HEADER DNA 23-MAR-16 5IX7 TITLE CRYSTAL STRUCTURE OF METALLO-DNA NANOWIRE WITH INFINITE ONE- TITLE 2 DIMENSIONAL SILVER ARRAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*AP*CP*TP*(CBR)P*GP*AP*CP*TP*CP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DNA, NANOWIRE, X-RAY ANALYSIS, METALLO-BASE PAIRS, SILVER EXPDTA X-RAY DIFFRACTION AUTHOR J.KONDO,Y.TADA,T.DAIRAKU,Y.HATTORI,H.SANEYOSHI,A.ONO,Y.TANAKA REVDAT 3 20-MAR-24 5IX7 1 LINK REVDAT 2 11-OCT-17 5IX7 1 JRNL REVDAT 1 05-JUL-17 5IX7 0 JRNL AUTH J.KONDO,Y.TADA,T.DAIRAKU,Y.HATTORI,H.SANEYOSHI,A.ONO, JRNL AUTH 2 Y.TANAKA JRNL TITL A METALLO-DNA NANOWIRE WITH UNINTERRUPTED ONE-DIMENSIONAL JRNL TITL 2 SILVER ARRAY JRNL REF NAT CHEM V. 9 956 2017 JRNL REFN ESSN 1755-4349 JRNL PMID 28937663 JRNL DOI 10.1038/NCHEM.2808 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1152 - 2.9059 1.00 1202 125 0.1690 0.1532 REMARK 3 2 2.9059 - 2.3069 1.00 1156 167 0.1361 0.1610 REMARK 3 3 2.3069 - 2.0154 1.00 1192 124 0.1524 0.1768 REMARK 3 4 2.0154 - 1.8312 1.00 1236 127 0.1741 0.2409 REMARK 3 5 1.8312 - 1.7000 1.00 1187 106 0.1648 0.2046 REMARK 3 6 1.7000 - 1.5998 1.00 1220 114 0.1761 0.2356 REMARK 3 7 1.5998 - 1.5197 1.00 1203 126 0.1997 0.2294 REMARK 3 8 1.5197 - 1.4535 1.00 1177 140 0.1873 0.2248 REMARK 3 9 1.4535 - 1.3976 1.00 1169 166 0.1939 0.2784 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.05 REMARK 3 K_SOL : 0.54 REMARK 3 B_SOL : 44.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58210 REMARK 3 B22 (A**2) : 0.58210 REMARK 3 B33 (A**2) : -1.16430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 269 REMARK 3 ANGLE : 1.310 411 REMARK 3 CHIRALITY : 0.088 46 REMARK 3 PLANARITY : 0.015 12 REMARK 3 DIHEDRAL : 33.488 125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN F_PLUS/MINUS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5IX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11942 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 26.111 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.02 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.27 REMARK 200 R MERGE FOR SHELL (I) : 0.28400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS (PH 7.0), SPERMINE, MPD, KNO3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.21000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.68333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.73667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.47333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.94667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 98.68333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.21000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.73667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 19.73667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 AG AG A 101 LIES ON A SPECIAL POSITION. REMARK 375 AG AG A 106 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 219 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 232 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 237 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 248 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 256 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 261 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 268 LIES ON A SPECIAL POSITION. REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 272 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 273 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 274 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 275 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 276 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 277 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 278 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A 279 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A 280 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH A 281 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A 282 DISTANCE = 9.25 ANGSTROMS REMARK 525 HOH A 283 DISTANCE = 10.08 ANGSTROMS REMARK 525 HOH A 284 DISTANCE = 10.31 ANGSTROMS REMARK 525 HOH A 285 DISTANCE = 10.55 ANGSTROMS REMARK 525 HOH A 286 DISTANCE = 10.89 ANGSTROMS REMARK 525 HOH A 287 DISTANCE = 11.24 ANGSTROMS REMARK 525 HOH A 288 DISTANCE = 11.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 106 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 N7 REMARK 620 2 DG A 1 N7 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 N1 REMARK 620 2 DC A 12 N3 61.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 N3 REMARK 620 2 DC A 11 N3 67.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 108 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 O2 REMARK 620 2 DT A 5 O2 83.8 REMARK 620 3 DC A 11 O2 74.9 8.9 REMARK 620 4 HOH A 251 O 100.8 136.3 136.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 103 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 5 N3 REMARK 620 2 DT A 10 N3 85.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBR A 6 N3 REMARK 620 2 DC A 9 N3 73.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBR A 6 O2 REMARK 620 2 DC A 9 O2 89.5 REMARK 620 3 DT A 10 O4' 103.4 13.9 REMARK 620 4 DT A 10 O2 85.3 6.8 18.6 REMARK 620 5 HOH A 229 O 93.1 142.2 139.8 147.6 REMARK 620 6 HOH A 245 O 127.8 63.0 54.5 69.7 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 7 N7 REMARK 620 2 DG A 7 N7 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 108 DBREF 5IX7 A 1 12 PDB 5IX7 5IX7 1 12 SEQRES 1 A 12 DG DG DA DC DT CBR DG DA DC DT DC DC HET CBR A 6 30 HET AG A 101 1 HET AG A 102 1 HET AG A 103 1 HET AG A 104 1 HET AG A 105 1 HET AG A 106 1 HET K A 107 1 HET K A 108 1 HETNAM CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM AG SILVER ION HETNAM K POTASSIUM ION FORMUL 1 CBR C9 H13 BR N3 O7 P FORMUL 2 AG 6(AG 1+) FORMUL 8 K 2(K 1+) FORMUL 10 HOH *88(H2 O) LINK O3' DT A 5 P CBR A 6 1555 1555 1.61 LINK O3' CBR A 6 P DG A 7 1555 1555 1.60 LINK N7 DG A 1 AG AG A 106 1555 1555 2.26 LINK N7 DG A 1 AG AG A 106 1555 12565 2.26 LINK N1 DG A 2 AG AG A 105 1555 1555 2.25 LINK N3 DC A 4 AG AG A 104 1555 1555 2.36 LINK O2 DC A 4 K K A 108 1555 1555 2.96 LINK N3 DT A 5 AG AG A 103 1555 1555 2.21 LINK O2 DT A 5 K K A 108 1555 1555 2.78 LINK N3 CBR A 6 AG AG A 102 1555 1555 2.18 LINK O2 CBR A 6 K K A 107 1555 1555 2.61 LINK N7 DG A 7 AG AG A 101 1555 1555 2.32 LINK N7 DG A 7 AG AG A 101 1555 12555 2.32 LINK N3 DC A 9 AG AG A 102 1555 12555 2.27 LINK O2 DC A 9 K K A 107 1555 12555 2.73 LINK N3 DT A 10 AG AG A 103 1555 12555 2.20 LINK O4' DT A 10 K K A 107 1555 12555 2.87 LINK O2 DT A 10 K K A 107 1555 12555 2.87 LINK N3 DC A 11 AG AG A 104 1555 12555 2.35 LINK O2 DC A 11 K K A 108 1555 12555 2.72 LINK N3 DC A 12 AG AG A 105 1555 12555 2.33 LINK K K A 107 O HOH A 229 1555 8565 2.79 LINK K K A 107 O HOH A 245 1555 1555 2.68 LINK K K A 108 O HOH A 251 1555 1555 2.61 SITE 1 AC1 3 DG A 7 DC A 9 AG A 102 SITE 1 AC2 6 DT A 5 CBR A 6 DG A 7 DC A 9 SITE 2 AC2 6 AG A 101 AG A 103 SITE 1 AC3 6 DC A 4 DT A 5 DC A 9 DT A 10 SITE 2 AC3 6 AG A 102 AG A 104 SITE 1 AC4 6 DG A 2 DC A 4 DT A 10 DC A 11 SITE 2 AC4 6 AG A 103 AG A 105 SITE 1 AC5 6 DG A 1 DG A 2 DC A 11 DC A 12 SITE 2 AC5 6 AG A 104 AG A 106 SITE 1 AC6 4 DG A 1 DG A 2 AG A 105 HOH A 239 SITE 1 AC7 6 CBR A 6 DG A 7 DC A 9 DT A 10 SITE 2 AC7 6 HOH A 229 HOH A 245 SITE 1 AC8 5 DC A 4 DT A 5 DA A 8 DC A 11 SITE 2 AC8 5 HOH A 251 CRYST1 30.150 30.150 118.420 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033167 0.019149 0.000000 0.00000 SCALE2 0.000000 0.038299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008445 0.00000