HEADER LYASE 23-MAR-16 5IWX TITLE CRYSTAL STRUCTURE OF 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE TITLE 2 SYNTHASE FROM BACILLUS SUBTITIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: MECPS; COMPND 5 EC: 4.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: ISPF, YACN, BSU00910; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.C.LIU,Y.JIN,G.G.WANG REVDAT 3 08-NOV-23 5IWX 1 REMARK LINK REVDAT 2 14-FEB-18 5IWX 1 JRNL REVDAT 1 29-MAR-17 5IWX 0 JRNL AUTH Z.C.LIU,Y.JIN,W.F.LIU,Y.TAO,G.G.WANG JRNL TITL CRYSTAL STRUCTURE OF ISPF FROM BACILLUS SUBTILIS AND ABSENCE JRNL TITL 2 OF PROTEIN COMPLEX ASSEMBLY AMONG ISPD/ISPE/ISPF ENZYMES IN JRNL TITL 3 THE MEP PATHWAY. JRNL REF BIOSCI. REP. 2018 JRNL REFN ISSN 1573-4935 JRNL PMID 29335298 JRNL DOI 10.1042/BSR20171370 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 53728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3840 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7156 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7090 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9650 ; 1.570 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16342 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 915 ; 6.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 300 ;39.430 ;25.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1275 ;15.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;25.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1097 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8055 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1510 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3687 ; 2.930 ; 3.522 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3686 ; 2.929 ; 3.521 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4593 ; 4.493 ; 5.264 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4594 ; 4.493 ; 5.264 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3469 ; 3.706 ; 4.180 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3469 ; 3.706 ; 4.180 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5057 ; 5.946 ; 6.043 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7875 ; 7.858 ;28.596 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7801 ; 7.837 ;28.502 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM TRIS-HCL PH 8.0, 0.1M NACL, 0.1M REMARK 280 MAGNESIUM FORMATE DIHYDRATE, 12-15% W/V PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.64750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 136 REMARK 465 LYS B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 PHE B 140 REMARK 465 THR B 141 REMARK 465 GLY B 142 REMARK 465 ARG B 143 REMARK 465 ASP D 66 REMARK 465 PRO D 67 REMARK 465 GLU D 68 REMARK 465 PHE D 69 REMARK 465 LYS D 70 REMARK 465 ASP D 71 REMARK 465 ALA D 72 REMARK 465 ASP E 64 REMARK 465 THR E 65 REMARK 465 ASP E 66 REMARK 465 PRO E 67 REMARK 465 GLU E 68 REMARK 465 PHE E 69 REMARK 465 LYS E 70 REMARK 465 ASP E 71 REMARK 465 ALA E 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS C 97 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 93.41 -66.87 REMARK 500 ASP A 71 29.92 49.25 REMARK 500 ARG A 143 44.30 -101.88 REMARK 500 ALA A 144 49.13 30.62 REMARK 500 ASP C 39 93.87 -65.17 REMARK 500 TYR D 28 143.90 -174.45 REMARK 500 SER D 36 -147.66 -87.63 REMARK 500 SER E 36 -134.25 -109.12 REMARK 500 LYS E 137 -3.78 79.46 REMARK 500 SER F 36 -138.05 50.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD2 REMARK 620 2 HOH A 306 O 85.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD2 REMARK 620 2 HOH B 306 O 84.7 REMARK 620 3 HOH B 326 O 90.9 83.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 9 OD2 REMARK 620 2 HOH C 304 O 82.6 REMARK 620 3 HOH C 337 O 153.3 72.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 9 OD2 REMARK 620 2 HOH D 332 O 90.7 REMARK 620 3 HOH D 336 O 103.5 72.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 9 OD2 REMARK 620 2 HOH E 302 O 87.5 REMARK 620 3 HOH E 332 O 92.6 72.4 REMARK 620 4 HOH E 340 O 150.2 63.2 84.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 9 OD2 REMARK 620 2 HOH F 303 O 84.5 REMARK 620 3 HOH F 332 O 88.7 94.8 REMARK 620 4 HOH F 334 O 144.0 59.7 97.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IWY RELATED DB: PDB DBREF 5IWX A 1 158 UNP Q06756 ISPF_BACSU 1 158 DBREF 5IWX B 1 158 UNP Q06756 ISPF_BACSU 1 158 DBREF 5IWX C 1 158 UNP Q06756 ISPF_BACSU 1 158 DBREF 5IWX D 1 158 UNP Q06756 ISPF_BACSU 1 158 DBREF 5IWX E 1 158 UNP Q06756 ISPF_BACSU 1 158 DBREF 5IWX F 1 158 UNP Q06756 ISPF_BACSU 1 158 SEQRES 1 A 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 A 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 A 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 A 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 A 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 A 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 A 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 A 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 A 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 A 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 A 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 A 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 A 158 LYS GLY SEQRES 1 B 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 B 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 B 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 B 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 B 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 B 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 B 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 B 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 B 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 B 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 B 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 B 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 B 158 LYS GLY SEQRES 1 C 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 C 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 C 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 C 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 C 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 C 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 C 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 C 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 C 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 C 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 C 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 C 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 C 158 LYS GLY SEQRES 1 D 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 D 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 D 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 D 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 D 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 D 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 D 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 D 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 D 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 D 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 D 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 D 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 D 158 LYS GLY SEQRES 1 E 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 E 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 E 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 E 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 E 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 E 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 E 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 E 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 E 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 E 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 E 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 E 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 E 158 LYS GLY SEQRES 1 F 158 MET PHE ARG ILE GLY GLN GLY PHE ASP VAL HIS GLN LEU SEQRES 2 F 158 VAL GLU GLY ARG PRO LEU ILE ILE GLY GLY ILE GLU ILE SEQRES 3 F 158 PRO TYR GLU LYS GLY LEU LEU GLY HIS SER ASP ALA ASP SEQRES 4 F 158 VAL LEU LEU HIS THR VAL ALA ASP ALA CYS LEU GLY ALA SEQRES 5 F 158 VAL GLY GLU GLY ASP ILE GLY LYS HIS PHE PRO ASP THR SEQRES 6 F 158 ASP PRO GLU PHE LYS ASP ALA ASP SER PHE LYS LEU LEU SEQRES 7 F 158 GLN HIS VAL TRP GLY ILE VAL LYS GLN LYS GLY TYR VAL SEQRES 8 F 158 LEU GLY ASN ILE ASP CYS THR ILE ILE ALA GLN LYS PRO SEQRES 9 F 158 LYS MET LEU PRO TYR ILE GLU ASP MET ARG LYS ARG ILE SEQRES 10 F 158 ALA GLU GLY LEU GLU ALA ASP VAL SER GLN VAL ASN VAL SEQRES 11 F 158 LYS ALA THR THR THR GLU LYS LEU GLY PHE THR GLY ARG SEQRES 12 F 158 ALA GLU GLY ILE ALA ALA GLN ALA THR VAL LEU ILE GLN SEQRES 13 F 158 LYS GLY HET MG A 201 1 HET MG B 201 1 HET MG C 201 1 HET MG D 201 1 HET MG E 201 1 HET MG F 201 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG 6(MG 2+) FORMUL 13 HOH *250(H2 O) HELIX 1 AA1 ASP A 39 VAL A 53 1 15 HELIX 2 AA2 ASP A 57 PHE A 62 1 6 HELIX 3 AA3 ASP A 73 LYS A 88 1 16 HELIX 4 AA4 TYR A 109 LEU A 121 1 13 HELIX 5 AA5 ASP A 124 SER A 126 5 3 HELIX 6 AA6 LEU A 138 ARG A 143 1 6 HELIX 7 AA7 ASP B 39 VAL B 53 1 15 HELIX 8 AA8 ASP B 57 PHE B 62 1 6 HELIX 9 AA9 ASP B 66 LYS B 70 5 5 HELIX 10 AB1 ASP B 73 LYS B 88 1 16 HELIX 11 AB2 MET B 106 PRO B 108 5 3 HELIX 12 AB3 TYR B 109 LEU B 121 1 13 HELIX 13 AB4 ASP B 124 SER B 126 5 3 HELIX 14 AB5 ASP C 39 VAL C 53 1 15 HELIX 15 AB6 ASP C 57 PHE C 62 1 6 HELIX 16 AB7 ASP C 66 LYS C 70 5 5 HELIX 17 AB8 ASP C 73 GLY C 89 1 17 HELIX 18 AB9 MET C 106 PRO C 108 5 3 HELIX 19 AC1 TYR C 109 LEU C 121 1 13 HELIX 20 AC2 ASP C 124 SER C 126 5 3 HELIX 21 AC3 LEU C 138 ARG C 143 1 6 HELIX 22 AC4 ASP D 39 VAL D 53 1 15 HELIX 23 AC5 ASP D 57 PHE D 62 1 6 HELIX 24 AC6 SER D 74 LYS D 88 1 15 HELIX 25 AC7 MET D 106 PRO D 108 5 3 HELIX 26 AC8 TYR D 109 LEU D 121 1 13 HELIX 27 AC9 ASP D 124 SER D 126 5 3 HELIX 28 AD1 LEU D 138 ARG D 143 1 6 HELIX 29 AD2 ASP E 39 VAL E 53 1 15 HELIX 30 AD3 ASP E 57 HIS E 61 5 5 HELIX 31 AD4 SER E 74 LYS E 88 1 15 HELIX 32 AD5 MET E 106 PRO E 108 5 3 HELIX 33 AD6 TYR E 109 LEU E 121 1 13 HELIX 34 AD7 ASP E 124 SER E 126 5 3 HELIX 35 AD8 LEU E 138 ARG E 143 1 6 HELIX 36 AD9 ASP F 39 VAL F 53 1 15 HELIX 37 AE1 ASP F 57 HIS F 61 5 5 HELIX 38 AE2 ASP F 73 LYS F 88 1 16 HELIX 39 AE3 MET F 106 PRO F 108 5 3 HELIX 40 AE4 TYR F 109 LEU F 121 1 13 HELIX 41 AE5 ASP F 124 SER F 126 5 3 HELIX 42 AE6 LEU F 138 ARG F 143 1 6 SHEET 1 AA1 5 LYS A 30 LEU A 32 0 SHEET 2 AA1 5 PHE A 2 GLU A 15 -1 N VAL A 14 O GLY A 31 SHEET 3 AA1 5 GLY A 146 LYS A 157 -1 O ILE A 147 N HIS A 11 SHEET 4 AA1 5 TYR A 90 ILE A 100 -1 N ILE A 100 O ALA A 148 SHEET 5 AA1 5 VAL A 128 THR A 133 1 O THR A 133 N ILE A 99 SHEET 1 AA2 2 LEU A 19 ILE A 21 0 SHEET 2 AA2 2 ILE A 24 ILE A 26 -1 O ILE A 26 N LEU A 19 SHEET 1 AA3 5 LYS B 30 LEU B 32 0 SHEET 2 AA3 5 PHE B 2 GLU B 15 -1 N VAL B 14 O GLY B 31 SHEET 3 AA3 5 GLY B 146 LYS B 157 -1 O ALA B 151 N GLY B 7 SHEET 4 AA3 5 TYR B 90 ILE B 100 -1 N VAL B 91 O GLN B 156 SHEET 5 AA3 5 VAL B 128 THR B 133 1 O LYS B 131 N ILE B 99 SHEET 1 AA4 2 LEU B 19 ILE B 21 0 SHEET 2 AA4 2 ILE B 24 ILE B 26 -1 O ILE B 26 N LEU B 19 SHEET 1 AA5 5 LYS C 30 LEU C 32 0 SHEET 2 AA5 5 PHE C 2 GLU C 15 -1 N VAL C 14 O GLY C 31 SHEET 3 AA5 5 GLY C 146 LYS C 157 -1 O ILE C 155 N ARG C 3 SHEET 4 AA5 5 TYR C 90 ILE C 100 -1 N ILE C 100 O ALA C 148 SHEET 5 AA5 5 VAL C 128 THR C 133 1 O THR C 133 N ILE C 99 SHEET 1 AA6 2 LEU C 19 ILE C 21 0 SHEET 2 AA6 2 ILE C 24 ILE C 26 -1 O ILE C 26 N LEU C 19 SHEET 1 AA7 5 LYS D 30 LEU D 32 0 SHEET 2 AA7 5 PHE D 2 GLU D 15 -1 N VAL D 14 O GLY D 31 SHEET 3 AA7 5 GLY D 146 LYS D 157 -1 O ALA D 151 N GLY D 7 SHEET 4 AA7 5 TYR D 90 ILE D 100 -1 N ILE D 100 O ALA D 148 SHEET 5 AA7 5 VAL D 128 THR D 133 1 O THR D 133 N ILE D 99 SHEET 1 AA8 2 LEU D 19 ILE D 21 0 SHEET 2 AA8 2 ILE D 24 ILE D 26 -1 O ILE D 26 N LEU D 19 SHEET 1 AA9 5 LYS E 30 LEU E 32 0 SHEET 2 AA9 5 PHE E 2 GLU E 15 -1 N VAL E 14 O GLY E 31 SHEET 3 AA9 5 GLY E 146 LYS E 157 -1 O ALA E 151 N GLY E 7 SHEET 4 AA9 5 TYR E 90 ILE E 100 -1 N ILE E 100 O ALA E 148 SHEET 5 AA9 5 VAL E 128 THR E 133 1 O THR E 133 N ILE E 99 SHEET 1 AB1 2 LEU E 19 ILE E 21 0 SHEET 2 AB1 2 ILE E 24 ILE E 26 -1 O ILE E 26 N LEU E 19 SHEET 1 AB2 5 LYS F 30 LEU F 32 0 SHEET 2 AB2 5 PHE F 2 GLU F 15 -1 N VAL F 14 O GLY F 31 SHEET 3 AB2 5 GLY F 146 LYS F 157 -1 O ALA F 151 N GLY F 7 SHEET 4 AB2 5 TYR F 90 ILE F 100 -1 N ILE F 100 O ALA F 148 SHEET 5 AB2 5 VAL F 128 THR F 133 1 O THR F 133 N ILE F 99 SHEET 1 AB3 2 LEU F 19 ILE F 21 0 SHEET 2 AB3 2 ILE F 24 ILE F 26 -1 O ILE F 26 N LEU F 19 LINK OD2 ASP A 9 MG MG A 201 1555 1555 2.14 LINK MG MG A 201 O HOH A 306 1555 1555 1.98 LINK OD2 ASP B 9 MG MG B 201 1555 1555 2.02 LINK MG MG B 201 O HOH B 306 1555 1555 1.84 LINK MG MG B 201 O HOH B 326 1555 1555 2.16 LINK OD2 ASP C 9 MG MG C 201 1555 1555 2.13 LINK MG MG C 201 O HOH C 304 1555 1555 2.30 LINK MG MG C 201 O HOH C 337 1555 1555 2.20 LINK OD2 ASP D 9 MG MG D 201 1555 1555 2.01 LINK MG MG D 201 O HOH D 332 1555 1555 2.14 LINK MG MG D 201 O HOH D 336 1555 1555 2.05 LINK OD2 ASP E 9 MG MG E 201 1555 1555 2.07 LINK MG MG E 201 O HOH E 302 1555 1555 2.25 LINK MG MG E 201 O HOH E 332 1555 1555 1.84 LINK MG MG E 201 O HOH E 340 1555 1555 2.37 LINK OD2 ASP F 9 MG MG F 201 1555 1555 2.15 LINK MG MG F 201 O HOH F 303 1555 1555 2.58 LINK MG MG F 201 O HOH F 332 1555 1555 2.18 LINK MG MG F 201 O HOH F 334 1555 1555 2.23 CISPEP 1 LYS A 103 PRO A 104 0 -5.92 CISPEP 2 LYS B 103 PRO B 104 0 -0.60 CISPEP 3 LYS C 103 PRO C 104 0 -5.54 CISPEP 4 LYS D 103 PRO D 104 0 -1.24 CISPEP 5 LYS E 103 PRO E 104 0 5.70 CISPEP 6 LYS F 103 PRO F 104 0 -5.76 SITE 1 AC1 4 ASP A 9 HIS A 11 HIS A 43 HOH A 306 SITE 1 AC2 5 ASP B 9 HIS B 11 HIS B 43 HOH B 306 SITE 2 AC2 5 HOH B 326 SITE 1 AC3 5 ASP C 9 HIS C 11 HIS C 43 HOH C 304 SITE 2 AC3 5 HOH C 337 SITE 1 AC4 5 ASP D 9 HIS D 11 HIS D 43 HOH D 332 SITE 2 AC4 5 HOH D 336 SITE 1 AC5 6 ASP E 9 HIS E 11 HIS E 43 HOH E 302 SITE 2 AC5 6 HOH E 332 HOH E 340 SITE 1 AC6 6 ASP F 9 HIS F 11 HIS F 43 HOH F 303 SITE 2 AC6 6 HOH F 332 HOH F 334 CRYST1 56.964 89.295 84.708 90.00 100.85 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017555 0.000000 0.003365 0.00000 SCALE2 0.000000 0.011199 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012020 0.00000