HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-MAR-16 5IV0 TITLE CRYSTAL STRUCTURE OF EIS FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH SULFONAMIDE INHIBITOR 39 AND COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENHANCED INTRACELLULAR SURVIVAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / SOURCE 3 OSHKOSH); SOURCE 4 ORGANISM_TAXID: 83331; SOURCE 5 STRAIN: CDC 1551 / OSHKOSH; SOURCE 6 GENE: EIS, MT2489; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE, ACETYLTRANSFERASE, INHIBITOR, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.GAJADEERA,C.HOU,S.GARNEAU-TSODIKOVA,O.V.TSODIKOV REVDAT 4 06-MAR-24 5IV0 1 REMARK REVDAT 3 11-DEC-19 5IV0 1 REMARK REVDAT 2 20-SEP-17 5IV0 1 REMARK REVDAT 1 11-JAN-17 5IV0 0 JRNL AUTH A.GARZAN,M.J.WILLBY,K.D.GREEN,C.S.GAJADEERA,C.HOU, JRNL AUTH 2 O.V.TSODIKOV,J.E.POSEY,S.GARNEAU-TSODIKOVA JRNL TITL SULFONAMIDE-BASED INHIBITORS OF AMINOGLYCOSIDE JRNL TITL 2 ACETYLTRANSFERASE EIS ABOLISH RESISTANCE TO KANAMYCIN IN JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J. MED. CHEM. V. 59 10619 2016 JRNL REFN ISSN 1520-4804 JRNL PMID 27933949 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01161 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 37907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -1.60000 REMARK 3 B33 (A**2) : 5.18000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3162 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2995 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4305 ; 1.336 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6832 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 5.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;31.003 ;21.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;16.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3578 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1583 ; 1.495 ; 3.385 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1581 ; 1.496 ; 3.385 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1974 ; 2.597 ; 5.064 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1975 ; 2.596 ; 5.064 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 1.830 ; 3.644 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1575 ; 1.830 ; 3.644 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2323 ; 3.058 ; 5.363 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3634 ; 6.053 ;27.736 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3578 ; 5.904 ;27.512 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 8.5 ADJUSTED AT ROOM REMARK 280 TEMPERATURE (100 MM), PEG 8,000 (10-15% W/V), AND (NH4)2SO4 (0.4 REMARK 280 M), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 87.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.46041 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.66167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 87.40000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.46041 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.66167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 87.40000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.46041 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.66167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 87.40000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.46041 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.66167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 87.40000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.46041 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.66167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 87.40000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.46041 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.66167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.92083 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.32333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.92083 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 81.32333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.92083 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 81.32333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.92083 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.32333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.92083 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 81.32333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.92083 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 81.32333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 86240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 121.98500 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 121.98500 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 121.98500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 797 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 837 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 GLY A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 LEU A -12 REMARK 465 VAL A -11 REMARK 465 PRO A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 MET A -5 REMARK 465 LEU A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASP A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 PRO A 54 REMARK 465 GLY A 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 158 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 374 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 269 -153.07 -131.18 REMARK 500 TRP A 289 142.01 -172.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 COA A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6E9 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE CONSTRUCT DERIVES FROM PUBMED/NCBI ENTRY NP_ REMARK 999 216932.2, WHERE CYS204 WAS MUTATED TO AN ALA. THIS IS EIS FROM M. REMARK 999 TUBERCULOSIS H37RV, HENCE DIFFERENCES FROM P9WFK6, AN EIS HOMOLOG REMARK 999 FROM A DIFFERENT M. TUBERCULOSIS STRAIN. DBREF 5IV0 A -5 402 UNP P9WFK6 EIS_MYCTO 1 408 SEQADV 5IV0 MET A -25 UNP P9WFK6 INITIATING METHIONINE SEQADV 5IV0 GLY A -24 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 SER A -23 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 SER A -22 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -21 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -20 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -19 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -18 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -17 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -16 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 SER A -15 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 SER A -14 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 GLY A -13 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 LEU A -12 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 VAL A -11 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 PRO A -10 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 ARG A -9 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 GLY A -8 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 SER A -7 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 HIS A -6 UNP P9WFK6 EXPRESSION TAG SEQADV 5IV0 LEU A -4 UNP P9WFK6 PRO 2 SEE REMARK 999 SEQADV 5IV0 MET A 1 UNP P9WFK6 VAL 7 SEE REMARK 999 SEQADV 5IV0 ALA A 204 UNP P9WFK6 CYS 210 ENGINEERED MUTATION SEQRES 1 A 428 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 428 LEU VAL PRO ARG GLY SER HIS MET LEU GLN SER ASP SER SEQRES 3 A 428 MET THR VAL THR LEU CYS SER PRO THR GLU ASP ASP TRP SEQRES 4 A 428 PRO GLY MET PHE LEU LEU ALA ALA ALA SER PHE THR ASP SEQRES 5 A 428 PHE ILE GLY PRO GLU SER ALA THR ALA TRP ARG THR LEU SEQRES 6 A 428 VAL PRO THR ASP GLY ALA VAL VAL VAL ARG ASP GLY ALA SEQRES 7 A 428 GLY PRO GLY SER GLU VAL VAL GLY MET ALA LEU TYR MET SEQRES 8 A 428 ASP LEU ARG LEU THR VAL PRO GLY GLU VAL VAL LEU PRO SEQRES 9 A 428 THR ALA GLY LEU SER PHE VAL ALA VAL ALA PRO THR HIS SEQRES 10 A 428 ARG ARG ARG GLY LEU LEU ARG ALA MET CYS ALA GLU LEU SEQRES 11 A 428 HIS ARG ARG ILE ALA ASP SER GLY TYR PRO VAL ALA ALA SEQRES 12 A 428 LEU HIS ALA SER GLU GLY GLY ILE TYR GLY ARG PHE GLY SEQRES 13 A 428 TYR GLY PRO ALA THR THR LEU HIS GLU LEU THR VAL ASP SEQRES 14 A 428 ARG ARG PHE ALA ARG PHE HIS ALA ASP ALA PRO GLY GLY SEQRES 15 A 428 GLY LEU GLY GLY SER SER VAL ARG LEU VAL ARG PRO THR SEQRES 16 A 428 GLU HIS ARG GLY GLU PHE GLU ALA ILE TYR GLU ARG TRP SEQRES 17 A 428 ARG GLN GLN VAL PRO GLY GLY LEU LEU ARG PRO GLN VAL SEQRES 18 A 428 LEU TRP ASP GLU LEU LEU ALA GLU ALA LYS ALA ALA PRO SEQRES 19 A 428 GLY GLY ASP ARG GLU SER PHE ALA LEU LEU HIS PRO ASP SEQRES 20 A 428 GLY TYR ALA LEU TYR ARG VAL ASP ARG THR ASP LEU LYS SEQRES 21 A 428 LEU ALA ARG VAL SER GLU LEU ARG ALA VAL THR ALA ASP SEQRES 22 A 428 ALA HIS CYS ALA LEU TRP ARG ALA LEU ILE GLY LEU ASP SEQRES 23 A 428 SER MET GLU ARG ILE SER ILE ILE THR HIS PRO GLN ASP SEQRES 24 A 428 PRO LEU PRO HIS LEU LEU THR ASP THR ARG LEU ALA ARG SEQRES 25 A 428 THR THR TRP ARG GLN ASP GLY LEU TRP LEU ARG ILE MET SEQRES 26 A 428 ASN VAL PRO ALA ALA LEU GLU ALA ARG GLY TYR ALA HIS SEQRES 27 A 428 GLU VAL GLY GLU PHE SER THR VAL LEU GLU VAL SER ASP SEQRES 28 A 428 GLY GLY ARG PHE ALA LEU LYS ILE GLY ASP GLY ARG ALA SEQRES 29 A 428 ARG CYS THR PRO THR ASP ALA ALA ALA GLU ILE GLU MET SEQRES 30 A 428 ASP ARG ASP VAL LEU GLY SER LEU TYR LEU GLY ALA HIS SEQRES 31 A 428 ARG ALA SER THR LEU ALA ALA ALA ASN ARG LEU ARG THR SEQRES 32 A 428 LYS ASP SER GLN LEU LEU ARG ARG LEU ASP ALA ALA PHE SEQRES 33 A 428 ALA SER ASP VAL PRO VAL GLN THR ALA PHE GLU PHE HET COA A 501 22 HET 6E9 A 502 25 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HETNAM COA COENZYME A HETNAM 6E9 N-(3-METHOXYPHENYL)-N-METHYL-2,3-DIOXO-1,2,3,4- HETNAM 2 6E9 TETRAHYDROQUINOXALINE-6-SULFONAMIDE HETNAM CL CHLORIDE ION FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 6E9 C16 H15 N3 O5 S FORMUL 4 CL 3(CL 1-) FORMUL 7 HOH *237(H2 O) HELIX 1 AA1 THR A 9 ASP A 11 5 3 HELIX 2 AA2 ASP A 12 PHE A 24 1 13 HELIX 3 AA3 GLY A 29 ARG A 37 1 9 HELIX 4 AA4 THR A 38 VAL A 40 5 3 HELIX 5 AA5 PRO A 89 ARG A 92 5 4 HELIX 6 AA6 GLY A 95 GLY A 112 1 18 HELIX 7 AA7 TYR A 126 GLY A 130 5 5 HELIX 8 AA8 ARG A 167 GLU A 170 5 4 HELIX 9 AA9 HIS A 171 VAL A 186 1 16 HELIX 10 AB1 PRO A 193 ALA A 204 1 12 HELIX 11 AB2 THR A 245 GLY A 258 1 14 HELIX 12 AB3 PRO A 274 LEU A 279 5 6 HELIX 13 AB4 ASP A 281 ARG A 283 5 3 HELIX 14 AB5 ASN A 300 ARG A 308 1 9 HELIX 15 AB6 ASP A 352 LEU A 361 1 10 HELIX 16 AB7 ARG A 365 ALA A 372 1 8 HELIX 17 AB8 ASP A 379 ALA A 391 1 13 SHEET 1 AA1 7 THR A 4 CYS A 6 0 SHEET 2 AA1 7 ALA A 45 ARG A 49 -1 O VAL A 47 N CYS A 6 SHEET 3 AA1 7 VAL A 58 VAL A 71 -1 O ALA A 62 N VAL A 46 SHEET 4 AA1 7 VAL A 75 VAL A 87 -1 O LEU A 77 N LEU A 69 SHEET 5 AA1 7 VAL A 115 HIS A 119 1 O ALA A 117 N ALA A 80 SHEET 6 AA1 7 LEU A 294 ILE A 298 -1 O TRP A 295 N LEU A 118 SHEET 7 AA1 7 GLY A 132 PRO A 133 -1 N GLY A 132 O LEU A 296 SHEET 1 AA2 7 ARG A 164 VAL A 166 0 SHEET 2 AA2 7 SER A 214 HIS A 219 -1 O ALA A 216 N VAL A 166 SHEET 3 AA2 7 GLY A 222 VAL A 228 -1 O GLY A 222 N HIS A 219 SHEET 4 AA2 7 LEU A 235 ALA A 243 -1 O ARG A 237 N ARG A 227 SHEET 5 AA2 7 ARG A 264 THR A 269 1 O SER A 266 N VAL A 238 SHEET 6 AA2 7 THR A 136 ASP A 143 -1 N HIS A 138 O THR A 269 SHEET 7 AA2 7 ALA A 285 ASP A 292 -1 O GLN A 291 N LEU A 137 SHEET 1 AA3 5 ARG A 337 PRO A 342 0 SHEET 2 AA3 5 GLY A 327 GLY A 334 -1 N ALA A 330 O THR A 341 SHEET 3 AA3 5 PHE A 317 VAL A 323 -1 N LEU A 321 O PHE A 329 SHEET 4 AA3 5 ILE A 349 MET A 351 1 O ILE A 349 N GLU A 322 SHEET 5 AA3 5 LEU A 375 ARG A 376 -1 O ARG A 376 N GLU A 350 SITE 1 AC1 16 VAL A 85 VAL A 87 ARG A 92 ARG A 93 SITE 2 AC1 16 ARG A 94 GLY A 95 LEU A 96 LEU A 97 SITE 3 AC1 16 ARG A 98 HIS A 119 ILE A 125 TYR A 126 SITE 4 AC1 16 ASP A 260 6E9 A 502 HOH A 635 HOH A 674 SITE 1 AC2 11 PHE A 24 ASP A 26 PHE A 27 ILE A 28 SITE 2 AC2 11 ALA A 33 TRP A 36 SER A 83 PHE A 84 SITE 3 AC2 11 SER A 121 PHE A 402 COA A 501 SITE 1 AC3 5 ARG A 68 LEU A 69 THR A 70 ARG A 183 SITE 2 AC3 5 GLY A 189 SITE 1 AC4 2 THR A 269 THR A 398 CRYST1 174.800 174.800 121.985 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005721 0.003303 0.000000 0.00000 SCALE2 0.000000 0.006606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008198 0.00000