data_5IP8 # _entry.id 5IP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5IP8 pdb_00005ip8 10.2210/pdb5ip8/pdb WWPDB D_1000219217 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-29 2 'Structure model' 1 1 2017-08-30 3 'Structure model' 1 2 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.value' 19 3 'Structure model' '_struct_conn.pdbx_dist_value' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5IP8 _pdbx_database_status.recvd_initial_deposition_date 2016-03-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Souter, J.E.' 1 'Hall, J.P.' 2 'Cardin, C.J.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Sequence specific binding of light activated Ru-polypyridyls' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Souter, J.E.' 2 ? primary 'Gurung, S.P.' 3 ? primary 'Cardin, C.J.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*GP*GP*AP*GP*CP*CP*GP*G)-3') ; 3071.005 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*CP*GP*GP*CP*TP*CP*CP*GP*G)-3') ; 3021.968 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 2 ? ? ? ? 5 water nat water 18.015 69 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DG)(DA)(DG)(DC)(DC)(DG)(DG)' CCGGAGCCGG B ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DG)(DC)(DT)(DC)(DC)(DG)(DG)' CCGGCTCCGG A ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'BARIUM ION' BA 4 'Ru(tap)2(dppz) complex' RKL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 DT n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 10 'synthetic construct' ? 32630 ? 2 1 sample 1 10 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DC 2 2 2 DC DC B . n A 1 3 DG 3 3 3 DG DG B . n A 1 4 DG 4 4 4 DG DG B . n A 1 5 DA 5 5 5 DA DA B . n A 1 6 DG 6 6 6 DG DG B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DC 8 8 8 DC DC B . n A 1 9 DG 9 9 9 DG DG B . n A 1 10 DG 10 10 10 DG DG B . n B 2 1 DC 1 1 1 DC DC A . n B 2 2 DC 2 2 2 DC DC A . n B 2 3 DG 3 3 3 DG DG A . n B 2 4 DG 4 4 4 DG DG A . n B 2 5 DC 5 5 5 DC DC A . n B 2 6 DT 6 6 6 DT DT A . n B 2 7 DC 7 7 7 DC DC A . n B 2 8 DC 8 8 8 DC DC A . n B 2 9 DG 9 9 9 DG DG A . n B 2 10 DG 10 10 10 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BA 1 101 1 BA BA B . D 4 RKL 1 102 3 RKL RKL B . E 4 RKL 1 103 4 RKL RKL B . F 3 BA 1 101 2 BA BA A . G 5 HOH 1 201 66 HOH HOH B . G 5 HOH 2 202 95 HOH HOH B . G 5 HOH 3 203 21 HOH HOH B . G 5 HOH 4 204 33 HOH HOH B . G 5 HOH 5 205 16 HOH HOH B . G 5 HOH 6 206 65 HOH HOH B . G 5 HOH 7 207 11 HOH HOH B . G 5 HOH 8 208 91 HOH HOH B . G 5 HOH 9 209 56 HOH HOH B . G 5 HOH 10 210 82 HOH HOH B . G 5 HOH 11 211 84 HOH HOH B . G 5 HOH 12 212 53 HOH HOH B . G 5 HOH 13 213 73 HOH HOH B . G 5 HOH 14 214 17 HOH HOH B . G 5 HOH 15 215 14 HOH HOH B . G 5 HOH 16 216 39 HOH HOH B . G 5 HOH 17 217 34 HOH HOH B . G 5 HOH 18 218 60 HOH HOH B . G 5 HOH 19 219 7 HOH HOH B . G 5 HOH 20 220 78 HOH HOH B . G 5 HOH 21 221 68 HOH HOH B . G 5 HOH 22 222 32 HOH HOH B . G 5 HOH 23 223 64 HOH HOH B . G 5 HOH 24 224 24 HOH HOH B . G 5 HOH 25 225 72 HOH HOH B . G 5 HOH 26 226 76 HOH HOH B . G 5 HOH 27 227 37 HOH HOH B . G 5 HOH 28 228 18 HOH HOH B . G 5 HOH 29 229 38 HOH HOH B . G 5 HOH 30 230 1 HOH HOH B . G 5 HOH 31 231 80 HOH HOH B . G 5 HOH 32 232 85 HOH HOH B . G 5 HOH 33 233 13 HOH HOH B . G 5 HOH 34 234 93 HOH HOH B . G 5 HOH 35 235 94 HOH HOH B . G 5 HOH 36 236 59 HOH HOH B . G 5 HOH 37 237 8 HOH HOH B . G 5 HOH 38 238 44 HOH HOH B . G 5 HOH 39 239 42 HOH HOH B . G 5 HOH 40 240 88 HOH HOH B . H 5 HOH 1 201 54 HOH HOH A . H 5 HOH 2 202 19 HOH HOH A . H 5 HOH 3 203 9 HOH HOH A . H 5 HOH 4 204 41 HOH HOH A . H 5 HOH 5 205 23 HOH HOH A . H 5 HOH 6 206 43 HOH HOH A . H 5 HOH 7 207 5 HOH HOH A . H 5 HOH 8 208 47 HOH HOH A . H 5 HOH 9 209 20 HOH HOH A . H 5 HOH 10 210 4 HOH HOH A . H 5 HOH 11 211 45 HOH HOH A . H 5 HOH 12 212 92 HOH HOH A . H 5 HOH 13 213 22 HOH HOH A . H 5 HOH 14 214 50 HOH HOH A . H 5 HOH 15 215 49 HOH HOH A . H 5 HOH 16 216 58 HOH HOH A . H 5 HOH 17 217 61 HOH HOH A . H 5 HOH 18 218 3 HOH HOH A . H 5 HOH 19 219 86 HOH HOH A . H 5 HOH 20 220 83 HOH HOH A . H 5 HOH 21 221 89 HOH HOH A . H 5 HOH 22 222 10 HOH HOH A . H 5 HOH 23 223 12 HOH HOH A . H 5 HOH 24 224 87 HOH HOH A . H 5 HOH 25 225 69 HOH HOH A . H 5 HOH 26 226 28 HOH HOH A . H 5 HOH 27 227 90 HOH HOH A . H 5 HOH 28 228 63 HOH HOH A . H 5 HOH 29 229 25 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5IP8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 47.450 _cell.length_a_esd ? _cell.length_b 47.450 _cell.length_b_esd ? _cell.length_c 35.130 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5IP8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;6 uL of a solution containing 10% v/v MPD, 0.04M Sodium Cacodylate, 0.012M Spermine, 0.08M KCl, 0.02M BaCl2. 1uL 1mM DNA, 1uL 4mM rac-RuTAP2dppz ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2008-12-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'dual Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5IP8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.76 _reflns.d_resolution_low 23.73 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7868 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs 0.024 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 29.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.81 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.00 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.728 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.23 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.47 _refine.B_iso_max ? _refine.B_iso_mean 45.579 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5IP8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.76 _refine.ls_d_res_low 23.73 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7434 _refine.ls_number_reflns_R_free 420 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.70 _refine.ls_percent_reflns_R_free 5.3 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18949 _refine.ls_R_factor_R_free 0.21957 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18791 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.113 _refine.pdbx_overall_ESU_R_Free 0.110 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.559 _refine.overall_SU_ML 0.080 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 104 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 577 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 23.73 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.013 580 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 267 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.692 1.595 912 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.661 3.000 613 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.106 0.200 60 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.031 0.020 350 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 156 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.086 4.584 580 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.077 4.583 579 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 6.739 6.834 913 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.133 47.976 1296 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.084 48.004 1278 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.760 _refine_ls_shell.d_res_low 1.805 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_R_work 547 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.319 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.271 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5IP8 _struct.title 'Lambda-Ru(TAP)2dppz bound to d(CCGGCTCCGG)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5IP8 _struct_keywords.text 'Sequence specific, DNA, ruthenium, photooxidising' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5IP8 5IP8 ? 1 ? 1 2 PDB 5IP8 5IP8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5IP8 B 1 ? 10 ? 5IP8 1 ? 10 ? 1 10 2 2 5IP8 A 1 ? 10 ? 5IP8 1 ? 10 ? 1 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1900 ? 1 MORE -30 ? 1 'SSA (A^2)' 4670 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? B DG 4 B BA 101 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? B BA 101 B HOH 207 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? B BA 101 B HOH 215 1_555 ? ? ? ? ? ? ? 2.829 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? B BA 101 B HOH 219 1_555 ? ? ? ? ? ? ? 2.748 ? ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? B BA 101 B HOH 222 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc6 metalc ? ? C BA . BA ? ? ? 1_555 G HOH . O ? ? B BA 101 B HOH 239 1_555 ? ? ? ? ? ? ? 2.894 ? ? metalc7 metalc ? ? C BA . BA ? ? ? 1_555 H HOH . O ? ? B BA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc8 metalc ? ? G HOH . O ? ? ? 1_555 F BA . BA ? ? B HOH 205 A BA 101 1_555 ? ? ? ? ? ? ? 2.816 ? ? metalc9 metalc ? ? B DG 4 O6 ? ? ? 1_555 F BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 2.873 ? ? metalc10 metalc ? ? F BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.667 ? ? metalc11 metalc ? ? F BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.622 ? ? metalc12 metalc ? ? F BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.681 ? ? metalc13 metalc ? ? F BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.727 ? ? metalc14 metalc ? ? F BA . BA ? ? ? 1_555 H HOH . O ? ? A BA 101 A HOH 229 1_555 ? ? ? ? ? ? ? 2.891 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 1 A DG 10 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 2 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 2 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 2 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 3 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 3 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 3 A DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 4 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 4 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 4 A DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 5 A DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 5 A DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? B DG 6 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? B DG 6 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? B DG 6 A DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 7 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 7 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 7 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 8 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 8 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 8 A DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 9 A DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 9 A DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 9 A DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 10 A DC 1 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 207 ? 1_555 73.7 ? 2 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 215 ? 1_555 138.8 ? 3 O ? G HOH . ? B HOH 207 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 215 ? 1_555 73.0 ? 4 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 219 ? 1_555 127.6 ? 5 O ? G HOH . ? B HOH 207 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 219 ? 1_555 138.7 ? 6 O ? G HOH . ? B HOH 215 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 219 ? 1_555 69.8 ? 7 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 222 ? 1_555 92.5 ? 8 O ? G HOH . ? B HOH 207 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 222 ? 1_555 146.8 ? 9 O ? G HOH . ? B HOH 215 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 222 ? 1_555 128.4 ? 10 O ? G HOH . ? B HOH 219 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 222 ? 1_555 73.5 ? 11 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 133.7 ? 12 O ? G HOH . ? B HOH 207 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 87.9 ? 13 O ? G HOH . ? B HOH 215 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 67.9 ? 14 O ? G HOH . ? B HOH 219 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 94.2 ? 15 O ? G HOH . ? B HOH 222 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? G HOH . ? B HOH 239 ? 1_555 80.2 ? 16 O6 ? A DG 4 ? B DG 4 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 64.4 ? 17 O ? G HOH . ? B HOH 207 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 72.4 ? 18 O ? G HOH . ? B HOH 215 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 125.2 ? 19 O ? G HOH . ? B HOH 219 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 146.1 ? 20 O ? G HOH . ? B HOH 222 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 74.4 ? 21 O ? G HOH . ? B HOH 239 ? 1_555 BA ? C BA . ? B BA 101 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 69.7 ? 22 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O6 ? B DG 4 ? A DG 4 ? 1_555 63.0 ? 23 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 76.5 ? 24 O6 ? B DG 4 ? A DG 4 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 71.3 ? 25 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 210 ? 1_555 141.8 ? 26 O6 ? B DG 4 ? A DG 4 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 210 ? 1_555 132.5 ? 27 O ? H HOH . ? A HOH 203 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 210 ? 1_555 138.2 ? 28 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 130.5 ? 29 O6 ? B DG 4 ? A DG 4 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 137.9 ? 30 O ? H HOH . ? A HOH 203 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 74.6 ? 31 O ? H HOH . ? A HOH 210 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 66.3 ? 32 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 71.3 ? 33 O6 ? B DG 4 ? A DG 4 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 97.8 ? 34 O ? H HOH . ? A HOH 203 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 147.4 ? 35 O ? H HOH . ? A HOH 210 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 71.9 ? 36 O ? H HOH . ? A HOH 213 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 217 ? 1_555 124.1 ? 37 O ? G HOH . ? B HOH 205 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 70.2 ? 38 O6 ? B DG 4 ? A DG 4 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 132.7 ? 39 O ? H HOH . ? A HOH 203 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 91.9 ? 40 O ? H HOH . ? A HOH 210 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 89.5 ? 41 O ? H HOH . ? A HOH 213 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 71.5 ? 42 O ? H HOH . ? A HOH 217 ? 1_555 BA ? F BA . ? A BA 101 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 72.7 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B BA 101 ? 8 'binding site for residue BA B 101' AC2 Software B RKL 102 ? 12 'binding site for residue RKL B 102' AC3 Software B RKL 103 ? 11 'binding site for residue RKL B 103' AC4 Software A BA 101 ? 8 'binding site for residue BA A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH H . ? HOH A 202 . ? 1_555 ? 2 AC1 8 DG A 3 ? DG B 3 . ? 1_555 ? 3 AC1 8 DG A 4 ? DG B 4 . ? 1_555 ? 4 AC1 8 HOH G . ? HOH B 207 . ? 1_555 ? 5 AC1 8 HOH G . ? HOH B 215 . ? 1_555 ? 6 AC1 8 HOH G . ? HOH B 219 . ? 1_555 ? 7 AC1 8 HOH G . ? HOH B 222 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH B 239 . ? 1_555 ? 9 AC2 12 DC B 7 ? DC A 7 . ? 1_555 ? 10 AC2 12 DC B 8 ? DC A 8 . ? 1_555 ? 11 AC2 12 DG B 9 ? DG A 9 . ? 4_555 ? 12 AC2 12 DG B 10 ? DG A 10 . ? 4_555 ? 13 AC2 12 HOH H . ? HOH A 209 . ? 1_555 ? 14 AC2 12 DC A 1 ? DC B 1 . ? 4_555 ? 15 AC2 12 DC A 2 ? DC B 2 . ? 4_555 ? 16 AC2 12 DG A 3 ? DG B 3 . ? 1_555 ? 17 AC2 12 DG A 3 ? DG B 3 . ? 4_555 ? 18 AC2 12 DG A 4 ? DG B 4 . ? 1_555 ? 19 AC2 12 HOH G . ? HOH B 206 . ? 1_555 ? 20 AC2 12 HOH G . ? HOH B 220 . ? 1_555 ? 21 AC3 11 DC B 1 ? DC A 1 . ? 1_555 ? 22 AC3 11 DC B 2 ? DC A 2 . ? 1_555 ? 23 AC3 11 DG B 3 ? DG A 3 . ? 4_565 ? 24 AC3 11 DG B 3 ? DG A 3 . ? 1_555 ? 25 AC3 11 DG B 4 ? DG A 4 . ? 4_565 ? 26 AC3 11 DC A 7 ? DC B 7 . ? 4_565 ? 27 AC3 11 DC A 8 ? DC B 8 . ? 4_565 ? 28 AC3 11 DG A 9 ? DG B 9 . ? 1_555 ? 29 AC3 11 DG A 10 ? DG B 10 . ? 1_555 ? 30 AC3 11 HOH G . ? HOH B 214 . ? 4_565 ? 31 AC3 11 HOH G . ? HOH B 221 . ? 1_555 ? 32 AC4 8 DG B 3 ? DG A 3 . ? 1_555 ? 33 AC4 8 DG B 4 ? DG A 4 . ? 1_555 ? 34 AC4 8 HOH H . ? HOH A 203 . ? 1_555 ? 35 AC4 8 HOH H . ? HOH A 210 . ? 1_555 ? 36 AC4 8 HOH H . ? HOH A 213 . ? 1_555 ? 37 AC4 8 HOH H . ? HOH A 217 . ? 1_555 ? 38 AC4 8 HOH H . ? HOH A 229 . ? 1_555 ? 39 AC4 8 HOH G . ? HOH B 205 . ? 1_555 ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 240 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.45 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 RKL RU RU N N 148 RKL C1 C Y N 149 RKL N1 N Y N 150 RKL C2 C Y N 151 RKL N2 N Y N 152 RKL C3 C Y N 153 RKL N3 N Y N 154 RKL C4 C Y N 155 RKL N4 N Y N 156 RKL C5 C Y N 157 RKL N5 N Y N 158 RKL C6 C Y N 159 RKL N6 N Y N 160 RKL C7 C Y N 161 RKL N7 N Y N 162 RKL C8 C Y N 163 RKL N8 N Y N 164 RKL C9 C Y N 165 RKL N9 N Y N 166 RKL C10 C Y N 167 RKL N10 N Y N 168 RKL C11 C Y N 169 RKL N11 N Y N 170 RKL C12 C Y N 171 RKL N12 N Y N 172 RKL C13 C Y N 173 RKL C14 C Y N 174 RKL C15 C Y N 175 RKL C16 C Y N 176 RKL C17 C Y N 177 RKL C18 C Y N 178 RKL C19 C Y N 179 RKL C20 C Y N 180 RKL C21 C Y N 181 RKL C22 C Y N 182 RKL C23 C Y N 183 RKL C24 C Y N 184 RKL C25 C Y N 185 RKL C26 C Y N 186 RKL C27 C Y N 187 RKL C28 C Y N 188 RKL C29 C Y N 189 RKL C30 C Y N 190 RKL C31 C Y N 191 RKL C32 C Y N 192 RKL C33 C Y N 193 RKL C34 C Y N 194 RKL C35 C Y N 195 RKL C36 C Y N 196 RKL C37 C Y N 197 RKL C38 C Y N 198 RKL H2 H N N 199 RKL H3 H N N 200 RKL H4 H N N 201 RKL H9 H N N 202 RKL H11 H N N 203 RKL H12 H N N 204 RKL H14 H N N 205 RKL H16 H N N 206 RKL H17 H N N 207 RKL H18 H N N 208 RKL H20 H N N 209 RKL H21 H N N 210 RKL H23 H N N 211 RKL H24 H N N 212 RKL H27 H N N 213 RKL H28 H N N 214 RKL H30 H N N 215 RKL H31 H N N 216 RKL H33 H N N 217 RKL H34 H N N 218 RKL H37 H N N 219 RKL H38 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RKL RU N1 sing N N 152 RKL RU N2 sing N N 153 RKL RU N5 sing N N 154 RKL RU N8 sing N N 155 RKL RU N9 sing N N 156 RKL RU N12 sing N N 157 RKL C1 N2 doub Y N 158 RKL C1 C5 sing Y N 159 RKL C1 C10 sing Y N 160 RKL N1 C10 doub Y N 161 RKL N1 C12 sing Y N 162 RKL C2 N2 sing Y N 163 RKL C2 C3 doub Y N 164 RKL C2 H2 sing N N 165 RKL C3 C4 sing Y N 166 RKL C3 H3 sing N N 167 RKL N3 C6 doub Y N 168 RKL N3 C15 sing Y N 169 RKL C4 C5 doub Y N 170 RKL C4 H4 sing N N 171 RKL N4 C7 doub Y N 172 RKL N4 C13 sing Y N 173 RKL C5 C6 sing Y N 174 RKL N5 C19 doub Y N 175 RKL N5 C20 sing Y N 176 RKL C6 C7 sing Y N 177 RKL N6 C21 sing Y N 178 RKL N6 C22 doub Y N 179 RKL C7 C8 sing Y N 180 RKL N7 C25 doub Y N 181 RKL N7 C27 sing Y N 182 RKL C8 C9 doub Y N 183 RKL C8 C10 sing Y N 184 RKL N8 C26 doub Y N 185 RKL N8 C28 sing Y N 186 RKL C9 C11 sing Y N 187 RKL C9 H9 sing N N 188 RKL N9 C29 doub Y N 189 RKL N9 C30 sing Y N 190 RKL N10 C31 sing Y N 191 RKL N10 C32 doub Y N 192 RKL C11 C12 doub Y N 193 RKL C11 H11 sing N N 194 RKL N11 C35 doub Y N 195 RKL N11 C37 sing Y N 196 RKL C12 H12 sing N N 197 RKL N12 C36 doub Y N 198 RKL N12 C38 sing Y N 199 RKL C13 C14 sing Y N 200 RKL C13 C15 doub Y N 201 RKL C14 C18 doub Y N 202 RKL C14 H14 sing N N 203 RKL C15 C16 sing Y N 204 RKL C16 C17 doub Y N 205 RKL C16 H16 sing N N 206 RKL C17 C18 sing Y N 207 RKL C17 H17 sing N N 208 RKL C18 H18 sing N N 209 RKL C19 C22 sing Y N 210 RKL C19 C26 sing Y N 211 RKL C20 C21 doub Y N 212 RKL C20 H20 sing N N 213 RKL C21 H21 sing N N 214 RKL C22 C23 sing Y N 215 RKL C23 C24 doub Y N 216 RKL C23 H23 sing N N 217 RKL C24 C25 sing Y N 218 RKL C24 H24 sing N N 219 RKL C25 C26 sing Y N 220 RKL C27 C28 doub Y N 221 RKL C27 H27 sing N N 222 RKL C28 H28 sing N N 223 RKL C29 C32 sing Y N 224 RKL C29 C36 sing Y N 225 RKL C30 C31 doub Y N 226 RKL C30 H30 sing N N 227 RKL C31 H31 sing N N 228 RKL C32 C33 sing Y N 229 RKL C33 C34 doub Y N 230 RKL C33 H33 sing N N 231 RKL C34 C35 sing Y N 232 RKL C34 H34 sing N N 233 RKL C35 C36 sing Y N 234 RKL C37 C38 doub Y N 235 RKL C37 H37 sing N N 236 RKL C38 H38 sing N N 237 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5IP8 'double helix' 5IP8 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.384 2.181 0.144 -2.319 7.246 -78.656 1 B_DC1:DG10_A B 1 ? A 10 ? ? ? 1 A DC 2 1_555 B DG 9 1_555 0.233 -0.071 0.029 -6.766 5.014 0.036 2 B_DC2:DG9_A B 2 ? A 9 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.197 -0.026 0.210 26.920 -5.453 0.402 3 B_DG3:DC8_A B 3 ? A 8 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.191 -0.091 -0.224 -14.359 1.730 1.586 4 B_DG4:DC7_A B 4 ? A 7 ? 19 1 1 A DA 5 1_555 B DT 6 1_555 0.043 -0.345 0.389 -3.877 -6.296 8.319 5 B_DA5:DT6_A B 5 ? A 6 ? 20 1 1 A DG 6 1_555 B DC 5 1_555 0.185 0.052 0.486 4.941 -3.781 -0.750 6 B_DG6:DC5_A B 6 ? A 5 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.240 -0.114 -0.213 14.203 2.583 -0.053 7 B_DC7:DG4_A B 7 ? A 4 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.178 -0.009 0.279 -27.008 -5.256 0.517 8 B_DC8:DG3_A B 8 ? A 3 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.240 -0.054 0.060 6.443 5.539 0.035 9 B_DG9:DC2_A B 9 ? A 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.363 -1.803 -1.788 22.318 -16.505 80.985 10 B_DG10:DC1_A B 10 ? A 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.044 1.611 2.699 0.591 4.537 20.156 2.748 0.349 2.982 12.751 -1.662 20.664 1 BB_DC2DG3:DC8DG9_AA B 2 ? A 9 ? B 3 ? A 8 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.121 0.940 5.420 -1.156 53.000 13.080 -5.479 -0.009 2.261 77.117 1.681 54.489 2 BB_DG3DG4:DC7DC8_AA B 3 ? A 8 ? B 4 ? A 7 ? 1 A DG 4 1_555 B DC 7 1_555 A DA 5 1_555 B DT 6 1_555 -1.043 0.592 3.192 -8.947 7.176 32.099 -0.179 0.299 3.404 12.491 15.572 34.035 3 BB_DG4DA5:DT6DC7_AA B 4 ? A 7 ? B 5 ? A 6 ? 1 A DA 5 1_555 B DT 6 1_555 A DG 6 1_555 B DC 5 1_555 -0.262 -0.066 3.192 -0.395 9.519 30.279 -1.829 0.409 3.036 17.682 0.733 31.709 4 BB_DA5DG6:DC5DT6_AA B 5 ? A 6 ? B 6 ? A 5 ? 1 A DG 6 1_555 B DC 5 1_555 A DC 7 1_555 B DG 4 1_555 0.820 -0.180 3.206 8.605 8.252 33.411 -1.518 -0.074 3.182 13.819 -14.409 35.417 5 BB_DG6DC7:DG4DC5_AA B 6 ? A 5 ? B 7 ? A 4 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 0.048 0.941 5.446 0.103 52.133 14.078 -5.506 -0.040 2.379 75.936 -0.150 53.872 6 BB_DC7DC8:DG3DG4_AA B 7 ? A 4 ? B 8 ? A 3 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.030 1.582 2.707 -0.280 3.927 19.787 2.942 -0.199 2.961 11.282 0.805 20.171 7 BB_DC8DG9:DC2DG3_AA B 8 ? A 3 ? B 9 ? A 2 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 4.263 5.522 -0.745 162.569 -42.771 80.064 2.820 -1.947 1.595 -21.923 -83.329 170.896 8 BB_DG9DG10:DC1DC2_AA B 9 ? A 2 ? B 10 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/K019279/1 1 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/M004635/1 2 # _atom_sites.entry_id 5IP8 _atom_sites.fract_transf_matrix[1][1] 0.021075 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021075 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028466 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C N O P RU # loop_