HEADER TRANSPORT PROTEIN 22-MAR-16 5IWK TITLE STRUCTURE OF TRANSIENT RECEPTOR POTENTIAL (TRP) CHANNEL TRPV6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V COMPND 3 MEMBER 6; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRPV6,CALCIUM TRANSPORT PROTEIN 1,CAT1,EPITHELIAL CALCIUM COMPND 6 CHANNEL 2,ECAC2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: TRPV6; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SAOTOME,A.K.SINGH,M.V.YELSHANSKAYA,A.I.SOBOLEVSKY REVDAT 6 27-SEP-23 5IWK 1 REMARK REVDAT 5 18-DEC-19 5IWK 1 REMARK LINK REVDAT 4 20-SEP-17 5IWK 1 REMARK REVDAT 3 06-JUL-16 5IWK 1 REMARK REVDAT 2 29-JUN-16 5IWK 1 JRNL REVDAT 1 15-JUN-16 5IWK 0 JRNL AUTH K.SAOTOME,A.K.SINGH,M.V.YELSHANSKAYA,A.I.SOBOLEVSKY JRNL TITL CRYSTAL STRUCTURE OF THE EPITHELIAL CALCIUM CHANNEL TRPV6. JRNL REF NATURE V. 534 506 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27296226 JRNL DOI 10.1038/NATURE17975 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 18529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4698 - 6.2086 0.93 2602 137 0.2458 0.2588 REMARK 3 2 6.2086 - 4.9294 0.96 2526 133 0.2566 0.3107 REMARK 3 3 4.9294 - 4.3067 0.97 2523 132 0.2228 0.2539 REMARK 3 4 4.3067 - 3.9131 0.97 2506 133 0.2666 0.2809 REMARK 3 5 3.9131 - 3.6327 0.98 2523 132 0.3013 0.3274 REMARK 3 6 3.6327 - 3.4186 0.98 2525 133 0.3486 0.4225 REMARK 3 7 3.4186 - 3.2474 0.94 2397 127 0.4073 0.3780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4849 REMARK 3 ANGLE : 1.208 6587 REMARK 3 CHIRALITY : 0.056 751 REMARK 3 PLANARITY : 0.010 835 REMARK 3 DIHEDRAL : 15.436 1761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18531 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.247 REMARK 200 RESOLUTION RANGE LOW (A) : 49.464 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 1.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-24% PEG 350MME, 50 MM NACL, 50 MM REMARK 280 TRIS-HCL PH 8.0-8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.90900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.90900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.90900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.90900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.90900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.90900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.90900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.90900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 108630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -293.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -143.81800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -71.90900 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -71.90900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 71.90900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -71.90900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 TRP A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 CYS A 14 REMARK 465 LEU A 15 REMARK 465 TRP A 16 REMARK 465 ASN A 17 REMARK 465 LYS A 18 REMARK 465 PHE A 19 REMARK 465 CYS A 20 REMARK 465 ARG A 21 REMARK 465 TRP A 22 REMARK 465 PHE A 23 REMARK 465 HIS A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 LEU A 409 REMARK 465 GLY A 410 REMARK 465 VAL A 411 REMARK 465 THR A 412 REMARK 465 ARG A 413 REMARK 465 PHE A 414 REMARK 465 PHE A 415 REMARK 465 GLY A 416 REMARK 465 PHE A 471 REMARK 465 GLN A 472 REMARK 465 MET A 473 REMARK 465 LEU A 474 REMARK 465 GLY A 475 REMARK 465 PRO A 476 REMARK 465 PHE A 477 REMARK 465 THR A 478 REMARK 465 ILE A 479 REMARK 465 LEU A 638 REMARK 465 ASN A 639 REMARK 465 ARG A 640 REMARK 465 GLN A 641 REMARK 465 ARG A 642 REMARK 465 ILE A 643 REMARK 465 ARG A 644 REMARK 465 ARG A 645 REMARK 465 TYR A 646 REMARK 465 ALA A 647 REMARK 465 GLN A 648 REMARK 465 ALA A 649 REMARK 465 PHE A 650 REMARK 465 GLN A 651 REMARK 465 GLN A 652 REMARK 465 GLN A 653 REMARK 465 ASP A 654 REMARK 465 ASP A 655 REMARK 465 LEU A 656 REMARK 465 TYR A 657 REMARK 465 SER A 658 REMARK 465 GLU A 659 REMARK 465 ASP A 660 REMARK 465 LEU A 661 REMARK 465 GLU A 662 REMARK 465 LYS A 663 REMARK 465 ASP A 664 REMARK 465 SER A 665 REMARK 465 GLY A 666 REMARK 465 GLU A 667 REMARK 465 LYS A 668 REMARK 465 LEU A 669 REMARK 465 VAL A 670 REMARK 465 PRO A 671 REMARK 465 ARG A 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 370 CG CD CE NZ REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 MET A 480 CG SD CE REMARK 470 ILE A 481 CG1 CG2 CD1 REMARK 470 ASP A 637 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 64 CA GLY A 69 1.32 REMARK 500 CA GLY A 332 CE2 PHE A 467 1.53 REMARK 500 O SER A 284 OG SER A 285 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 59 CE1 PHE A 67 8556 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 353 CD PRO A 353 N -0.105 REMARK 500 GLY A 625 N GLY A 625 CA -0.424 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 286 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LEU A 372 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO A 379 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 422 N - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 TYR A 622 N - CA - C ANGL. DEV. = 23.2 DEGREES REMARK 500 GLY A 625 N - CA - C ANGL. DEV. = 63.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 73 21.88 -79.10 REMARK 500 ALA A 102 85.50 -153.64 REMARK 500 VAL A 106 -39.67 -37.90 REMARK 500 LEU A 205 31.04 -89.24 REMARK 500 THR A 280 -70.87 -103.00 REMARK 500 SER A 284 173.15 -54.72 REMARK 500 SER A 285 12.13 82.85 REMARK 500 ASP A 288 10.69 -154.51 REMARK 500 TYR A 323 -49.59 69.83 REMARK 500 ARG A 362 74.53 50.02 REMARK 500 GLN A 368 62.28 -102.54 REMARK 500 LEU A 420 -59.66 -140.51 REMARK 500 PRO A 423 30.64 -83.22 REMARK 500 LEU A 443 -6.53 64.05 REMARK 500 LEU A 519 69.45 60.89 REMARK 500 PRO A 543 108.57 -51.81 REMARK 500 TRP A 582 -178.13 -170.90 REMARK 500 TRP A 612 75.12 57.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 621 TYR A 622 42.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 541 OD1 REMARK 620 2 ASP A 541 OD2 46.8 REMARK 620 3 ASP A 541 OD1 0.0 46.8 REMARK 620 4 ASP A 541 OD2 46.8 0.0 46.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTB A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IWR RELATED DB: PDB REMARK 900 RELATED ID: 5IWP RELATED DB: PDB REMARK 900 RELATED ID: 5IWT RELATED DB: PDB DBREF 5IWK A 1 669 UNP Q9R186 TRPV6_RAT 41 709 SEQADV 5IWK TYR A 62 UNP Q9R186 ILE 102 ENGINEERED MUTATION SEQADV 5IWK ASN A 92 UNP Q9R186 LEU 132 ENGINEERED MUTATION SEQADV 5IWK GLN A 96 UNP Q9R186 MET 136 ENGINEERED MUTATION SEQADV 5IWK GLN A 495 UNP Q9R186 LEU 535 ENGINEERED MUTATION SEQADV 5IWK VAL A 670 UNP Q9R186 EXPRESSION TAG SEQADV 5IWK PRO A 671 UNP Q9R186 EXPRESSION TAG SEQADV 5IWK ARG A 672 UNP Q9R186 EXPRESSION TAG SEQRES 1 A 672 MET GLY TRP SER LEU PRO LYS GLU LYS GLY LEU ILE LEU SEQRES 2 A 672 CYS LEU TRP ASN LYS PHE CYS ARG TRP PHE HIS ARG ARG SEQRES 3 A 672 GLU SER TRP ALA GLN SER ARG ASP GLU GLN ASN LEU LEU SEQRES 4 A 672 GLN GLN LYS ARG ILE TRP GLU SER PRO LEU LEU LEU ALA SEQRES 5 A 672 ALA LYS GLU ASN ASN VAL GLN ALA LEU TYR LYS LEU LEU SEQRES 6 A 672 LYS PHE GLU GLY CYS GLU VAL HIS GLN LYS GLY ALA MET SEQRES 7 A 672 GLY GLU THR ALA LEU HIS ILE ALA ALA LEU TYR ASP ASN SEQRES 8 A 672 ASN GLU ALA ALA GLN VAL LEU MET GLU ALA ALA PRO GLU SEQRES 9 A 672 LEU VAL PHE GLU PRO MET THR SER GLU LEU TYR GLU GLY SEQRES 10 A 672 GLN THR ALA LEU HIS ILE ALA VAL ILE ASN GLN ASN VAL SEQRES 11 A 672 ASN LEU VAL ARG ALA LEU LEU ALA ARG GLY ALA SER VAL SEQRES 12 A 672 SER ALA ARG ALA THR GLY SER VAL PHE HIS TYR ARG PRO SEQRES 13 A 672 HIS ASN LEU ILE TYR TYR GLY GLU HIS PRO LEU SER PHE SEQRES 14 A 672 ALA ALA CYS VAL GLY SER GLU GLU ILE VAL ARG LEU LEU SEQRES 15 A 672 ILE GLU HIS GLY ALA ASP ILE ARG ALA GLN ASP SER LEU SEQRES 16 A 672 GLY ASN THR VAL LEU HIS ILE LEU ILE LEU GLN PRO ASN SEQRES 17 A 672 LYS THR PHE ALA CYS GLN MET TYR ASN LEU LEU LEU SER SEQRES 18 A 672 TYR ASP GLY GLY ASP HIS LEU LYS SER LEU GLU LEU VAL SEQRES 19 A 672 PRO ASN ASN GLN GLY LEU THR PRO PHE LYS LEU ALA GLY SEQRES 20 A 672 VAL GLU GLY ASN ILE VAL MET PHE GLN HIS LEU MET GLN SEQRES 21 A 672 LYS ARG LYS HIS ILE GLN TRP THR TYR GLY PRO LEU THR SEQRES 22 A 672 SER THR LEU TYR ASP LEU THR GLU ILE ASP SER SER GLY SEQRES 23 A 672 ASP ASP GLN SER LEU LEU GLU LEU ILE VAL THR THR LYS SEQRES 24 A 672 LYS ARG GLU ALA ARG GLN ILE LEU ASP GLN THR PRO VAL SEQRES 25 A 672 LYS GLU LEU VAL SER LEU LYS TRP LYS ARG TYR GLY ARG SEQRES 26 A 672 PRO TYR PHE CYS VAL LEU GLY ALA ILE TYR VAL LEU TYR SEQRES 27 A 672 ILE ILE CYS PHE THR MET CYS CYS VAL TYR ARG PRO LEU SEQRES 28 A 672 LYS PRO ARG ILE THR ASN ARG THR ASN PRO ARG ASP ASN SEQRES 29 A 672 THR LEU LEU GLN GLN LYS LEU LEU GLN GLU ALA TYR VAL SEQRES 30 A 672 THR PRO LYS ASP ASP LEU ARG LEU VAL GLY GLU LEU VAL SEQRES 31 A 672 SER ILE VAL GLY ALA VAL ILE ILE LEU LEU VAL GLU ILE SEQRES 32 A 672 PRO ASP ILE PHE ARG LEU GLY VAL THR ARG PHE PHE GLY SEQRES 33 A 672 GLN THR ILE LEU GLY GLY PRO PHE HIS VAL ILE ILE VAL SEQRES 34 A 672 THR TYR ALA PHE MET VAL LEU VAL THR MET VAL MET ARG SEQRES 35 A 672 LEU THR ASN SER ASP GLY GLU VAL VAL PRO MET SER PHE SEQRES 36 A 672 ALA LEU VAL LEU GLY TRP CYS ASN VAL MET TYR PHE ALA SEQRES 37 A 672 ARG GLY PHE GLN MET LEU GLY PRO PHE THR ILE MET ILE SEQRES 38 A 672 GLN LYS MET ILE PHE GLY ASP LEU MET ARG PHE CYS TRP SEQRES 39 A 672 GLN MET ALA VAL VAL ILE LEU GLY PHE ALA SER ALA PHE SEQRES 40 A 672 TYR ILE ILE PHE GLN THR GLU ASP PRO ASP GLU LEU GLY SEQRES 41 A 672 HIS PHE TYR ASP TYR PRO MET ALA LEU PHE SER THR PHE SEQRES 42 A 672 GLU LEU PHE LEU THR ILE ILE ASP GLY PRO ALA ASN TYR SEQRES 43 A 672 ASP VAL ASP LEU PRO PHE MET TYR SER ILE THR TYR ALA SEQRES 44 A 672 ALA PHE ALA ILE ILE ALA THR LEU LEU MET LEU ASN LEU SEQRES 45 A 672 LEU ILE ALA MET MET GLY ASP THR HIS TRP ARG VAL ALA SEQRES 46 A 672 HIS GLU ARG ASP GLU LEU TRP ARG ALA GLN VAL VAL ALA SEQRES 47 A 672 THR THR VAL MET LEU GLU ARG LYS LEU PRO ARG CYS LEU SEQRES 48 A 672 TRP PRO ARG SER GLY ILE CYS GLY ARG GLU TYR GLY LEU SEQRES 49 A 672 GLY ASP ARG TRP PHE LEU ARG VAL GLU ASP ARG GLN ASP SEQRES 50 A 672 LEU ASN ARG GLN ARG ILE ARG ARG TYR ALA GLN ALA PHE SEQRES 51 A 672 GLN GLN GLN ASP ASP LEU TYR SER GLU ASP LEU GLU LYS SEQRES 52 A 672 ASP SER GLY GLU LYS LEU VAL PRO ARG HET CA A 701 1 HET DTB A 702 15 HETNAM CA CALCIUM ION HETNAM DTB 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID HETSYN DTB D-DESTHIOBIOTIN FORMUL 2 CA CA 2+ FORMUL 3 DTB C10 H18 N2 O3 HELIX 1 AA1 SER A 28 SER A 47 1 20 HELIX 2 AA2 SER A 47 ASN A 56 1 10 HELIX 3 AA3 ASN A 57 LYS A 66 1 10 HELIX 4 AA4 THR A 81 TYR A 89 1 9 HELIX 5 AA5 ASN A 91 ALA A 102 1 12 HELIX 6 AA6 GLU A 104 GLU A 108 5 5 HELIX 7 AA7 THR A 119 ASN A 127 1 9 HELIX 8 AA8 ASN A 129 ARG A 139 1 11 HELIX 9 AA9 HIS A 165 GLY A 174 1 10 HELIX 10 AB1 SER A 175 HIS A 185 1 11 HELIX 11 AB2 THR A 198 LEU A 205 1 8 HELIX 12 AB3 ASN A 208 TYR A 222 1 15 HELIX 13 AB4 THR A 241 GLU A 249 1 9 HELIX 14 AB5 ASN A 251 LYS A 261 1 11 HELIX 15 AB6 SER A 290 THR A 298 1 9 HELIX 16 AB7 LYS A 300 LEU A 307 5 8 HELIX 17 AB8 VAL A 312 ARG A 322 1 11 HELIX 18 AB9 TYR A 323 TYR A 348 1 26 HELIX 19 AC1 THR A 356 ASN A 360 5 5 HELIX 20 AC2 ASP A 381 PHE A 407 1 27 HELIX 21 AC3 PRO A 423 ARG A 442 1 20 HELIX 22 AC4 SER A 446 GLY A 448 5 3 HELIX 23 AC5 GLU A 449 ASN A 463 1 15 HELIX 24 AC6 TYR A 466 GLY A 470 5 5 HELIX 25 AC7 ILE A 481 THR A 513 1 33 HELIX 26 AC8 ASP A 524 LEU A 537 1 14 HELIX 27 AC9 MET A 553 GLY A 578 1 26 HELIX 28 AD1 VAL A 584 LEU A 607 1 24 SHEET 1 AA1 4 LYS A 263 TYR A 269 0 SHEET 2 AA1 4 LEU A 272 TYR A 277 -1 O LEU A 276 N HIS A 264 SHEET 3 AA1 4 TRP A 628 ARG A 635 -1 O VAL A 632 N THR A 275 SHEET 4 AA1 4 ILE A 617 CYS A 618 -1 N ILE A 617 O PHE A 629 LINK OD1 ASP A 541 CA CA A 701 1555 1555 2.68 LINK OD2 ASP A 541 CA CA A 701 1555 1555 2.78 LINK OD1 ASP A 541 CA CA A 701 1555 2545 2.68 LINK OD2 ASP A 541 CA CA A 701 1555 2545 2.78 SITE 1 AC1 1 ASP A 541 SITE 1 AC2 8 GLN A 40 LEU A 88 TYR A 115 VAL A 151 SITE 2 AC2 8 ASN A 158 TRP A 267 TYR A 269 LEU A 272 CRYST1 143.818 143.818 113.224 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006953 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008832 0.00000