HEADER PROTEIN BINDING/INHIBITOR 25-MAR-16 5IZ8 TITLE PROTEIN-PROTEIN INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOMATOUS POLYPOSIS COLI PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 407-751; COMPND 5 SYNONYM: PROTEIN APC,DELETED IN POLYPOSIS 2.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACE-ALA-GLY-GLU-ALA-LEU-ALA-ASP-NH2; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APC, DP2.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS APC, ASEF, COLON CANCER, DRUG DISCOVERY, PROTEIN BINDING-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,H.JIANG,X.YANG,F.JIANG,K.SONG,J.ZHANG REVDAT 3 08-NOV-23 5IZ8 1 REMARK REVDAT 2 23-JAN-19 5IZ8 1 JRNL REVDAT 1 05-JUL-17 5IZ8 0 JRNL AUTH H.JIANG,R.DENG,X.YANG,J.SHANG,S.LU,Y.ZHAO,K.SONG,X.LIU, JRNL AUTH 2 Q.ZHANG,Y.CHEN,Y.E.CHINN,G.WU,J.LI,G.CHEN,J.YU,J.ZHANG JRNL TITL PEPTIDOMIMETIC INHIBITORS OF APC-ASEF INTERACTION BLOCK JRNL TITL 2 COLORECTAL CANCER MIGRATION. JRNL REF NAT. CHEM. BIOL. V. 13 994 2017 JRNL REFN ESSN 1552-4469 JRNL PMID 28759015 JRNL DOI 10.1038/NCHEMBIO.2442 REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 98.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -3.23000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.756 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.387 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5348 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5186 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7223 ; 1.398 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11918 ; 1.136 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;39.830 ;24.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 977 ;16.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 834 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6051 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1189 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2717 ; 3.537 ; 5.913 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2715 ; 3.536 ; 5.912 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3388 ; 5.869 ; 8.853 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3388 ; 5.870 ; 8.853 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 3.106 ; 6.242 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2631 ; 3.106 ; 6.242 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3836 ; 5.306 ; 9.249 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6139 ; 8.807 ;45.420 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6127 ; 8.817 ;45.466 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 401 723 B 401 723 38036 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5IZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23462 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.060 REMARK 200 RESOLUTION RANGE LOW (A) : 98.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 21.50 REMARK 200 R MERGE FOR SHELL (I) : 0.81500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M TRIS PH REMARK 280 8.0, 25% W/V PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 205.53000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.76500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.14750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.38250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 256.91250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 205.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 102.76500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.38250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 154.14750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 256.91250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 398 REMARK 465 GLY A 399 REMARK 465 HIS A 400 REMARK 465 SER A 744 REMARK 465 PRO A 745 REMARK 465 GLY A 746 REMARK 465 SER A 747 REMARK 465 SER A 748 REMARK 465 LEU A 749 REMARK 465 PRO A 750 REMARK 465 SER A 751 REMARK 465 MET B 398 REMARK 465 GLY B 399 REMARK 465 GLY B 702 REMARK 465 ALA B 703 REMARK 465 VAL B 704 REMARK 465 ALA B 725 REMARK 465 LEU B 726 REMARK 465 ARG B 727 REMARK 465 ASN B 728 REMARK 465 LEU B 729 REMARK 465 MET B 730 REMARK 465 ALA B 731 REMARK 465 ASN B 732 REMARK 465 ARG B 733 REMARK 465 PRO B 734 REMARK 465 ALA B 735 REMARK 465 LYS B 736 REMARK 465 TYR B 737 REMARK 465 LYS B 738 REMARK 465 ASP B 739 REMARK 465 ALA B 740 REMARK 465 ASN B 741 REMARK 465 ILE B 742 REMARK 465 MET B 743 REMARK 465 SER B 744 REMARK 465 PRO B 745 REMARK 465 GLY B 746 REMARK 465 SER B 747 REMARK 465 SER B 748 REMARK 465 LEU B 749 REMARK 465 PRO B 750 REMARK 465 SER B 751 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 430 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 ARG A 564 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 564 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 404 54.43 31.50 REMARK 500 HIS A 427 58.53 -90.65 REMARK 500 ASP A 434 36.35 -97.72 REMARK 500 ARG A 690 41.86 37.92 REMARK 500 HIS A 712 72.64 -105.46 REMARK 500 LYS A 736 -38.32 -38.53 REMARK 500 ILE A 742 52.48 32.29 REMARK 500 GLN B 433 -3.22 66.77 REMARK 500 SER B 671 150.25 -48.04 REMARK 500 ARG B 690 41.35 39.21 REMARK 500 HIS B 712 72.67 -105.30 REMARK 500 ALA D 4 143.50 -174.68 REMARK 500 LEU D 5 173.53 -58.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and ALA C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP C 7 and NH2 C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and ALA D 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP D 7 and NH2 D 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IZ6 RELATED DB: PDB REMARK 900 RELATED ID: 5IZ9 RELATED DB: PDB REMARK 900 RELATED ID: 5IZA RELATED DB: PDB DBREF 5IZ8 A 407 751 UNP P25054 APC_HUMAN 407 751 DBREF 5IZ8 B 407 751 UNP P25054 APC_HUMAN 407 751 DBREF 5IZ8 C 0 8 PDB 5IZ8 5IZ8 0 8 DBREF 5IZ8 D 0 8 PDB 5IZ8 5IZ8 0 8 SEQADV 5IZ8 MET A 398 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 GLY A 399 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 400 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 401 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 402 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 403 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 404 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS A 405 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 MET A 406 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 MET B 398 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 GLY B 399 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 400 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 401 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 402 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 403 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 404 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 HIS B 405 UNP P25054 EXPRESSION TAG SEQADV 5IZ8 MET B 406 UNP P25054 EXPRESSION TAG SEQRES 1 A 354 MET GLY HIS HIS HIS HIS HIS HIS MET LEU HIS LEU LEU SEQRES 2 A 354 GLU GLN ILE ARG ALA TYR CYS GLU THR CYS TRP GLU TRP SEQRES 3 A 354 GLN GLU ALA HIS GLU PRO GLY MET ASP GLN ASP LYS ASN SEQRES 4 A 354 PRO MET PRO ALA PRO VAL GLU HIS GLN ILE CYS PRO ALA SEQRES 5 A 354 VAL CYS VAL LEU MET LYS LEU SER PHE ASP GLU GLU HIS SEQRES 6 A 354 ARG HIS ALA MET ASN GLU LEU GLY GLY LEU GLN ALA ILE SEQRES 7 A 354 ALA GLU LEU LEU GLN VAL ASP CYS GLU MET TYR GLY LEU SEQRES 8 A 354 THR ASN ASP HIS TYR SER ILE THR LEU ARG ARG TYR ALA SEQRES 9 A 354 GLY MET ALA LEU THR ASN LEU THR PHE GLY ASP VAL ALA SEQRES 10 A 354 ASN LYS ALA THR LEU CYS SER MET LYS GLY CYS MET ARG SEQRES 11 A 354 ALA LEU VAL ALA GLN LEU LYS SER GLU SER GLU ASP LEU SEQRES 12 A 354 GLN GLN VAL ILE ALA SER VAL LEU ARG ASN LEU SER TRP SEQRES 13 A 354 ARG ALA ASP VAL ASN SER LYS LYS THR LEU ARG GLU VAL SEQRES 14 A 354 GLY SER VAL LYS ALA LEU MET GLU CYS ALA LEU GLU VAL SEQRES 15 A 354 LYS LYS GLU SER THR LEU LYS SER VAL LEU SER ALA LEU SEQRES 16 A 354 TRP ASN LEU SER ALA HIS CYS THR GLU ASN LYS ALA ASP SEQRES 17 A 354 ILE CYS ALA VAL ASP GLY ALA LEU ALA PHE LEU VAL GLY SEQRES 18 A 354 THR LEU THR TYR ARG SER GLN THR ASN THR LEU ALA ILE SEQRES 19 A 354 ILE GLU SER GLY GLY GLY ILE LEU ARG ASN VAL SER SER SEQRES 20 A 354 LEU ILE ALA THR ASN GLU ASP HIS ARG GLN ILE LEU ARG SEQRES 21 A 354 GLU ASN ASN CYS LEU GLN THR LEU LEU GLN HIS LEU LYS SEQRES 22 A 354 SER HIS SER LEU THR ILE VAL SER ASN ALA CYS GLY THR SEQRES 23 A 354 LEU TRP ASN LEU SER ALA ARG ASN PRO LYS ASP GLN GLU SEQRES 24 A 354 ALA LEU TRP ASP MET GLY ALA VAL SER MET LEU LYS ASN SEQRES 25 A 354 LEU ILE HIS SER LYS HIS LYS MET ILE ALA MET GLY SER SEQRES 26 A 354 ALA ALA ALA LEU ARG ASN LEU MET ALA ASN ARG PRO ALA SEQRES 27 A 354 LYS TYR LYS ASP ALA ASN ILE MET SER PRO GLY SER SER SEQRES 28 A 354 LEU PRO SER SEQRES 1 B 354 MET GLY HIS HIS HIS HIS HIS HIS MET LEU HIS LEU LEU SEQRES 2 B 354 GLU GLN ILE ARG ALA TYR CYS GLU THR CYS TRP GLU TRP SEQRES 3 B 354 GLN GLU ALA HIS GLU PRO GLY MET ASP GLN ASP LYS ASN SEQRES 4 B 354 PRO MET PRO ALA PRO VAL GLU HIS GLN ILE CYS PRO ALA SEQRES 5 B 354 VAL CYS VAL LEU MET LYS LEU SER PHE ASP GLU GLU HIS SEQRES 6 B 354 ARG HIS ALA MET ASN GLU LEU GLY GLY LEU GLN ALA ILE SEQRES 7 B 354 ALA GLU LEU LEU GLN VAL ASP CYS GLU MET TYR GLY LEU SEQRES 8 B 354 THR ASN ASP HIS TYR SER ILE THR LEU ARG ARG TYR ALA SEQRES 9 B 354 GLY MET ALA LEU THR ASN LEU THR PHE GLY ASP VAL ALA SEQRES 10 B 354 ASN LYS ALA THR LEU CYS SER MET LYS GLY CYS MET ARG SEQRES 11 B 354 ALA LEU VAL ALA GLN LEU LYS SER GLU SER GLU ASP LEU SEQRES 12 B 354 GLN GLN VAL ILE ALA SER VAL LEU ARG ASN LEU SER TRP SEQRES 13 B 354 ARG ALA ASP VAL ASN SER LYS LYS THR LEU ARG GLU VAL SEQRES 14 B 354 GLY SER VAL LYS ALA LEU MET GLU CYS ALA LEU GLU VAL SEQRES 15 B 354 LYS LYS GLU SER THR LEU LYS SER VAL LEU SER ALA LEU SEQRES 16 B 354 TRP ASN LEU SER ALA HIS CYS THR GLU ASN LYS ALA ASP SEQRES 17 B 354 ILE CYS ALA VAL ASP GLY ALA LEU ALA PHE LEU VAL GLY SEQRES 18 B 354 THR LEU THR TYR ARG SER GLN THR ASN THR LEU ALA ILE SEQRES 19 B 354 ILE GLU SER GLY GLY GLY ILE LEU ARG ASN VAL SER SER SEQRES 20 B 354 LEU ILE ALA THR ASN GLU ASP HIS ARG GLN ILE LEU ARG SEQRES 21 B 354 GLU ASN ASN CYS LEU GLN THR LEU LEU GLN HIS LEU LYS SEQRES 22 B 354 SER HIS SER LEU THR ILE VAL SER ASN ALA CYS GLY THR SEQRES 23 B 354 LEU TRP ASN LEU SER ALA ARG ASN PRO LYS ASP GLN GLU SEQRES 24 B 354 ALA LEU TRP ASP MET GLY ALA VAL SER MET LEU LYS ASN SEQRES 25 B 354 LEU ILE HIS SER LYS HIS LYS MET ILE ALA MET GLY SER SEQRES 26 B 354 ALA ALA ALA LEU ARG ASN LEU MET ALA ASN ARG PRO ALA SEQRES 27 B 354 LYS TYR LYS ASP ALA ASN ILE MET SER PRO GLY SER SER SEQRES 28 B 354 LEU PRO SER SEQRES 1 C 9 ACE ALA GLY GLU ALA LEU ALA ASP NH2 SEQRES 1 D 9 ACE ALA GLY GLU ALA LEU ALA ASP NH2 HET ACE C 0 3 HET NH2 C 8 1 HET ACE D 0 3 HET NH2 D 8 1 HET PGE A 801 10 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 NH2 2(H2 N) FORMUL 5 PGE C6 H14 O4 FORMUL 6 HOH *106(H2 O) HELIX 1 AA1 HIS A 404 HIS A 427 1 24 HELIX 2 AA2 ALA A 440 HIS A 444 5 5 HELIX 3 AA3 GLN A 445 PHE A 458 1 14 HELIX 4 AA4 ASP A 459 LEU A 469 1 11 HELIX 5 AA5 GLY A 470 GLY A 487 1 18 HELIX 6 AA6 ASP A 491 PHE A 510 1 20 HELIX 7 AA7 ASP A 512 MET A 522 1 11 HELIX 8 AA8 MET A 522 GLN A 532 1 11 HELIX 9 AA9 LEU A 533 SER A 535 5 3 HELIX 10 AB1 SER A 537 TRP A 553 1 17 HELIX 11 AB2 ASP A 556 VAL A 566 1 11 HELIX 12 AB3 GLY A 567 VAL A 579 1 13 HELIX 13 AB4 LYS A 581 ALA A 597 1 17 HELIX 14 AB5 CYS A 599 ALA A 608 1 10 HELIX 15 AB6 GLY A 611 LEU A 620 1 10 HELIX 16 AB7 LEU A 629 THR A 648 1 20 HELIX 17 AB8 ASN A 649 GLU A 658 1 10 HELIX 18 AB9 ASN A 660 HIS A 668 1 9 HELIX 19 AC1 SER A 673 SER A 688 1 16 HELIX 20 AC2 ASN A 691 ASP A 700 1 10 HELIX 21 AC3 GLY A 702 ILE A 711 1 10 HELIX 22 AC4 HIS A 715 ALA A 731 1 17 HELIX 23 AC5 PRO A 734 LYS A 738 5 5 HELIX 24 AC6 HIS B 403 HIS B 427 1 25 HELIX 25 AC7 ALA B 440 HIS B 444 5 5 HELIX 26 AC8 GLN B 445 PHE B 458 1 14 HELIX 27 AC9 ASP B 459 LEU B 469 1 11 HELIX 28 AD1 GLY B 470 GLY B 487 1 18 HELIX 29 AD2 ASP B 491 PHE B 510 1 20 HELIX 30 AD3 ASP B 512 MET B 522 1 11 HELIX 31 AD4 MET B 522 GLN B 532 1 11 HELIX 32 AD5 LEU B 533 SER B 535 5 3 HELIX 33 AD6 SER B 537 TRP B 553 1 17 HELIX 34 AD7 ASP B 556 VAL B 566 1 11 HELIX 35 AD8 GLY B 567 VAL B 579 1 13 HELIX 36 AD9 LYS B 581 ALA B 597 1 17 HELIX 37 AE1 CYS B 599 ALA B 608 1 10 HELIX 38 AE2 GLY B 611 LEU B 620 1 10 HELIX 39 AE3 LEU B 629 THR B 648 1 20 HELIX 40 AE4 ASN B 649 GLU B 658 1 10 HELIX 41 AE5 ASN B 660 HIS B 668 1 9 HELIX 42 AE6 SER B 673 SER B 688 1 16 HELIX 43 AE7 ASN B 691 ASP B 700 1 10 HELIX 44 AE8 MET B 706 ILE B 711 1 6 HELIX 45 AE9 HIS B 715 ALA B 724 1 10 LINK C ACE C 0 N ALA C 1 1555 1555 1.34 LINK C ASP C 7 N NH2 C 8 1555 1555 1.42 LINK C ACE D 0 N ALA D 1 1555 1555 1.35 LINK C ASP D 7 N NH2 D 8 1555 1555 1.42 SITE 1 AC1 6 HIS A 402 HIS A 403 HIS A 404 HIS A 405 SITE 2 AC1 6 MET A 406 HOH A 956 SITE 1 AC2 6 ARG A 549 SER A 590 TRP A 593 ASN A 594 SITE 2 AC2 6 HOH B 804 GLY C 2 SITE 1 AC3 2 GLN A 542 ALA C 6 SITE 1 AC4 5 ARG B 549 SER B 590 TRP B 593 ASN B 594 SITE 2 AC4 5 GLY D 2 SITE 1 AC5 1 ALA D 6 CRYST1 114.073 114.073 308.295 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008766 0.005061 0.000000 0.00000 SCALE2 0.000000 0.010122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003244 0.00000