HEADER HYDROLASE 24-MAR-16 5IZ3 TITLE P. PATENS SEDOHEPTULOSE-1,7-BISPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEDOHEPTULOSE-1,7-BISPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PREDICTED PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSCOMITRELLA PATENS; SOURCE 3 ORGANISM_COMMON: MOSS; SOURCE 4 ORGANISM_TAXID: 3218; SOURCE 5 GENE: PHYPADRAFT_122707; SOURCE 6 EXPRESSION_SYSTEM: PHYSCOMITRELLA PATENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 3218; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PHYSCOMITRELLA PATENS SUBSP. PATENS; SOURCE 10 ORGANISM_COMMON: MOSS; SOURCE 11 ORGANISM_TAXID: 3218; SOURCE 12 GENE: PHYPADRAFT_122707; SOURCE 13 EXPRESSION_SYSTEM: PHYSCOMITRELLA PATENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 3218 KEYWDS PHYSCOMITRELLA PATENS CARBON METABOLISM SEDOHEPTULOSE BISPHOPHATASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,D.GUETLE REVDAT 4 10-JAN-24 5IZ3 1 REMARK REVDAT 3 16-OCT-19 5IZ3 1 REMARK REVDAT 2 22-JUN-16 5IZ3 1 JRNL REVDAT 1 08-JUN-16 5IZ3 0 JRNL AUTH D.D.GUTLE,T.RORET,S.J.MULLER,J.COUTURIER,S.D.LEMAIRE, JRNL AUTH 2 A.HECKER,T.DHALLEINE,B.B.BUCHANAN,R.RESKI,O.EINSLE, JRNL AUTH 3 J.P.JACQUOT JRNL TITL CHLOROPLAST FBPASE AND SBPASE ARE THIOREDOXIN-LINKED ENZYMES JRNL TITL 2 WITH SIMILAR ARCHITECTURE BUT DIFFERENT EVOLUTIONARY JRNL TITL 3 HISTORIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 6779 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27226308 JRNL DOI 10.1073/PNAS.1606241113 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 98.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.7 REMARK 3 NUMBER OF REFLECTIONS : 122301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 16.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.797 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5112 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4847 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6938 ; 2.317 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11178 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 659 ; 6.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;37.464 ;24.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;14.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.800 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5876 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1143 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2597 ; 1.810 ; 1.234 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2596 ; 1.807 ; 1.231 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3269 ; 2.832 ; 1.842 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3270 ; 2.833 ; 1.846 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2514 ; 3.195 ; 1.623 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2507 ; 3.183 ; 1.622 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3658 ; 4.954 ; 2.285 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 23390 ; 6.971 ;13.039 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 23391 ; 6.971 ;13.040 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1835 -64.0043 -27.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0301 REMARK 3 T33: 0.0435 T12: 0.0045 REMARK 3 T13: 0.0219 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.4623 L22: 0.5372 REMARK 3 L33: 0.0372 L12: -0.1772 REMARK 3 L13: -0.0602 L23: 0.1218 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: -0.0559 S13: -0.0823 REMARK 3 S21: 0.0117 S22: 0.0291 S23: 0.0876 REMARK 3 S31: 0.0001 S32: 0.0220 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 393 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0532 -33.0321 -27.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0145 REMARK 3 T33: 0.0336 T12: 0.0050 REMARK 3 T13: -0.0029 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.1649 L22: 0.2150 REMARK 3 L33: 0.1649 L12: -0.0431 REMARK 3 L13: 0.0190 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.0191 S13: 0.0618 REMARK 3 S21: 0.0168 S22: -0.0190 S23: 0.0083 REMARK 3 S31: 0.0116 S32: 0.0020 S33: 0.0310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1D9Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % PEG 600 0.2 M IMIDAZOLE/MALATE, REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.62250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.62250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 776 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 789 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 809 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 149 O HOH B 501 1.61 REMARK 500 O GLU A 162 O HOH A 501 1.66 REMARK 500 OD1 ASP B 243 O HOH B 502 1.81 REMARK 500 OD2 ASP A 181 O HOH A 502 1.85 REMARK 500 CG MET A 242 O HOH A 657 1.88 REMARK 500 O HOH B 577 O HOH B 606 1.94 REMARK 500 CG MET B 242 O HOH B 530 1.95 REMARK 500 O HOH A 520 O HOH A 741 1.96 REMARK 500 NH1 ARG A 149 O HOH A 503 1.98 REMARK 500 OD1 ASP B 275 O HOH B 503 2.04 REMARK 500 OE1 GLU A 161 O HOH A 504 2.10 REMARK 500 O HOH A 587 O HOH A 590 2.10 REMARK 500 OE1 GLU B 106 O HOH B 504 2.11 REMARK 500 O HOH A 551 O HOH B 517 2.14 REMARK 500 NZ LYS A 251 OE2 GLU A 307 2.16 REMARK 500 O HOH B 704 O HOH B 795 2.16 REMARK 500 O HOH B 533 O HOH B 721 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 761 O HOH B 761 3454 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 85 CD GLU A 85 OE1 0.085 REMARK 500 CYS A 154 CB CYS A 154 SG -0.107 REMARK 500 CYS A 158 CB CYS A 158 SG -0.143 REMARK 500 GLU A 307 CD GLU A 307 OE1 -0.082 REMARK 500 TYR B 288 CE1 TYR B 288 CZ -0.086 REMARK 500 ASP B 299 CG ASP B 299 OD1 -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 108 CB - CG - CD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 MET A 168 CG - SD - CE ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 202 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 VAL A 297 CA - CB - CG2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 374 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 374 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG B 109 CG - CD - NE ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 LEU B 165 CB - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP B 167 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET B 168 CG - SD - CE ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP B 187 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 202 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 223 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE B 239 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET B 242 CG - SD - CE ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP B 243 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP B 243 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 152 -1.82 67.65 REMARK 500 LEU A 180 78.59 -153.46 REMARK 500 GLU A 328 -53.35 -122.91 REMARK 500 LEU B 180 86.03 -154.85 REMARK 500 LEU B 180 77.84 -154.85 REMARK 500 GLU B 328 -55.67 -128.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 770 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 DBREF 5IZ3 A 79 394 UNP A9S1S8 A9S1S8_PHYPA 24 339 DBREF 5IZ3 B 79 394 UNP A9S1S8 A9S1S8_PHYPA 24 339 SEQADV 5IZ3 THR B 126 UNP A9S1S8 VAL 71 CONFLICT SEQADV 5IZ3 THR B 392 UNP A9S1S8 ALA 337 CONFLICT SEQADV 5IZ3 VAL B 393 UNP A9S1S8 THR 338 CONFLICT SEQRES 1 A 316 GLU LEU GLY ASP SER LEU GLU GLU PHE LEU ALA LYS ALA SEQRES 2 A 316 THR THR ASP LYS ASN LEU ALA ARG LEU LEU VAL CYS MET SEQRES 3 A 316 GLY GLU ALA LEU ARG THR ILE ALA PHE LYS VAL ARG THR SEQRES 4 A 316 ALA SER CYS GLY ALA THR ALA CYS VAL ASN THR PHE GLY SEQRES 5 A 316 ASP GLU GLN LEU ALA VAL ASP MET LEU ALA ASP LYS LEU SEQRES 6 A 316 LEU PHE GLU ALA LEU ARG HIS SER HIS VAL CYS LYS TYR SEQRES 7 A 316 ALA CYS SER GLU GLU GLU PRO ILE LEU GLN ASP MET GLU SEQRES 8 A 316 GLY GLU GLY PHE SER VAL ALA PHE ASP PRO LEU ASP GLY SEQRES 9 A 316 SER SER ILE VAL ASP THR ASN PHE THR VAL GLY THR ILE SEQRES 10 A 316 PHE GLY VAL TRP PRO GLY ASP LYS LEU THR GLY ILE THR SEQRES 11 A 316 GLY ARG ASP GLN ALA ALA SER ALA MET GLY ILE TYR GLY SEQRES 12 A 316 PRO ARG THR THR TYR VAL VAL ALA ILE ASN GLY PHE PRO SEQRES 13 A 316 GLY THR HIS GLU PHE LEU LEU MET ASP ASP GLY LYS TRP SEQRES 14 A 316 GLN HIS VAL LYS GLU THR THR GLU ILE LYS GLU GLY LYS SEQRES 15 A 316 LEU PHE SER PRO GLY ASN LEU ARG ALA THR PHE ASP ASN SEQRES 16 A 316 ALA ASP TYR GLU LYS LEU ILE ASN TYR TYR VAL SER GLU SEQRES 17 A 316 LYS TYR THR LEU ARG TYR THR GLY GLY MET VAL PRO ASP SEQRES 18 A 316 VAL ASN GLN ILE ILE VAL LYS GLU ARG GLY ILE PHE THR SEQRES 19 A 316 ASN VAL THR SER PRO THR THR LYS ALA LYS LEU ARG LEU SEQRES 20 A 316 LEU PHE GLU VAL ALA PRO LEU GLY LEU LEU ILE GLU ASN SEQRES 21 A 316 ALA GLY GLY TYR SER SER ASP GLY LYS GLN SER VAL LEU SEQRES 22 A 316 ASP LYS VAL VAL VAL ASN THR ASP ASP ARG THR GLN VAL SEQRES 23 A 316 ALA TYR GLY SER ARG ASP GLU ILE ILE ARG PHE GLU GLU SEQRES 24 A 316 THR LEU TYR GLY ASP SER ARG LEU LYS ALA GLU LEU ALA SEQRES 25 A 316 ALA ALA THR VAL SEQRES 1 B 316 GLU LEU GLY ASP SER LEU GLU GLU PHE LEU ALA LYS ALA SEQRES 2 B 316 THR THR ASP LYS ASN LEU ALA ARG LEU LEU VAL CYS MET SEQRES 3 B 316 GLY GLU ALA LEU ARG THR ILE ALA PHE LYS VAL ARG THR SEQRES 4 B 316 ALA SER CYS GLY ALA THR ALA CYS THR ASN THR PHE GLY SEQRES 5 B 316 ASP GLU GLN LEU ALA VAL ASP MET LEU ALA ASP LYS LEU SEQRES 6 B 316 LEU PHE GLU ALA LEU ARG HIS SER HIS VAL CYS LYS TYR SEQRES 7 B 316 ALA CYS SER GLU GLU GLU PRO ILE LEU GLN ASP MET GLU SEQRES 8 B 316 GLY GLU GLY PHE SER VAL ALA PHE ASP PRO LEU ASP GLY SEQRES 9 B 316 SER SER ILE VAL ASP THR ASN PHE THR VAL GLY THR ILE SEQRES 10 B 316 PHE GLY VAL TRP PRO GLY ASP LYS LEU THR GLY ILE THR SEQRES 11 B 316 GLY ARG ASP GLN ALA ALA SER ALA MET GLY ILE TYR GLY SEQRES 12 B 316 PRO ARG THR THR TYR VAL VAL ALA ILE ASN GLY PHE PRO SEQRES 13 B 316 GLY THR HIS GLU PHE LEU LEU MET ASP ASP GLY LYS TRP SEQRES 14 B 316 GLN HIS VAL LYS GLU THR THR GLU ILE LYS GLU GLY LYS SEQRES 15 B 316 LEU PHE SER PRO GLY ASN LEU ARG ALA THR PHE ASP ASN SEQRES 16 B 316 ALA ASP TYR GLU LYS LEU ILE ASN TYR TYR VAL SER GLU SEQRES 17 B 316 LYS TYR THR LEU ARG TYR THR GLY GLY MET VAL PRO ASP SEQRES 18 B 316 VAL ASN GLN ILE ILE VAL LYS GLU ARG GLY ILE PHE THR SEQRES 19 B 316 ASN VAL THR SER PRO THR THR LYS ALA LYS LEU ARG LEU SEQRES 20 B 316 LEU PHE GLU VAL ALA PRO LEU GLY LEU LEU ILE GLU ASN SEQRES 21 B 316 ALA GLY GLY TYR SER SER ASP GLY LYS GLN SER VAL LEU SEQRES 22 B 316 ASP LYS VAL VAL VAL ASN THR ASP ASP ARG THR GLN VAL SEQRES 23 B 316 ALA TYR GLY SER ARG ASP GLU ILE ILE ARG PHE GLU GLU SEQRES 24 B 316 THR LEU TYR GLY ASP SER ARG LEU LYS ALA GLU LEU ALA SEQRES 25 B 316 ALA THR VAL VAL HET IMD A 401 5 HET PO4 A 402 5 HET IMD B 401 5 HET PO4 B 402 5 HETNAM IMD IMIDAZOLE HETNAM PO4 PHOSPHATE ION FORMUL 3 IMD 2(C3 H5 N2 1+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *610(H2 O) HELIX 1 AA1 SER A 83 THR A 92 1 10 HELIX 2 AA2 ASP A 94 THR A 117 1 24 HELIX 3 AA3 VAL A 136 HIS A 152 1 17 HELIX 4 AA4 GLY A 182 ASN A 189 5 8 HELIX 5 AA5 THR A 208 GLN A 212 5 5 HELIX 6 AA6 ASN A 266 ASP A 272 5 7 HELIX 7 AA7 ASN A 273 GLU A 286 1 14 HELIX 8 AA8 GLY A 295 GLU A 307 1 13 HELIX 9 AA9 GLU A 328 ALA A 339 1 12 HELIX 10 AB1 SER A 349 LYS A 353 5 5 HELIX 11 AB2 SER A 368 GLY A 381 1 14 HELIX 12 AB3 SER A 383 ALA A 390 1 8 HELIX 13 AB4 SER B 83 THR B 92 1 10 HELIX 14 AB5 ASP B 94 THR B 117 1 24 HELIX 15 AB6 VAL B 136 HIS B 152 1 17 HELIX 16 AB7 GLY B 182 ASN B 189 5 8 HELIX 17 AB8 ARG B 210 GLN B 212 5 3 HELIX 18 AB9 ASN B 266 ASP B 272 5 7 HELIX 19 AC1 ASN B 273 GLU B 286 1 14 HELIX 20 AC2 GLY B 295 GLU B 307 1 13 HELIX 21 AC3 GLU B 328 ALA B 339 1 12 HELIX 22 AC4 SER B 349 ASP B 352 5 4 HELIX 23 AC5 SER B 368 GLY B 381 1 14 HELIX 24 AC6 SER B 383 VAL B 393 1 11 SHEET 1 AA1 3 SER A 119 CYS A 120 0 SHEET 2 AA1 3 CYS A 125 PHE A 129 -1 O VAL A 126 N SER A 119 SHEET 3 AA1 3 GLU A 132 ALA A 135 -1 O LEU A 134 N ASN A 127 SHEET 1 AA2 8 GLU A 162 ASP A 167 0 SHEET 2 AA2 8 CYS A 154 SER A 159 -1 N ALA A 157 O GLN A 166 SHEET 3 AA2 8 PHE A 173 ASP A 181 1 O PHE A 173 N LYS A 155 SHEET 4 AA2 8 VAL A 192 PRO A 200 -1 O TRP A 199 N SER A 174 SHEET 5 AA2 8 ALA A 214 TYR A 220 -1 O TYR A 220 N VAL A 192 SHEET 6 AA2 8 THR A 224 ILE A 230 -1 O VAL A 227 N MET A 217 SHEET 7 AA2 8 THR A 236 LEU A 241 -1 O HIS A 237 N VAL A 228 SHEET 8 AA2 8 TRP A 247 THR A 253 -1 O VAL A 250 N GLU A 238 SHEET 1 AA3 5 THR A 289 LEU A 290 0 SHEET 2 AA3 5 LYS A 257 GLY A 265 1 N LYS A 260 O THR A 289 SHEET 3 AA3 5 ARG A 308 ASN A 313 1 O THR A 312 N GLY A 265 SHEET 4 AA3 5 VAL A 364 GLY A 367 -1 O TYR A 366 N PHE A 311 SHEET 5 AA3 5 TYR A 342 SER A 344 -1 N TYR A 342 O GLY A 367 SHEET 1 AA4 3 SER B 119 CYS B 120 0 SHEET 2 AA4 3 CYS B 125 PHE B 129 -1 O THR B 126 N SER B 119 SHEET 3 AA4 3 GLU B 132 ALA B 135 -1 O LEU B 134 N ASN B 127 SHEET 1 AA5 8 GLU B 162 ASP B 167 0 SHEET 2 AA5 8 CYS B 154 SER B 159 -1 N ALA B 157 O GLN B 166 SHEET 3 AA5 8 PHE B 173 ASP B 181 1 O PHE B 173 N LYS B 155 SHEET 4 AA5 8 VAL B 192 PRO B 200 -1 O TRP B 199 N SER B 174 SHEET 5 AA5 8 ALA B 214 TYR B 220 -1 O TYR B 220 N VAL B 192 SHEET 6 AA5 8 THR B 224 ILE B 230 -1 O THR B 225 N ILE B 219 SHEET 7 AA5 8 THR B 236 LEU B 241 -1 O HIS B 237 N VAL B 228 SHEET 8 AA5 8 TRP B 247 THR B 253 -1 O VAL B 250 N GLU B 238 SHEET 1 AA6 2 ILE B 207 THR B 208 0 SHEET 2 AA6 2 VAL B 354 VAL B 355 -1 O VAL B 355 N ILE B 207 SHEET 1 AA7 5 THR B 289 LEU B 290 0 SHEET 2 AA7 5 LYS B 257 GLY B 265 1 N LYS B 260 O THR B 289 SHEET 3 AA7 5 ARG B 308 ASN B 313 1 O THR B 312 N GLY B 265 SHEET 4 AA7 5 VAL B 364 GLY B 367 -1 O TYR B 366 N PHE B 311 SHEET 5 AA7 5 TYR B 342 SER B 344 -1 N TYR B 342 O GLY B 367 SSBOND 1 CYS A 120 CYS A 125 1555 1555 2.20 SSBOND 2 CYS B 120 CYS B 125 1555 1555 2.15 SITE 1 AC1 7 SER A 343 LYS A 347 SER A 349 GLU A 376 SITE 2 AC1 7 LEU A 385 GLU A 388 HOH A 574 SITE 1 AC2 9 ASN A 266 ARG A 268 TYR A 292 HOH A 514 SITE 2 AC2 9 HOH A 600 HOH A 603 HOH A 614 LEU B 290 SITE 3 AC2 9 ARG B 291 SITE 1 AC3 7 SER B 343 GLN B 348 SER B 349 GLU B 376 SITE 2 AC3 7 LEU B 385 GLU B 388 HOH B 624 SITE 1 AC4 9 LEU A 290 ARG A 291 ASN B 266 ARG B 268 SITE 2 AC4 9 TYR B 292 HOH B 505 HOH B 509 HOH B 566 SITE 3 AC4 9 HOH B 618 CRYST1 45.180 70.417 197.245 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005070 0.00000