HEADER TOXIN 09-MAR-16 5IPO TITLE SOLUTION STRUCTURE OF HGE36: SCORPINE-LIKE PEPTIDE FROM HADRURUS TITLE 2 GERTSCHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HGE-SCORPINE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HG-SCORPINE-LIKE 1,HGSCPLIKE1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HADRURUS GERTSCHI; SOURCE 3 ORGANISM_COMMON: SCORPION; SOURCE 4 ORGANISM_TAXID: 380989; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS SCORPINE-LIKE PEPTIDE, HADRURUS GERTSCHI, ANTIPARASITIC ACTIVITY, KEYWDS 2 TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.FLORES-SOLIS,R.RODRIGUEZ DE LA VEGA,F.DEL RIO-PORTILLA REVDAT 2 10-AUG-16 5IPO 1 JRNL REVDAT 1 29-JUN-16 5IPO 0 JRNL AUTH D.FLORES-SOLIS,Y.TOLEDANO,O.RODRIGUEZ-LIMA,P.CANO-SANCHEZ, JRNL AUTH 2 B.E.RAMIREZ-CORDERO,A.LANDA,R.C.RODRIGUEZ DE LA VEGA, JRNL AUTH 3 F.DEL RIO-PORTILLA JRNL TITL SOLUTION STRUCTURE AND ANTIPARASITIC ACTIVITY OF JRNL TITL 2 SCORPINE-LIKE PEPTIDES FROM HOFFMANNIHADRURUS GERTSCHI. JRNL REF FEBS LETT. V. 590 2286 2016 JRNL REFN ISSN 0014-5793 JRNL PMID 27314815 JRNL DOI 10.1002/1873-3468.12255 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219221. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 3 REMARK 210 PRESSURE : 585 MMHG REMARK 210 SAMPLE CONTENTS : 3.0 MM HGE36, 95% H2O/5% D2O; REMARK 210 3.0 MM [U-13C; U-15N] HGE36, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H NOESY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CARA, CYANA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 CYS A 11 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 3 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 VAL A 17 CA - CB - CG2 ANGL. DEV. = 9.1 DEGREES REMARK 500 12 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 13 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 15 VAL A 17 CA - CB - CG2 ANGL. DEV. = 10.5 DEGREES REMARK 500 15 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 19 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 44.93 -86.63 REMARK 500 1 ALA A 5 9.50 47.57 REMARK 500 1 LYS A 18 -66.83 28.94 REMARK 500 1 ASP A 20 101.08 55.30 REMARK 500 1 HIS A 35 67.95 -100.87 REMARK 500 1 SER A 46 81.26 -69.82 REMARK 500 2 LYS A 3 37.88 -79.60 REMARK 500 2 ALA A 5 25.03 49.50 REMARK 500 2 LYS A 18 123.15 81.27 REMARK 500 2 ASP A 20 153.62 60.01 REMARK 500 3 ALA A 5 13.57 47.48 REMARK 500 3 ASP A 20 99.27 44.37 REMARK 500 3 HIS A 35 27.14 -79.19 REMARK 500 3 SER A 46 110.09 -35.92 REMARK 500 4 LYS A 3 47.42 -82.46 REMARK 500 4 MET A 4 73.40 -119.22 REMARK 500 4 ALA A 5 9.64 57.03 REMARK 500 4 ASP A 20 91.33 54.11 REMARK 500 5 ALA A 5 -16.16 63.70 REMARK 500 5 ASP A 16 66.89 -113.05 REMARK 500 5 ASP A 20 118.48 52.37 REMARK 500 5 CYS A 34 40.62 -91.40 REMARK 500 5 HIS A 35 39.31 -73.94 REMARK 500 6 LYS A 3 49.30 -73.85 REMARK 500 6 MET A 4 61.24 -113.57 REMARK 500 6 ASP A 16 63.20 -108.21 REMARK 500 6 ASP A 20 97.01 41.39 REMARK 500 7 MET A 4 53.61 -153.70 REMARK 500 7 ALA A 5 -15.40 62.58 REMARK 500 7 GLN A 8 42.55 -142.00 REMARK 500 7 ASP A 16 71.95 -111.58 REMARK 500 7 ASP A 20 99.64 47.15 REMARK 500 7 HIS A 35 30.94 -67.41 REMARK 500 8 MET A 4 62.35 -117.13 REMARK 500 8 GLN A 8 35.93 -88.71 REMARK 500 8 ASP A 16 47.14 -108.83 REMARK 500 8 VAL A 17 155.15 -47.52 REMARK 500 8 HIS A 35 10.41 -68.79 REMARK 500 9 ALA A 5 10.19 50.90 REMARK 500 9 ASP A 20 108.40 52.38 REMARK 500 10 LYS A 3 43.32 -70.37 REMARK 500 10 GLN A 8 33.90 -95.99 REMARK 500 10 LYS A 18 69.63 1.07 REMARK 500 10 ASP A 20 143.93 55.83 REMARK 500 11 ALA A 5 14.31 55.31 REMARK 500 11 ASP A 20 115.04 32.12 REMARK 500 11 TYR A 47 39.24 -93.06 REMARK 500 12 LYS A 18 3.01 -66.96 REMARK 500 12 ASP A 20 90.76 43.93 REMARK 500 13 LYS A 3 40.73 -79.68 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30033 RELATED DB: BMRB DBREF 5IPO A 1 48 UNP Q0GY40 KBX3_HADGE 48 95 SEQRES 1 A 48 VAL HIS LYS MET ALA LYS ASN GLN PHE GLY CYS PHE ALA SEQRES 2 A 48 ASN VAL ASP VAL LYS GLY ASP CYS LYS ARG HIS CYS LYS SEQRES 3 A 48 ALA GLU ASP LYS GLU GLY ILE CYS HIS GLY THR LYS CYS SEQRES 4 A 48 LYS CYS GLY VAL PRO ILE SER TYR LEU HELIX 1 AA1 ASP A 20 GLU A 28 1 9 SHEET 1 AA1 2 LYS A 30 CYS A 34 0 SHEET 2 AA1 2 CYS A 39 PRO A 44 -1 O LYS A 40 N ILE A 33 SSBOND 1 CYS A 11 CYS A 34 1555 1555 2.04 SSBOND 2 CYS A 21 CYS A 39 1555 1555 2.04 SSBOND 3 CYS A 25 CYS A 41 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1