HEADER OXIDOREDUCTASE 24-MAR-16 5IZ4 TITLE CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN DEHYDROGENASE/REDUCTASE TITLE 2 FROM BURKHOLDERIA XENOVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BUXEA.00010.E.B1; COMPND 5 EC: 1.1.1.100; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS (STRAIN LB400); SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: BXE_C0900; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, BURKHOLDERIA XENOVORANS, SHORT-CHAIN DEHYDROGENASE/REDUCTASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 27-SEP-23 5IZ4 1 REMARK REVDAT 2 22-NOV-17 5IZ4 1 REMARK REVDAT 1 04-MAY-16 5IZ4 0 JRNL AUTH J.ABENDROTH,S.J.MAYCLIN,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN JRNL TITL 2 DEHYDROGENASE/REDUCTASE FROM BURKHOLDERIA XENOVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2356 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8727 - 4.2156 0.99 1806 131 0.1572 0.1489 REMARK 3 2 4.2156 - 3.3469 1.00 1701 133 0.1315 0.1537 REMARK 3 3 3.3469 - 2.9240 1.00 1680 133 0.1448 0.1676 REMARK 3 4 2.9240 - 2.6568 1.00 1672 134 0.1515 0.2005 REMARK 3 5 2.6568 - 2.4664 1.00 1667 139 0.1547 0.1968 REMARK 3 6 2.4664 - 2.3210 1.00 1647 137 0.1516 0.1974 REMARK 3 7 2.3210 - 2.2048 1.00 1605 151 0.1483 0.1721 REMARK 3 8 2.2048 - 2.1088 1.00 1661 134 0.1531 0.1914 REMARK 3 9 2.1088 - 2.0276 1.00 1634 135 0.1585 0.2149 REMARK 3 10 2.0276 - 1.9577 1.00 1625 135 0.1674 0.2268 REMARK 3 11 1.9577 - 1.8965 1.00 1628 139 0.1738 0.2381 REMARK 3 12 1.8965 - 1.8423 1.00 1606 150 0.1691 0.2139 REMARK 3 13 1.8423 - 1.7938 1.00 1652 115 0.1751 0.2160 REMARK 3 14 1.7938 - 1.7500 1.00 1617 134 0.1876 0.2517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1927 REMARK 3 ANGLE : 0.797 2645 REMARK 3 CHIRALITY : 0.053 316 REMARK 3 PLANARITY : 0.005 343 REMARK 3 DIHEDRAL : 14.490 1161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9808 20.1207 13.5878 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.1524 REMARK 3 T33: 0.1958 T12: -0.0370 REMARK 3 T13: 0.0424 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.6810 L22: 3.2727 REMARK 3 L33: 2.6875 L12: 1.1609 REMARK 3 L13: 0.5672 L23: 0.6789 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: 0.1312 S13: 0.1303 REMARK 3 S21: -0.3448 S22: 0.1063 S23: -0.0610 REMARK 3 S31: -0.4132 S32: 0.1899 S33: -0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5145 7.5778 11.0594 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.1042 REMARK 3 T33: 0.1336 T12: 0.0038 REMARK 3 T13: 0.0375 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.5010 L22: 0.5648 REMARK 3 L33: 0.8309 L12: 0.2759 REMARK 3 L13: 0.1782 L23: 0.1270 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: 0.1515 S13: 0.0498 REMARK 3 S21: -0.2210 S22: 0.0411 S23: -0.0558 REMARK 3 S31: -0.0560 S32: 0.1151 S33: -0.0496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9094 4.6805 22.3599 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.1051 REMARK 3 T33: 0.1279 T12: 0.0054 REMARK 3 T13: 0.0102 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 4.0774 L22: 0.8189 REMARK 3 L33: 1.0274 L12: -0.5510 REMARK 3 L13: -0.2108 L23: -0.1693 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: -0.1444 S13: 0.0217 REMARK 3 S21: -0.0638 S22: 0.0280 S23: -0.0898 REMARK 3 S31: 0.0179 S32: 0.0861 S33: 0.0598 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7784 15.4312 28.5959 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.1182 REMARK 3 T33: 0.1262 T12: 0.0048 REMARK 3 T13: -0.0155 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3409 L22: 2.1103 REMARK 3 L33: 2.3998 L12: -0.7784 REMARK 3 L13: -0.7193 L23: 0.5312 REMARK 3 S TENSOR REMARK 3 S11: 0.0944 S12: 0.0685 S13: 0.2685 REMARK 3 S21: -0.2496 S22: -0.0525 S23: 0.0188 REMARK 3 S31: -0.2857 S32: -0.1936 S33: 0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5IZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 35.865 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4E3Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTIC MORPHEUS F12: 12.5% W/V PEG REMARK 280 1000, 12.5% W/V PEG 3350, 12.5% V/V MPD; 20MM OF EACH D-GLUCOSE, REMARK 280 D-MANNOSE, D-GALACTOSE, L-FUCOSE, D-XYLOSE, N-ACETYLD- REMARK 280 GLUCOSAMINE; 10MM BICINE/TRIZMA BASE PH 8.5; REMARK 280 BUXEA.00010.E.B1.PS37833 AT 12.8MG/ML + 3MM NAD, DIRECT CRYO; REMARK 280 TRAY: 270602F12, PUCK JRA0-6; ONLY THE ADP MOIETY OF NAD WAS REMARK 280 OBSERVED IN THE DENSITY, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 67.62500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 67.62500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.62500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 67.62500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.61000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -42.30500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 42.30500 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 67.62500 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 -42.30500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -42.30500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 67.62500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 201 REMARK 465 LEU A 202 REMARK 465 LEU A 203 REMARK 465 ARG A 204 REMARK 465 VAL A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 TYR A 211 REMARK 465 ASP A 212 REMARK 465 GLY A 262 REMARK 465 ALA A 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 VAL A 214 CG1 CG2 REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 38 -73.69 -76.39 REMARK 500 SER A 151 -139.01 -94.98 REMARK 500 THR A 159 -150.91 -97.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 625 DISTANCE = 5.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUXEA.00010.E RELATED DB: TARGETTRACK DBREF 5IZ4 A 1 263 UNP Q13GL4 Q13GL4_BURXL 1 263 SEQADV 5IZ4 MET A -7 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 ALA A -6 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A -5 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A -4 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A -3 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A -2 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A -1 UNP Q13GL4 EXPRESSION TAG SEQADV 5IZ4 HIS A 0 UNP Q13GL4 EXPRESSION TAG SEQRES 1 A 271 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN SER SER SEQRES 2 A 271 THR PRO VAL CYS VAL ILE THR GLY SER ALA SER GLY ILE SEQRES 3 A 271 GLY ALA ALA THR ALA LEU ARG PHE ALA GLN ALA GLY TRP SEQRES 4 A 271 SER VAL ALA ILE GLY ASN PHE ASP ASP SER THR ARG ASP SEQRES 5 A 271 ALA ALA SER THR VAL GLU ALA LEU CYS ARG ASP ALA GLY SEQRES 6 A 271 ALA GLN THR LEU ILE PHE ASP ALA ASP VAL GLY LYS ASP SEQRES 7 A 271 ALA ASP CYS ARG HIS ALA VAL ASP MET VAL ALA SER ARG SEQRES 8 A 271 TRP GLN ARG ILE ASP ALA LEU ILE ASN CYS ALA GLY THR SEQRES 9 A 271 THR ARG VAL ILE PRO HIS ASN ALA PHE ASP GLN ILE ASP SEQRES 10 A 271 ASP PHE GLU PHE GLU ARG VAL TYR ARG VAL ASN LEU ILE SEQRES 11 A 271 GLY LEU TYR GLN MET THR ARG ALA ALA VAL PRO LEU LEU SEQRES 12 A 271 ARG GLU SER ALA SER ALA THR ARG SER THR SER VAL VAL SEQRES 13 A 271 ASN VAL SER SER LEU ALA GLY LEU ASN GLY THR GLY SER SEQRES 14 A 271 SER ILE ALA TYR ALA ALA SER LYS GLY ALA VAL ASN THR SEQRES 15 A 271 LEU THR LEU SER LEU ALA ARG ASN LEU ALA PRO HIS ILE SEQRES 16 A 271 ARG VAL ASN ALA LEU ALA PRO GLY MET VAL ASP ASP GLY SEQRES 17 A 271 LEU LEU LEU ARG VAL LEU ASP ALA ALA ALA TYR ASP GLY SEQRES 18 A 271 VAL LEU SER ARG MET THR GLU SER ALA PRO LEU LYS ARG SEQRES 19 A 271 VAL SER ARG PRO ALA GLU ILE ALA GLU LEU ALA TRP PHE SEQRES 20 A 271 LEU THR ALA HIS ALA PRO ALA ILE THR GLY GLN VAL ILE SEQRES 21 A 271 ALA ALA GLU ASN GLY LEU LEU LEU GLY GLY ALA HET ADP A 300 27 HET MRD A 301 8 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MRD C6 H14 O2 FORMUL 4 HOH *225(H2 O) HELIX 1 AA1 SER A 16 ALA A 29 1 14 HELIX 2 AA2 ASP A 39 SER A 41 5 3 HELIX 3 AA3 THR A 42 ALA A 56 1 15 HELIX 4 AA4 LYS A 69 GLN A 85 1 17 HELIX 5 AA5 ALA A 104 ILE A 108 5 5 HELIX 6 AA6 ASP A 109 LEU A 121 1 13 HELIX 7 AA7 LEU A 121 ALA A 139 1 19 HELIX 8 AA8 SER A 152 GLY A 158 1 7 HELIX 9 AA9 SER A 162 ALA A 184 1 23 HELIX 10 AB1 VAL A 214 ALA A 222 1 9 HELIX 11 AB2 ARG A 229 HIS A 243 1 15 HELIX 12 AB3 GLY A 257 GLY A 261 5 5 SHEET 1 AA1 7 THR A 60 ASP A 64 0 SHEET 2 AA1 7 SER A 32 ASN A 37 1 N ASN A 37 O PHE A 63 SHEET 3 AA1 7 VAL A 8 THR A 12 1 N CYS A 9 O ALA A 34 SHEET 4 AA1 7 ALA A 89 ASN A 92 1 O ILE A 91 N VAL A 10 SHEET 5 AA1 7 THR A 145 VAL A 150 1 O VAL A 148 N LEU A 90 SHEET 6 AA1 7 ILE A 187 PRO A 194 1 O ASN A 190 N ASN A 149 SHEET 7 AA1 7 VAL A 251 ALA A 254 1 O ILE A 252 N ALA A 193 CISPEP 1 ALA A 184 PRO A 185 0 4.82 SITE 1 AC1 19 GLY A 13 SER A 16 GLY A 17 ILE A 18 SITE 2 AC1 19 PHE A 38 THR A 42 ALA A 65 ASP A 66 SITE 3 AC1 19 VAL A 67 ALA A 94 GLY A 95 VAL A 119 SITE 4 AC1 19 HOH A 401 HOH A 453 HOH A 465 HOH A 482 SITE 5 AC1 19 HOH A 487 HOH A 507 HOH A 519 SITE 1 AC2 7 SER A 140 ALA A 141 ARG A 143 HIS A 186 SITE 2 AC2 7 LEU A 224 LYS A 225 HOH A 488 CRYST1 84.610 84.610 135.250 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007394 0.00000