HEADER SIGNALING PROTEIN 25-MAR-16 5IZB TITLE MURIN CXCL13 SOLUTION STRUCTURE FEATURING A FOLDED N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-X-C MOTIF CHEMOKINE 13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B LYMPHOCYTE CHEMOATTRACTANT,CXC CHEMOKINE BLC,SMALL- COMPND 5 INDUCIBLE CYTOKINE B13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CXCL13, BLC, SCYB13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B KEYWDS CHEMOKINE STRUCTURE N-TERMINAL DOMAIN CONFORMATIONAL EXCHANGE, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.R.MONNEAU,H.LORTAT-JACOB REVDAT 4 14-JUN-23 5IZB 1 REMARK REVDAT 3 08-MAY-19 5IZB 1 REMARK REVDAT 2 06-SEP-17 5IZB 1 SHEET SSBOND REVDAT 1 05-APR-17 5IZB 0 JRNL AUTH Y.R.MONNEAU,L.LUO,R.VIVES,F.ARENZANA-SEIDEDOS,H.LORTAT-JACOB JRNL TITL MURIN CXCL13 SOLUTION STRUCTURE FEATURING A FOLDED JRNL TITL 2 N-TERMINAL DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN PRESENCE OF WATER REMARK 4 REMARK 4 5IZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219466. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 850 UM U-[15N] CXCL13, 95% REMARK 210 H2O/5% D2O; 280 UM U-[13C,15N] REMARK 210 CXCL13, 100% D2O; 280 UM U-[13C, REMARK 210 15N] CXCL13, 95% H2O/5% D2O; 280 REMARK 210 UM [U-10% 13C; U-100% 15N] REMARK 210 CXCL13, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-EDITED NOESY; 3D 13C REMARK 210 -EDITED NOESY; 3D 13C-HMQC-NOESY- REMARK 210 13C,1H-HMQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HACACO; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C CT-HSQC ALIPHATIC; 2D REMARK 210 COSYDQF; 2D TOCSY; 2D CBCGCDHD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 950 MHZ; 850 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 15 87.57 -65.05 REMARK 500 1 PRO A 35 76.96 -68.13 REMARK 500 2 TYR A 7 -51.23 -137.65 REMARK 500 2 LYS A 11 46.53 -154.50 REMARK 500 2 CYS A 12 107.24 -57.16 REMARK 500 2 PRO A 35 83.20 -68.73 REMARK 500 2 ASN A 37 62.10 60.98 REMARK 500 2 SER A 84 -71.76 -94.76 REMARK 500 2 LYS A 85 149.54 -175.89 REMARK 500 3 ASN A 9 -117.18 -146.50 REMARK 500 3 LEU A 10 -54.01 -174.67 REMARK 500 4 THR A 8 -72.35 -74.58 REMARK 500 4 ASN A 9 89.72 56.66 REMARK 500 4 GLN A 71 57.63 -90.72 REMARK 500 4 SER A 72 75.84 46.20 REMARK 500 4 SER A 84 -70.36 -75.56 REMARK 500 5 TYR A 7 -50.07 -135.71 REMARK 500 5 ASN A 9 4.51 -68.44 REMARK 500 5 ASN A 37 -69.00 75.20 REMARK 500 5 GLN A 71 -152.82 -88.55 REMARK 500 5 SER A 76 27.72 -172.41 REMARK 500 5 ARG A 86 75.98 61.79 REMARK 500 6 LEU A 10 140.52 -173.50 REMARK 500 6 CYS A 12 105.26 -59.06 REMARK 500 6 LYS A 85 -168.78 -77.25 REMARK 500 7 ILE A 2 96.51 -62.45 REMARK 500 7 ASN A 9 89.53 -69.80 REMARK 500 7 LYS A 73 102.24 -55.71 REMARK 500 7 SER A 77 178.47 64.42 REMARK 500 8 LYS A 73 94.07 -164.88 REMARK 500 8 SER A 74 37.25 -87.97 REMARK 500 8 SER A 76 -160.23 -128.78 REMARK 500 8 VAL A 83 72.53 -110.24 REMARK 500 8 ARG A 87 76.92 -68.09 REMARK 500 9 TYR A 7 -25.77 -151.40 REMARK 500 9 ASN A 9 93.57 -63.86 REMARK 500 9 LYS A 11 102.55 -51.55 REMARK 500 9 SER A 19 30.95 -91.44 REMARK 500 9 SER A 84 89.29 -68.81 REMARK 500 9 LYS A 85 -162.16 -103.42 REMARK 500 10 LEU A 10 97.36 -170.23 REMARK 500 10 SER A 72 81.28 -64.46 REMARK 500 10 LYS A 73 -79.30 -84.28 REMARK 500 10 SER A 74 163.38 176.32 REMARK 500 10 SER A 77 99.37 -61.86 REMARK 500 11 LYS A 11 94.70 -61.18 REMARK 500 11 PRO A 35 -167.76 -77.92 REMARK 500 11 GLN A 71 41.90 -81.02 REMARK 500 12 LYS A 11 107.70 -167.99 REMARK 500 12 SER A 19 48.30 -97.10 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30042 RELATED DB: BMRB DBREF 5IZB A 2 89 UNP O55038 CXL13_MOUSE 22 109 SEQADV 5IZB MET A 1 UNP O55038 INITIATING METHIONINE SEQRES 1 A 89 MET ILE LEU GLU ALA HIS TYR THR ASN LEU LYS CYS ARG SEQRES 2 A 89 CYS SER GLY VAL ILE SER THR VAL VAL GLY LEU ASN ILE SEQRES 3 A 89 ILE ASP ARG ILE GLN VAL THR PRO PRO GLY ASN GLY CYS SEQRES 4 A 89 PRO LYS THR GLU VAL VAL ILE TRP THR LYS MET LYS LYS SEQRES 5 A 89 VAL ILE CYS VAL ASN PRO ARG ALA LYS TRP LEU GLN ARG SEQRES 6 A 89 LEU LEU ARG HIS VAL GLN SER LYS SER LEU SER SER THR SEQRES 7 A 89 PRO GLN ALA PRO VAL SER LYS ARG ARG ALA ALA HELIX 1 AA1 ALA A 60 VAL A 70 1 11 SHEET 1 AA1 4 ILE A 2 ALA A 5 0 SHEET 2 AA1 4 ILE A 27 THR A 33 1 O VAL A 32 N GLU A 4 SHEET 3 AA1 4 GLU A 43 THR A 48 -1 O VAL A 45 N GLN A 31 SHEET 4 AA1 4 VAL A 53 VAL A 56 -1 O ILE A 54 N ILE A 46 SSBOND 1 CYS A 12 CYS A 39 1555 1555 2.04 SSBOND 2 CYS A 14 CYS A 55 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1