HEADER OXIDOREDUCTASE 12-MAR-16 5IR5 TITLE CRYSTAL STRUCTURE OF WILD-TYPE BACTERIAL LIPOXYGENASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PA-LOX WITH SPACE GROUP P21212 AT 1.9 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 15-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LINOLEATE 13-LIPOXYGENASE; COMPND 5 EC: 1.13.11.12,1.13.11.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: IOMTU133_4416; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NON-HEME IRON ENZYME, PROTEIN-PHOSPHOLIPID COMPLEX, OXIDOREDUCTASE, KEYWDS 2 EICOSANOIDS, INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR J.KALMS,S.BANTHIYA,E.GALEMOU YOGA,H.KUHN,P.SCHEERER REVDAT 5 10-JAN-24 5IR5 1 LINK REVDAT 4 06-SEP-17 5IR5 1 REMARK REVDAT 3 31-AUG-16 5IR5 1 JRNL REVDAT 2 17-AUG-16 5IR5 1 JRNL REVDAT 1 10-AUG-16 5IR5 0 JRNL AUTH S.BANTHIYA,J.KALMS,E.GALEMOU YOGA,I.IVANOV,X.CARPENA, JRNL AUTH 2 M.HAMBERG,H.KUHN,P.SCHEERER JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS OF PHOSPHOLIPID OXYGENASE JRNL TITL 2 ACTIVITY OF BACTERIAL LIPOXYGENASE FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1861 1681 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 27500637 JRNL DOI 10.1016/J.BBALIP.2016.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 50471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2586 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.521 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.331 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5086 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4901 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6937 ; 1.224 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11241 ; 0.859 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 701 REMARK 3 RESIDUE RANGE : A 702 A 702 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6880 12.3385 3.1566 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: 0.0005 REMARK 3 T33: 0.1202 T12: -0.0007 REMARK 3 T13: -0.0050 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1099 L22: 0.1145 REMARK 3 L33: 0.0031 L12: 0.0108 REMARK 3 L13: -0.0125 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0002 S13: -0.0148 REMARK 3 S21: 0.0138 S22: -0.0002 S23: -0.0072 REMARK 3 S31: 0.0020 S32: -0.0002 S33: 0.0008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IR5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3350, 50 MM MGCL2, 100 MM REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.54650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.17650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.54650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.17650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 ASP A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 PHE A 24 REMARK 465 PHE A 25 REMARK 465 SER A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 LYS A 29 REMARK 465 TYR A 30 REMARK 465 LEU A 31 REMARK 465 GLY A 32 REMARK 465 ALA A 33 REMARK 465 GLU A 34 REMARK 465 GLN A 35 REMARK 465 GLN A 36 REMARK 465 ARG A 37 REMARK 465 SER A 38 REMARK 465 ILE A 39 REMARK 465 ASP A 40 REMARK 465 ALA A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 SER A 44 REMARK 465 LEU A 45 REMARK 465 LEU A 46 REMARK 465 ASP A 47 REMARK 465 ASN A 48 REMARK 465 LEU A 49 REMARK 465 SER A 197 REMARK 465 ASN A 198 REMARK 465 LEU A 199 REMARK 465 VAL A 200 REMARK 465 THR A 201 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 86 49.17 -141.59 REMARK 500 VAL A 86 48.26 -143.46 REMARK 500 ASP A 160 79.57 -155.56 REMARK 500 PHE A 375 -61.44 -95.27 REMARK 500 HIS A 377 -67.98 -91.31 REMARK 500 THR A 381 -81.96 -115.83 REMARK 500 SER A 552 -82.53 -104.99 REMARK 500 ILE A 572 135.53 -170.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1270 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1271 DISTANCE = 6.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 377 NE2 REMARK 620 2 HIS A 382 NE2 92.5 REMARK 620 3 HIS A 555 NE2 104.6 94.6 REMARK 620 4 ASN A 559 OD1 84.2 173.6 91.5 REMARK 620 5 ILE A 685 O 169.6 90.8 84.9 91.5 REMARK 620 6 HOH A 801 O 86.6 88.2 168.3 86.1 83.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 706 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1108 O REMARK 620 2 HOH A1173 O 126.0 REMARK 620 3 HOH A1244 O 118.4 98.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZPE A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 706 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IR4 RELATED DB: PDB DBREF 5IR5 A -2 685 PDB 5IR5 5IR5 -2 685 SEQRES 1 A 688 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 688 LEU VAL PRO ARG GLY SER HIS MET ALA ASN ASP SER ILE SEQRES 3 A 688 PHE PHE SER PRO LEU LYS TYR LEU GLY ALA GLU GLN GLN SEQRES 4 A 688 ARG SER ILE ASP ALA SER ARG SER LEU LEU ASP ASN LEU SEQRES 5 A 688 ILE PRO PRO SER LEU PRO GLN TYR ASP ASN LEU ALA GLY SEQRES 6 A 688 LYS LEU ALA ARG ARG ALA VAL LEU THR SER LYS LYS LEU SEQRES 7 A 688 VAL TYR VAL TRP THR GLU ASN PHE ALA ASN VAL LYS GLY SEQRES 8 A 688 VAL PRO MET ALA ARG SER VAL PRO LEU GLY GLU LEU PRO SEQRES 9 A 688 ASN VAL ASP TRP LEU LEU LYS THR ALA GLY VAL ILE VAL SEQRES 10 A 688 GLU LEU ILE VAL ASN PHE VAL ALA SER LEU PRO ALA SER SEQRES 11 A 688 ALA ALA ALA GLN PHE GLU ARG ILE ALA ALA GLY LEU SER SEQRES 12 A 688 GLY ASP LEU GLU ALA ALA ARG GLN VAL HIS GLU ALA LEU SEQRES 13 A 688 LEU GLU GLU ALA LYS ASN ASP PRO ALA ALA ALA GLY SER SEQRES 14 A 688 LEU LEU LEU ARG PHE THR GLU LEU GLN THR ARG VAL ILE SEQRES 15 A 688 ALA LEU LEU THR ARG VAL GLY LEU LEU VAL ASP ASP ILE SEQRES 16 A 688 LEU LYS SER ALA SER ASN LEU VAL THR GLN GLY GLY GLN SEQRES 17 A 688 GLY ASP GLY LEU ASN ARG PHE ARG ALA VAL PHE GLY THR SEQRES 18 A 688 LEU ARG LEU PRO GLU VAL ALA ASP SER PHE ARG ASP ASP SEQRES 19 A 688 GLU ALA PHE ALA TYR TRP ARG VAL ALA GLY PRO ASN PRO SEQRES 20 A 688 LEU LEU ILE ARG ARG VAL ASP ALA LEU PRO ALA ASN PHE SEQRES 21 A 688 PRO LEU GLY GLU GLU GLN PHE ARG ARG VAL MET GLY ALA SEQRES 22 A 688 ASP ASP SER LEU LEU GLU ALA ALA ALA SER ARG ARG LEU SEQRES 23 A 688 TYR LEU LEU ASP TYR ALA GLU LEU GLY LYS LEU ALA PRO SEQRES 24 A 688 SER GLY ALA VAL ASP LYS LEU LEU THR GLY THR GLY PHE SEQRES 25 A 688 ALA TYR ALA PRO ILE ALA LEU PHE ALA LEU GLY LYS ASP SEQRES 26 A 688 ARG ALA GLY LEU LEU PRO VAL ALA ILE GLN CYS GLY GLN SEQRES 27 A 688 ASP PRO ALA THR HIS PRO MET PHE VAL ARG PRO ALA GLU SEQRES 28 A 688 SER GLU SER ASP LEU TYR TRP GLY TRP GLN MET ALA LYS SEQRES 29 A 688 THR VAL VAL GLN VAL ALA GLU GLU ASN TYR HIS GLU MET SEQRES 30 A 688 PHE VAL HIS LEU ALA GLN THR HIS LEU VAL SER GLU ALA SEQRES 31 A 688 PHE CYS LEU ALA THR GLN ARG THR LEU ALA PRO SER HIS SEQRES 32 A 688 PRO LEU HIS VAL LEU LEU ALA PRO HIS PHE GLU GLY THR SEQRES 33 A 688 LEU PHE ILE ASN GLU GLY ALA ALA ARG ILE LEU LEU PRO SEQRES 34 A 688 SER ALA GLY PHE ILE ASP VAL MET PHE ALA ALA PRO ILE SEQRES 35 A 688 GLN ASP THR GLN ALA THR ALA GLY GLY ASN ARG LEU GLY SEQRES 36 A 688 PHE ASP PHE TYR ARG GLY MET LEU PRO GLU SER LEU LYS SEQRES 37 A 688 ALA ARG ASN VAL ASP ASP PRO ALA ALA LEU PRO ASP TYR SEQRES 38 A 688 PRO TYR ARG ASP ASP GLY LEU LEU VAL TRP ASN ALA ILE SEQRES 39 A 688 ARG GLN TRP ALA ALA ASP TYR VAL ALA VAL TYR TYR ALA SEQRES 40 A 688 SER ASP GLY ASP VAL THR ALA ASP VAL GLU LEU ALA ALA SEQRES 41 A 688 TRP VAL GLY GLU VAL ILE GLY SER GLY LYS VAL ALA GLY SEQRES 42 A 688 PHE ARG PRO ILE THR GLY ARG SER GLN LEU VAL GLU VAL SEQRES 43 A 688 LEU THR MET VAL ILE PHE THR ALA SER ALA GLN HIS ALA SEQRES 44 A 688 ALA VAL ASN PHE PRO GLN PRO SER MET MET THR TYR ALA SEQRES 45 A 688 PRO ALA ILE CYS ALA MET SER ALA ALA PRO ALA PRO ASP SEQRES 46 A 688 SER PRO SER GLY LYS SER GLU ALA ASP TRP LEU LYS MET SEQRES 47 A 688 MET PRO PRO THR LEU VAL ALA LEU GLU LYS VAL ASN ILE SEQRES 48 A 688 TYR HIS LEU LEU GLY SER VAL TYR HIS GLY ARG LEU GLY SEQRES 49 A 688 ASP TYR ARG GLN THR GLY PHE PRO TYR ALA PRO VAL PHE SEQRES 50 A 688 SER ASP ARG ARG VAL THR ALA SER GLY GLY PRO LEU GLU SEQRES 51 A 688 ARG PHE GLN ALA ARG LEU LYS GLU VAL GLU ALA THR ILE SEQRES 52 A 688 ARG THR ARG ASN GLN ALA ARG ARG LYS PRO TYR GLU TYR SEQRES 53 A 688 LEU LEU PRO SER ARG ILE PRO ALA SER THR ASN ILE HET FE2 A 701 1 HET ZPE A 702 47 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET NA A 706 1 HETNAM FE2 FE (II) ION HETNAM ZPE (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2- HETNAM 2 ZPE (TETRADEC-5-ENOYLOXY)PROPYL (11Z)-OCTADEC-11-ENOATE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FE2 FE 2+ FORMUL 3 ZPE C37 H70 N O8 P FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 NA NA 1+ FORMUL 8 HOH *471(H2 O) HELIX 1 AA1 LEU A 54 ASP A 58 5 5 HELIX 2 AA2 ASN A 59 TYR A 77 1 19 HELIX 3 AA3 PRO A 96 LEU A 100 5 5 HELIX 4 AA4 ASN A 102 LEU A 124 1 23 HELIX 5 AA5 PRO A 125 ALA A 130 1 6 HELIX 6 AA6 PHE A 132 ASP A 160 1 29 HELIX 7 AA7 PRO A 161 SER A 166 5 6 HELIX 8 AA8 LEU A 167 SER A 195 1 29 HELIX 9 AA9 LEU A 209 VAL A 215 1 7 HELIX 10 AB1 GLU A 223 PHE A 228 1 6 HELIX 11 AB2 ASP A 230 GLY A 241 1 12 HELIX 12 AB3 GLY A 260 GLY A 269 1 10 HELIX 13 AB4 SER A 273 SER A 280 1 8 HELIX 14 AB5 ALA A 289 ALA A 295 5 7 HELIX 15 AB6 GLU A 350 PHE A 375 1 26 HELIX 16 AB7 THR A 381 LEU A 396 1 16 HELIX 17 AB8 HIS A 400 ALA A 407 1 8 HELIX 18 AB9 PRO A 408 GLU A 411 5 4 HELIX 19 AC1 GLY A 412 LEU A 424 1 13 HELIX 20 AC2 GLY A 429 PHE A 435 1 7 HELIX 21 AC3 PRO A 438 PHE A 453 1 16 HELIX 22 AC4 MET A 459 ARG A 467 1 9 HELIX 23 AC5 TYR A 478 TYR A 503 1 26 HELIX 24 AC6 SER A 505 ALA A 511 1 7 HELIX 25 AC7 ASP A 512 GLY A 524 1 13 HELIX 26 AC8 GLY A 536 SER A 552 1 17 HELIX 27 AC9 SER A 552 PHE A 560 1 9 HELIX 28 AD1 PRO A 561 THR A 567 1 7 HELIX 29 AD2 SER A 588 LYS A 594 1 7 HELIX 30 AD3 PRO A 598 GLY A 613 1 16 HELIX 31 AD4 ASP A 636 ALA A 641 1 6 HELIX 32 AD5 GLY A 644 ARG A 667 1 24 HELIX 33 AD6 LEU A 675 ILE A 679 5 5 SHEET 1 AA1 2 TRP A 79 THR A 80 0 SHEET 2 AA1 2 MET A 91 ALA A 92 -1 O MET A 91 N THR A 80 SHEET 1 AA2 5 ARG A 248 ARG A 249 0 SHEET 2 AA2 5 LEU A 283 ASP A 287 -1 O LEU A 285 N ARG A 248 SHEET 3 AA2 5 ILE A 314 LEU A 319 -1 O PHE A 317 N TYR A 284 SHEET 4 AA2 5 LEU A 326 GLN A 332 -1 O VAL A 329 N LEU A 316 SHEET 5 AA2 5 MET A 342 VAL A 344 -1 O PHE A 343 N ILE A 331 SHEET 1 AA3 2 VAL A 300 LYS A 302 0 SHEET 2 AA3 2 GLY A 306 GLY A 308 -1 O GLY A 308 N VAL A 300 LINK NE2 HIS A 377 FE FE2 A 701 1555 1555 2.33 LINK NE2 HIS A 382 FE FE2 A 701 1555 1555 2.25 LINK NE2 HIS A 555 FE FE2 A 701 1555 1555 2.21 LINK OD1 ASN A 559 FE FE2 A 701 1555 1555 2.23 LINK O ILE A 685 FE FE2 A 701 1555 1555 2.22 LINK FE FE2 A 701 O HOH A 801 1555 1555 2.22 LINK NA NA A 706 O HOH A1108 1555 1555 2.83 LINK NA NA A 706 O HOH A1173 1555 1555 3.04 LINK NA NA A 706 O HOH A1244 1555 1555 2.59 CISPEP 1 PHE A 628 PRO A 629 0 6.69 SITE 1 AC1 6 HIS A 377 HIS A 382 HIS A 555 ASN A 559 SITE 2 AC1 6 ILE A 685 HOH A 801 SITE 1 AC2 16 LEU A 182 VAL A 185 GLY A 186 ASP A 190 SITE 2 AC2 16 GLU A 373 HIS A 382 PHE A 415 ILE A 416 SITE 3 AC2 16 ARG A 422 ILE A 423 LEU A 424 ASN A 607 SITE 4 AC2 16 ILE A 685 HOH A 836 HOH A 861 HOH A 990 SITE 1 AC3 3 THR A 659 THR A 662 HOH A1042 SITE 1 AC4 6 GLU A 99 GLN A 393 ALA A 407 PHE A 410 SITE 2 AC4 6 GLU A 411 HOH A 951 SITE 1 AC5 7 ALA A 516 VAL A 519 GLY A 520 PRO A 533 SITE 2 AC5 7 LYS A 654 HOH A 822 HOH A1104 SITE 1 AC6 3 HOH A1108 HOH A1173 HOH A1244 CRYST1 133.093 116.353 42.721 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023408 0.00000