HEADER VIRAL PROTEIN 24-MAR-16 5IYN TITLE PROTRUDING DOMAIN OF GII.4 HUMAN NOROVIRUS CHDC2094 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P DOMAIN (UNP RESIDUES 225-530); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GII.4/CHDC2094/1974/US; SOURCE 3 ORGANISM_TAXID: 660656; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: MBP-HTSHP KEYWDS NOROVIRUS, VIRUS CAPSID, PROTRUDING DOMAIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.SINGH,G.S.HANSMAN REVDAT 1 05-APR-17 5IYN 0 JRNL AUTH B.K.SINGH,G.S.HANSMAN JRNL TITL FOUR DECADES OF STRUCTURAL EVOLUTION OF GII.4 NOROVIRUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 89726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1604 - 4.8457 0.95 2942 155 0.1445 0.1488 REMARK 3 2 4.8457 - 3.8467 0.96 2850 150 0.1222 0.1186 REMARK 3 3 3.8467 - 3.3606 0.96 2838 149 0.1345 0.1531 REMARK 3 4 3.3606 - 3.0534 0.98 2871 151 0.1448 0.1803 REMARK 3 5 3.0534 - 2.8346 0.98 2844 150 0.1566 0.1846 REMARK 3 6 2.8346 - 2.6674 0.98 2855 150 0.1536 0.1816 REMARK 3 7 2.6674 - 2.5339 0.98 2853 150 0.1445 0.1875 REMARK 3 8 2.5339 - 2.4236 0.98 2840 149 0.1379 0.1663 REMARK 3 9 2.4236 - 2.3303 0.98 2867 151 0.1380 0.1407 REMARK 3 10 2.3303 - 2.2499 0.96 2777 146 0.1335 0.1650 REMARK 3 11 2.2499 - 2.1795 0.98 2840 149 0.1312 0.1572 REMARK 3 12 2.1795 - 2.1172 0.99 2831 149 0.1332 0.1758 REMARK 3 13 2.1172 - 2.0615 0.98 2828 149 0.1377 0.1630 REMARK 3 14 2.0615 - 2.0112 0.98 2849 150 0.1367 0.1479 REMARK 3 15 2.0112 - 1.9655 0.99 2852 150 0.1369 0.1708 REMARK 3 16 1.9655 - 1.9236 0.99 2875 152 0.1421 0.1548 REMARK 3 17 1.9236 - 1.8851 0.99 2850 150 0.1451 0.1814 REMARK 3 18 1.8851 - 1.8496 0.99 2848 149 0.1488 0.1767 REMARK 3 19 1.8496 - 1.8165 0.99 2859 151 0.1527 0.1851 REMARK 3 20 1.8165 - 1.7857 0.99 2821 148 0.1592 0.1923 REMARK 3 21 1.7857 - 1.7569 0.99 2859 151 0.1598 0.2017 REMARK 3 22 1.7569 - 1.7299 0.99 2807 148 0.1634 0.2018 REMARK 3 23 1.7299 - 1.7045 0.99 2864 150 0.1820 0.1992 REMARK 3 24 1.7045 - 1.6805 0.99 2851 150 0.1871 0.2267 REMARK 3 25 1.6805 - 1.6577 0.99 2810 148 0.2109 0.2442 REMARK 3 26 1.6577 - 1.6362 0.99 2855 151 0.2297 0.2832 REMARK 3 27 1.6362 - 1.6158 0.97 2777 146 0.2733 0.3124 REMARK 3 28 1.6158 - 1.5963 0.98 2793 147 0.3079 0.3898 REMARK 3 29 1.5963 - 1.5777 0.98 2837 149 0.3377 0.3852 REMARK 3 30 1.5777 - 1.5600 0.99 2798 147 0.3749 0.4203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4905 REMARK 3 ANGLE : 1.286 6722 REMARK 3 CHIRALITY : 0.053 753 REMARK 3 PLANARITY : 0.007 887 REMARK 3 DIHEDRAL : 12.547 1747 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6, PHASER REMARK 200 STARTING MODEL: 5IYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG3350, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.96000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.93000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.96000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.93000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.59500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.96000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.93000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.59500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.96000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 ASP A 393 REMARK 465 HIS A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 522 CG CD OE1 NE2 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLU B 316 CG CD OE1 OE2 REMARK 470 ASP B 391 CG OD1 OD2 REMARK 470 ASP B 393 CG OD1 OD2 REMARK 470 HIS B 394 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 480 CG OD1 OD2 REMARK 470 ARG B 483 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 522 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 250 O HOH A 701 1.57 REMARK 500 O HOH A 701 O HOH A 747 2.05 REMARK 500 OH TYR A 250 O HOH A 701 2.13 REMARK 500 OD1 ASP A 289 O HOH A 702 2.14 REMARK 500 O HOH B 720 O HOH B 904 2.17 REMARK 500 O HOH A 703 O HOH A 953 2.17 REMARK 500 O TYR B 311 O HOH B 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 254 26.48 -145.23 REMARK 500 GLN A 260 51.46 -143.50 REMARK 500 ALA A 319 170.66 179.88 REMARK 500 ASN A 373 -11.14 -155.83 REMARK 500 ASN A 373 -6.11 -158.30 REMARK 500 SER A 441 144.10 -177.76 REMARK 500 GLN B 260 51.47 -141.64 REMARK 500 ASN B 373 -8.17 -151.92 REMARK 500 ASN B 373 14.71 -163.60 REMARK 500 SER B 441 144.14 -178.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1010 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1011 DISTANCE = 6.60 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 604 DBREF 5IYN A 225 529 UNP D0QJ68 D0QJ68_9CALI 225 529 DBREF 5IYN B 225 529 UNP D0QJ68 D0QJ68_9CALI 225 529 SEQADV 5IYN SER A 224 UNP D0QJ68 EXPRESSION TAG SEQADV 5IYN SER B 224 UNP D0QJ68 EXPRESSION TAG SEQRES 1 A 306 SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU GLU SEQRES 2 A 306 MET SER ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 A 306 TYR THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 A 306 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 A 306 THR GLN LEU SER ALA VAL ASN ILE CYS ASN PHE ARG GLY SEQRES 6 A 306 ASP VAL THR ARG VAL GLY ILE SER HIS ASP TYR THR MET SEQRES 7 A 306 ASN LEU VAL SER GLN ASN TRP ASN ASN TYR ASP PRO THR SEQRES 8 A 306 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 A 306 GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR ARG ALA SEQRES 10 A 306 ASP GLY SER THR ARG ALA HIS LYS ALA THR VAL SER THR SEQRES 11 A 306 GLY SER VAL HIS PHE THR PRO LYS LEU GLY SER VAL GLN SEQRES 12 A 306 PHE THR THR ASP THR ASN ASN ASP PHE GLN THR GLY GLN SEQRES 13 A 306 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 A 306 ASP HIS HIS GLN ASN GLU PRO GLN GLN TRP VAL LEU PRO SEQRES 15 A 306 ASN TYR SER GLY THR SER GLY HIS ASN VAL HIS LEU ALA SEQRES 16 A 306 PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU LEU SEQRES 17 A 306 PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR PRO SEQRES 18 A 306 ASN MET ASN LEU ASP CYS LEU LEU PRO GLN GLU TRP VAL SEQRES 19 A 306 SER HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SER ASP SEQRES 20 A 306 VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY ARG SEQRES 21 A 306 VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR ILE SEQRES 22 A 306 THR VAL ALA HIS THR GLY PRO TYR ASP LEU VAL ILE PRO SEQRES 23 A 306 PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 24 A 306 PHE TYR THR LEU ALA PRO MET SEQRES 1 B 306 SER LYS PRO PHE THR VAL PRO ILE LEU THR VAL GLU GLU SEQRES 2 B 306 MET SER ASN SER ARG PHE PRO ILE PRO LEU GLU LYS LEU SEQRES 3 B 306 TYR THR GLY PRO SER SER ALA PHE VAL VAL GLN PRO GLN SEQRES 4 B 306 ASN GLY ARG CYS THR THR ASP GLY VAL LEU LEU GLY THR SEQRES 5 B 306 THR GLN LEU SER ALA VAL ASN ILE CYS ASN PHE ARG GLY SEQRES 6 B 306 ASP VAL THR ARG VAL GLY ILE SER HIS ASP TYR THR MET SEQRES 7 B 306 ASN LEU VAL SER GLN ASN TRP ASN ASN TYR ASP PRO THR SEQRES 8 B 306 GLU GLU ILE PRO ALA PRO LEU GLY THR PRO ASP PHE VAL SEQRES 9 B 306 GLY LYS ILE GLN GLY LEU LEU THR GLN THR THR ARG ALA SEQRES 10 B 306 ASP GLY SER THR ARG ALA HIS LYS ALA THR VAL SER THR SEQRES 11 B 306 GLY SER VAL HIS PHE THR PRO LYS LEU GLY SER VAL GLN SEQRES 12 B 306 PHE THR THR ASP THR ASN ASN ASP PHE GLN THR GLY GLN SEQRES 13 B 306 ASN THR LYS PHE THR PRO VAL GLY VAL ILE GLN ASP GLY SEQRES 14 B 306 ASP HIS HIS GLN ASN GLU PRO GLN GLN TRP VAL LEU PRO SEQRES 15 B 306 ASN TYR SER GLY THR SER GLY HIS ASN VAL HIS LEU ALA SEQRES 16 B 306 PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLN LEU LEU SEQRES 17 B 306 PHE PHE ARG SER THR MET PRO GLY CYS SER GLY TYR PRO SEQRES 18 B 306 ASN MET ASN LEU ASP CYS LEU LEU PRO GLN GLU TRP VAL SEQRES 19 B 306 SER HIS PHE TYR GLN GLU ALA ALA PRO ALA GLN SER ASP SEQRES 20 B 306 VAL ALA LEU LEU ARG PHE VAL ASN PRO ASP THR GLY ARG SEQRES 21 B 306 VAL LEU PHE GLU CYS LYS LEU HIS LYS SER GLY TYR ILE SEQRES 22 B 306 THR VAL ALA HIS THR GLY PRO TYR ASP LEU VAL ILE PRO SEQRES 23 B 306 PRO ASN GLY TYR PHE ARG PHE ASP SER TRP VAL ASN GLN SEQRES 24 B 306 PHE TYR THR LEU ALA PRO MET HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *621(H2 O) HELIX 1 1 VAL A 234 GLU A 236 5 3 HELIX 2 2 ALA A 280 ASN A 282 5 3 HELIX 3 3 PRO A 360 LEU A 362 5 3 HELIX 4 4 GLY A 409 SER A 411 5 3 HELIX 5 5 GLN A 454 GLU A 463 1 10 HELIX 6 6 VAL B 234 GLU B 236 5 3 HELIX 7 7 ALA B 280 ASN B 282 5 3 HELIX 8 8 GLN B 454 GLU B 463 1 10 SHEET 1 A 3 LYS A 248 THR A 251 0 SHEET 2 A 3 LEU A 431 THR A 436 -1 SHEET 3 A 3 ASN A 447 CYS A 450 -1 SHEET 1 B 6 SER A 364 THR A 368 0 SHEET 2 B 6 ASP A 298 LEU A 303 -1 SHEET 3 B 6 PHE A 286 ARG A 292 -1 SHEET 4 B 6 THR A 381 ILE A 389 -1 SHEET 5 B 6 LYS A 329 THR A 337 -1 SHEET 6 B 6 THR A 344 SER A 352 -1 SHEET 1 C 5 GLU A 428 LEU A 430 0 SHEET 2 C 5 TYR A 495 ALA A 499 -1 SHEET 3 C 5 VAL A 484 HIS A 491 -1 SHEET 4 C 5 VAL A 471 VAL A 477 -1 SHEET 5 C 5 TYR A 513 VAL A 520 -1 SHEET 1 D 3 LYS B 248 THR B 251 0 SHEET 2 D 3 LEU B 431 THR B 436 -1 SHEET 3 D 3 ASN B 447 CYS B 450 -1 SHEET 1 E 6 SER B 364 THR B 368 0 SHEET 2 E 6 ASP B 298 LEU B 303 -1 SHEET 3 E 6 PHE B 286 ARG B 292 -1 SHEET 4 E 6 THR B 381 VAL B 388 -1 SHEET 5 E 6 LYS B 329 THR B 337 -1 SHEET 6 E 6 THR B 344 SER B 352 -1 SHEET 1 F 5 GLU B 428 LEU B 430 0 SHEET 2 F 5 TYR B 495 ALA B 499 -1 SHEET 3 F 5 VAL B 484 HIS B 491 -1 SHEET 4 F 5 VAL B 471 VAL B 477 -1 SHEET 5 F 5 TYR B 513 VAL B 520 -1 SHEET 1 G 2 GLY B 387 ILE B 389 0 SHEET 2 G 2 PRO B 438 SER B 441 1 CISPEP 1 GLU A 398 PRO A 399 0 -8.50 CISPEP 2 GLU B 398 PRO B 399 0 -9.08 SITE 1 AC1 8 LEU A 272 LEU A 273 GLY A 274 THR A 276 SITE 2 AC1 8 ILE A 317 LEU A 321 HOH A 710 HOH A 734 SITE 1 AC2 9 THR A 233 VAL A 234 GLU A 235 PHE A 476 SITE 2 AC2 9 ILE A 508 PRO A 509 PRO A 510 GLY A 512 SITE 3 AC2 9 HOH A 715 SITE 1 AC3 5 TYR A 504 MET A 529 EDO A 605 ASN B 309 SITE 2 AC3 5 ASN B 310 SITE 1 AC4 7 GLN A 401 TRP A 402 PHE A 432 ASP A 449 SITE 2 AC4 7 HOH A 747 HOH A 846 HOH A 927 SITE 1 AC5 6 TYR A 504 LEU A 506 VAL A 507 MET A 529 SITE 2 AC5 6 EDO A 603 HOH A 723 SITE 1 AC6 7 LEU B 272 LEU B 273 GLY B 274 THR B 276 SITE 2 AC6 7 LEU B 321 HOH B 708 HOH B 712 SITE 1 AC7 6 GLY B 252 PRO B 253 GLN B 401 TRP B 402 SITE 2 AC7 6 PHE B 432 ASP B 449 SITE 1 AC8 7 THR B 233 VAL B 234 GLU B 235 PRO B 509 SITE 2 AC8 7 PRO B 510 GLY B 512 HOH B 956 SITE 1 AC9 5 GLY A 442 SER B 343 THR B 344 ARG B 345 SITE 2 AC9 5 HOH B 882 CRYST1 89.190 105.920 135.860 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007361 0.00000