HEADER OXIDOREDUCTASE 11-MAR-16 5IQY TITLE STRUCTURE OF APO-DEHYDROASCORBATE REDUCTASE FROM PENNISETUM GLAUCUM TITLE 2 PHASED BY IODIDE-SAD METHOD COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROASCORBATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.5.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENNISETUM AMERICANUM; SOURCE 3 ORGANISM_COMMON: PEARL MILLET,CENCHRUS AMERICANUS; SOURCE 4 ORGANISM_TAXID: 4543; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DEHYDROASCORBATE REDUCTASE, IODIDE-SAD METHOD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.K.DAS,A.KUMAR,P.MANIDOLA,A.AROCKIASAMY REVDAT 4 20-MAR-24 5IQY 1 REMARK REVDAT 3 04-OCT-17 5IQY 1 JRNL REMARK REVDAT 2 18-MAY-16 5IQY 1 JRNL REVDAT 1 04-MAY-16 5IQY 0 JRNL AUTH B.K.DAS,A.KUMAR,P.MAINDOLA,S.MAHANTY,S.K.JAIN,M.K.REDDY, JRNL AUTH 2 A.AROCKIASAMY JRNL TITL NON-NATIVE LIGANDS DEFINE THE ACTIVE SITE OF PENNISETUM JRNL TITL 2 GLAUCUM (L.) R. BR DEHYDROASCORBATE REDUCTASE JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 473 1152 2016 JRNL REFN ESSN 1090-2104 JRNL PMID 27067046 JRNL DOI 10.1016/J.BBRC.2016.04.031 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.830 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2962 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1948 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2673 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2482 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.76 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 289 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1598 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81210 REMARK 3 B22 (A**2) : -8.20620 REMARK 3 B33 (A**2) : 6.39420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.282 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.315 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.227 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.295 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.223 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1644 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2243 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 533 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 35 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 236 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1644 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 217 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2030 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.24 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|3 - A|213 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.0876 12.3115 40.2710 REMARK 3 T TENSOR REMARK 3 T11: -0.0024 T22: 0.0112 REMARK 3 T33: 0.0564 T12: -0.0306 REMARK 3 T13: -0.0531 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.3597 L22: 2.6475 REMARK 3 L33: 5.6609 L12: 0.0275 REMARK 3 L13: 0.0596 L23: -1.8239 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0157 S13: 0.1429 REMARK 3 S21: 0.1915 S22: -0.1233 S23: 0.0349 REMARK 3 S31: -0.3772 S32: 0.1870 S33: 0.1341 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 66.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.30 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, LITHIUM SULFATE, AMMONIUM REMARK 280 SULFATE, PH 4.6, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.44500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.44500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.78500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.44500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.78500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.44500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 69 CD CE NZ REMARK 470 TYR A 96 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 109 CD CE NZ REMARK 470 LYS A 112 CE NZ REMARK 470 LYS A 114 NZ REMARK 470 LYS A 122 CE NZ REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 LYS A 136 CE NZ REMARK 470 GLU A 166 CD OE1 OE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 GLU A 175 OE1 OE2 REMARK 470 LYS A 185 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 69.90 -153.79 REMARK 500 ASP A 73 105.63 78.20 REMARK 500 SER A 143 -129.82 -92.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 325 DBREF 5IQY A 1 213 UNP U5XYA0 U5XYA0_PENAM 1 213 SEQADV 5IQY GLY A -2 UNP U5XYA0 EXPRESSION TAG SEQADV 5IQY SER A -1 UNP U5XYA0 EXPRESSION TAG SEQADV 5IQY HIS A 0 UNP U5XYA0 EXPRESSION TAG SEQRES 1 A 216 GLY SER HIS MET ALA VAL GLU VAL CYS VAL LYS ALA ALA SEQRES 2 A 216 VAL GLY ALA PRO ASP ILE LEU GLY ASP CYS PRO PHE SER SEQRES 3 A 216 GLN ARG VAL LEU LEU THR LEU GLU GLU LYS LYS ILE THR SEQRES 4 A 216 TYR GLU MET LYS LEU VAL ASP LEU SER ASN LYS PRO GLU SEQRES 5 A 216 TRP PHE LEU LYS ILE SER PRO GLU GLY LYS VAL PRO VAL SEQRES 6 A 216 PHE ASN SER GLY ASP GLY LYS TRP ILE ALA ASP SER ASP SEQRES 7 A 216 VAL ILE THR GLN VAL ILE GLU GLU LYS PHE PRO THR PRO SEQRES 8 A 216 SER LEU VAL THR PRO PRO GLU TYR ALA SER VAL GLY SER SEQRES 9 A 216 LYS ILE PHE PRO SER PHE VAL LYS PHE LEU LYS SER LYS SEQRES 10 A 216 ASP ALA SER ASP GLY SER GLU LYS ALA LEU LEU ASP GLU SEQRES 11 A 216 LEU GLN ALA LEU ASP GLU HIS LEU LYS ALA HIS GLY PRO SEQRES 12 A 216 TYR ILE SER GLY GLU ASN VAL SER ALA ALA ASP LEU SER SEQRES 13 A 216 LEU GLY PRO LYS LEU PHE HIS LEU GLN VAL ALA LEU GLU SEQRES 14 A 216 HIS PHE LYS GLY TRP LYS ILE PRO GLU ASN LEU THR SER SEQRES 15 A 216 VAL HIS ALA TYR THR LYS ALA LEU PHE SER ARG GLU SER SEQRES 16 A 216 PHE VAL LYS THR LYS PRO ALA ASN GLN TYR LEU ILE ALA SEQRES 17 A 216 GLY TRP ALA PRO LYS VAL ASN ALA HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET IOD A 309 1 HET IOD A 310 1 HET IOD A 311 1 HET IOD A 312 1 HET IOD A 313 1 HET IOD A 314 1 HET IOD A 315 1 HET IOD A 316 1 HET IOD A 317 1 HET IOD A 318 1 HET IOD A 319 1 HET IOD A 320 1 HET IOD A 321 1 HET IOD A 322 1 HET IOD A 323 1 HET IOD A 324 1 HET IOD A 325 1 HET IOD A 326 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 26(I 1-) FORMUL 28 HOH *95(H2 O) HELIX 1 AA1 CYS A 20 LYS A 33 1 14 HELIX 2 AA2 PRO A 48 SER A 55 1 8 HELIX 3 AA3 ASP A 73 PHE A 85 1 13 HELIX 4 AA4 PRO A 93 ALA A 97 5 5 HELIX 5 AA5 LYS A 102 SER A 113 1 12 HELIX 6 AA6 GLY A 119 GLY A 139 1 21 HELIX 7 AA7 SER A 148 GLY A 170 1 23 HELIX 8 AA8 LEU A 177 SER A 189 1 13 HELIX 9 AA9 ARG A 190 LYS A 197 1 8 HELIX 10 AB1 ALA A 199 ALA A 213 1 15 SHEET 1 AA1 3 ALA A 13 LEU A 17 0 SHEET 2 AA1 3 GLU A 4 ALA A 10 -1 N ALA A 10 O ILE A 16 SHEET 3 AA1 3 GLU A 38 VAL A 42 1 O LYS A 40 N VAL A 5 SHEET 1 AA2 4 ALA A 13 LEU A 17 0 SHEET 2 AA2 4 GLU A 4 ALA A 10 -1 N ALA A 10 O ILE A 16 SHEET 3 AA2 4 VAL A 62 ASN A 64 -1 O VAL A 62 N CYS A 6 SHEET 4 AA2 4 ILE A 71 ALA A 72 -1 O ILE A 71 N PHE A 63 CISPEP 1 VAL A 60 PRO A 61 0 -4.96 CISPEP 2 THR A 87 PRO A 88 0 -2.29 CISPEP 3 GLY A 139 PRO A 140 0 3.46 SITE 1 AC1 2 GLY A 100 ALA A 130 SITE 1 AC2 1 ASP A 15 SITE 1 AC3 2 SER A 153 LYS A 157 SITE 1 AC4 1 GLU A 191 SITE 1 AC5 3 GLN A 129 HIS A 138 ASN A 176 SITE 1 AC6 2 THR A 87 SER A 89 SITE 1 AC7 1 THR A 87 SITE 1 AC8 2 GLY A 68 TRP A 70 SITE 1 AC9 2 PRO A 93 GLU A 95 SITE 1 AD1 1 GLN A 79 SITE 1 AD2 1 GLY A 170 SITE 1 AD3 1 LEU A 17 SITE 1 AD4 2 LYS A 47 HOH A 474 CRYST1 40.890 132.080 97.570 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010249 0.00000