U U HELIX 1 AA1 THR B 7 GLN B 17 1 11 HELIX 2 AA2 PHE B 34 LEU B 42 1 9 HELIX 3 AA3 ASP B 43 MET B 48 5 6 HELIX 4 AA4 SER B 49 ASN B 59 1 11 HELIX 5 AA5 ASN B 59 SER B 70 1 12 HELIX 6 AA6 THR B 92 GLU B 107 1 16 HELIX 7 AA7 ASN B 110 ALA B 122 1 13 HELIX 8 AA8 HIS B 124 GLY B 131 1 8 HELIX 9 AA9 ASP B 136 LEU B 146 1 11 HELIX 10 AB1 SER B 149 ALA B 154 1 6 HELIX 11 AB2 PHE B 159 LYS B 173 1 15 HELIX 12 AB3 ASP B 185 LYS B 200 1 16 HELIX 13 AB4 ASN B 205 SER B 221 1 17 HELIX 14 AB5 VAL B 230 GLU B 244 1 15 HELIX 15 AB6 THR C 7 GLN C 17 1 11 HELIX 16 AB7 PHE C 34 LYS C 46 1 13 HELIX 17 AB8 SER C 49 ASN C 59 1 11 HELIX 18 AB9 ASN C 59 LYS C 68 1 10 HELIX 19 AC1 THR C 92 GLU C 107 1 16 HELIX 20 AC2 ASN C 110 ALA C 122 1 13 HELIX 21 AC3 HIS C 124 GLY C 131 1 8 HELIX 22 AC4 ASP C 136 LEU C 146 1 11 HELIX 23 AC5 SER C 149 ALA C 154 1 6 HELIX 24 AC6 PHE C 159 LYS C 173 1 15 HELIX 25 AC7 ASP C 185 LYS C 200 1 16 HELIX 26 AC8 ASN C 205 SER C 221 1 17 HELIX 27 AC9 VAL C 230 TYR C 235 1 6 HELIX 28 AD1 TYR C 235 GLU C 244 1 10 HELIX 29 AD2 THR A 7 GLN A 17 1 11 HELIX 30 AD3 PHE A 34 LYS A 46 1 13 HELIX 31 AD4 SER A 49 ASN A 59 1 11 HELIX 32 AD5 ASN A 59 SER A 70 1 12 HELIX 33 AD6 THR A 92 GLU A 107 1 16 HELIX 34 AD7 ASN A 110 ALA A 122 1 13 HELIX 35 AD8 HIS A 124 GLY A 131 1 8 HELIX 36 AD9 ASP A 136 LEU A 146 1 11 HELIX 37 AE1 SER A 149 ALA A 154 1 6 HELIX 38 AE2 PHE A 159 LYS A 173 1 15 HELIX 39 AE3 ASP A 185 LYS A 200 1 16 HELIX 40 AE4 ASN A 205 SER A 221 1 17 HELIX 41 AE5 VAL A 230 TYR A 235 1 6 HELIX 42 AE6 TYR A 235 GLU A 244 1 10 SHEET 1 AA1 2 PHE B 72 PHE B 74 0 SHEET 2 AA1 2 ILE B 77 ILE B 79 -1 O ILE B 79 N PHE B 72 SHEET 1 AA2 2 PHE C 72 PHE C 74 0 SHEET 2 AA2 2 ILE C 77 ILE C 79 -1 O ILE C 79 N PHE C 72 SHEET 1 AA3 2 PHE A 72 PHE A 74 0 SHEET 2 AA3 2 ILE A 77 ILE A 79 -1 O ILE A 79 N PHE A 72 CRYST1 68.208 94.732 70.917 90.00 112.60 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014661 0.000000 0.006103 0.00000 SCALE2 0.000000 0.010556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015274 0.00000