HEADER SIGNALING PROTEIN 23-MAR-16 5IXF TITLE SOLUTION STRUCTURE OF THE STAM2 SH3 WITH AMSH DERIVED PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL TRANSDUCING ADAPTER MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 196-263; COMPND 5 SYNONYM: STAM-2,HRS-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STAM-BINDING PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SBM MOTIF, UNP RESIDUES 228-241; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STAM2, HBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM60; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS STAM2, SH3, ENDOSOME, TRAFFIC, AMSH, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.HOLOGNE,F.X.CANTRELLE,X.TRIVELLI,O.WALKER REVDAT 3 14-JUN-23 5IXF 1 REMARK REVDAT 2 06-SEP-17 5IXF 1 REMARK REVDAT 1 07-DEC-16 5IXF 0 JRNL AUTH M.HOLOGNE,F.X.CANTRELLE,G.RIVIERE,F.GUILLIERE,X.TRIVELLI, JRNL AUTH 2 O.WALKER JRNL TITL NMR REVEALS THE INTERPLAY AMONG THE AMSH SH3 BINDING MOTIF, JRNL TITL 2 STAM2, AND LYS63-LINKED DIUBIQUITIN. JRNL REF J.MOL.BIOL. V. 428 4544 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27725184 JRNL DOI 10.1016/J.JMB.2016.10.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO DETAILS REMARK 4 REMARK 4 5IXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219552. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 250 UM [U-13C; U-15N] UIM-SH3, REMARK 210 250 UM SBM MOTIF OF AMSH, 20 MM REMARK 210 SODIUM PHOSPHATE, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D CBCA(CO)NH; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : HADDOCK, NMRVIEW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 164 REMARK 465 ALA A 165 REMARK 465 MET A 166 REMARK 465 GLY A 167 REMARK 465 MET A 168 REMARK 465 ASN A 169 REMARK 465 LYS A 170 REMARK 465 ASN A 171 REMARK 465 LYS A 172 REMARK 465 GLU A 173 REMARK 465 ASP A 174 REMARK 465 GLU A 175 REMARK 465 ASP A 176 REMARK 465 ILE A 177 REMARK 465 ALA A 178 REMARK 465 LYS A 179 REMARK 465 ALA A 180 REMARK 465 ILE A 181 REMARK 465 GLU A 182 REMARK 465 LEU A 183 REMARK 465 SER A 184 REMARK 465 LEU A 185 REMARK 465 GLN A 186 REMARK 465 GLU A 187 REMARK 465 GLN A 188 REMARK 465 LYS A 189 REMARK 465 GLN A 190 REMARK 465 GLN A 191 REMARK 465 HIS A 192 REMARK 465 THR A 193 REMARK 465 GLU A 194 REMARK 465 THR A 195 REMARK 465 LYS A 196 REMARK 465 SER A 197 REMARK 465 LEU A 198 REMARK 465 TYR A 199 REMARK 465 PRO A 200 REMARK 465 SER A 201 REMARK 465 SER A 202 REMARK 465 THR A 271 REMARK 465 GLU A 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 206 -158.90 -84.62 REMARK 500 1 ASN A 208 106.63 -59.20 REMARK 500 1 GLU A 221 -120.21 -90.08 REMARK 500 1 ALA A 222 116.02 -165.82 REMARK 500 1 VAL A 223 -52.24 -121.10 REMARK 500 1 GLU A 224 -152.99 -110.05 REMARK 500 1 ASN A 226 22.41 -152.06 REMARK 500 1 ASP A 241 14.52 -148.67 REMARK 500 1 ASN A 251 -162.46 -129.97 REMARK 500 1 LEU A 267 -82.26 -101.51 REMARK 500 1 PRO B 4 137.79 -37.78 REMARK 500 1 ASP B 7 76.91 -175.09 REMARK 500 1 SER B 9 -93.43 -144.43 REMARK 500 2 GLN A 205 -153.59 -107.33 REMARK 500 2 LEU A 206 -157.47 -91.42 REMARK 500 2 ASN A 208 95.05 -66.32 REMARK 500 2 GLU A 221 -91.56 -92.09 REMARK 500 2 ALA A 222 131.13 175.69 REMARK 500 2 GLU A 224 -165.91 -111.79 REMARK 500 2 ASN A 245 -74.40 -102.41 REMARK 500 2 PRO B 3 160.25 -43.75 REMARK 500 2 PRO B 4 135.86 -35.15 REMARK 500 2 VAL B 5 126.58 177.07 REMARK 500 2 VAL B 6 157.85 162.99 REMARK 500 2 ASP B 7 -165.07 -115.90 REMARK 500 3 GLN A 205 -150.96 -102.97 REMARK 500 3 LEU A 206 -159.54 -91.08 REMARK 500 3 ASN A 208 99.25 -67.46 REMARK 500 3 SER A 242 -70.79 -57.67 REMARK 500 3 PRO B 4 140.46 -39.42 REMARK 500 3 VAL B 5 133.23 -177.53 REMARK 500 3 VAL B 6 165.33 168.77 REMARK 500 3 ASP B 7 -155.43 -113.29 REMARK 500 4 GLN A 205 -160.53 -108.97 REMARK 500 4 LEU A 206 -157.77 -79.22 REMARK 500 4 GLU A 221 -161.14 -115.88 REMARK 500 4 VAL A 223 -57.82 -136.33 REMARK 500 4 ASP A 225 -52.25 178.70 REMARK 500 4 ASN A 226 58.49 -97.97 REMARK 500 4 SER A 242 -77.47 -67.56 REMARK 500 4 PRO B 3 161.24 -46.32 REMARK 500 4 PRO B 4 136.48 -36.20 REMARK 500 4 VAL B 5 128.02 -178.69 REMARK 500 4 VAL B 6 165.96 166.02 REMARK 500 4 ASP B 7 -167.96 -128.95 REMARK 500 4 LEU B 10 -130.71 -104.65 REMARK 500 4 LYS B 11 147.23 -179.22 REMARK 500 5 GLN A 205 -164.70 -109.92 REMARK 500 5 ASN A 208 92.61 -69.36 REMARK 500 5 GLU A 224 -150.78 -99.13 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30041 RELATED DB: BMRB DBREF 5IXF A 169 272 UNP O75886 STAM2_HUMAN 162 265 DBREF 5IXF B 1 14 UNP C9JK83 C9JK83_HUMAN 228 241 SEQADV 5IXF GLY A 164 UNP O75886 EXPRESSION TAG SEQADV 5IXF ALA A 165 UNP O75886 EXPRESSION TAG SEQADV 5IXF MET A 166 UNP O75886 EXPRESSION TAG SEQADV 5IXF GLY A 167 UNP O75886 EXPRESSION TAG SEQADV 5IXF MET A 168 UNP O75886 EXPRESSION TAG SEQADV 5IXF ASP A 261 UNP O75886 ASN 254 CONFLICT SEQRES 1 A 109 GLY ALA MET GLY MET ASN LYS ASN LYS GLU ASP GLU ASP SEQRES 2 A 109 ILE ALA LYS ALA ILE GLU LEU SER LEU GLN GLU GLN LYS SEQRES 3 A 109 GLN GLN HIS THR GLU THR LYS SER LEU TYR PRO SER SER SEQRES 4 A 109 GLU ILE GLN LEU ASN ASN LYS VAL ALA ARG LYS VAL ARG SEQRES 5 A 109 ALA LEU TYR ASP PHE GLU ALA VAL GLU ASP ASN GLU LEU SEQRES 6 A 109 THR PHE LYS HIS GLY GLU ILE ILE ILE VAL LEU ASP ASP SEQRES 7 A 109 SER ASP ALA ASN TRP TRP LYS GLY GLU ASN HIS ARG GLY SEQRES 8 A 109 ILE GLY LEU PHE PRO SER ASP PHE VAL THR THR ASN LEU SEQRES 9 A 109 ASN ILE GLU THR GLU SEQRES 1 B 14 ALA LYS PRO PRO VAL VAL ASP ARG SER LEU LYS PRO GLY SEQRES 2 B 14 ALA HELIX 1 AA1 PRO A 259 ASP A 261 5 3 SHEET 1 AA1 5 ILE A 255 PHE A 258 0 SHEET 2 AA1 5 TRP A 247 GLU A 250 -1 N GLY A 249 O GLY A 256 SHEET 3 AA1 5 ILE A 235 VAL A 238 -1 N ILE A 237 O GLU A 250 SHEET 4 AA1 5 LYS A 213 ALA A 216 -1 N VAL A 214 O ILE A 236 SHEET 5 AA1 5 VAL A 263 THR A 264 -1 O THR A 264 N ARG A 215 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1