HEADER LYASE 26-MAR-16 5J04 TITLE CRYSTAL STRUCTURE OF ENOLASE FROM SYNECHOCOCCUS ELONGATUS, COMPLEX TITLE 2 WITH PHOSPHOENOLPYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942 = FACHB-805; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: ENO, SYNPCC7942_0639; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ REVDAT 4 28-FEB-24 5J04 1 SOURCE DBREF REVDAT 3 27-SEP-23 5J04 1 REMARK REVDAT 2 13-APR-22 5J04 1 COMPND SOURCE AUTHOR JRNL REVDAT 2 2 1 REMARK DBREF SEQRES HET REVDAT 2 3 1 HETNAM FORMUL HELIX SHEET REVDAT 2 4 1 LINK SITE SCALE ATOM REVDAT 1 20-APR-16 5J04 0 JRNL AUTH J.M.GONZALEZ,R.MARTI-ARBONA,J.C.-H.CHEN,C.J.UNKEFER JRNL TITL THE STRUCTURE OF SYNECHOCOCCUS ELONGATUS ENOLASE REVEALS KEY JRNL TITL 2 ASPECTS OF PHOSPHOENOLPYRUVATE BINDING JRNL REF ACTA CRYSTALLOGR.,SECT.F V. F78 177 2022 JRNL REFN ESSN 2053-230X JRNL DOI 10.1107/S2053230X22003612 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.04000 REMARK 3 B22 (A**2) : -2.04000 REMARK 3 B33 (A**2) : 4.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.314 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.035 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6396 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6113 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8685 ; 1.574 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14061 ; 1.327 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 846 ; 6.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;39.362 ;23.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;15.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;18.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 854 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7424 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1356 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3392 ; 2.339 ; 3.077 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3390 ; 2.332 ; 3.076 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4234 ; 3.489 ; 4.608 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4235 ; 3.488 ; 4.609 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3004 ; 2.761 ; 3.370 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3005 ; 2.760 ; 3.371 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4452 ; 4.345 ; 4.935 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6919 ; 5.551 ;36.566 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6910 ; 5.543 ;36.556 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 428 B 5 428 13171 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5J04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 82.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG200, 150-200MM CAACETATE, REMARK 280 0.1M HEPES PH 7.5, 10MM PEP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.11500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.11500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.11500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.11500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 102410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -396.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 164.23000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 82.11500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -82.11500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 82.11500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 82.11500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 680 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 VAL B 263 CG1 CG2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 603 O HOH B 617 1.81 REMARK 500 OE1 GLU B 55 O HOH B 601 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 408 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 153 -37.60 -138.27 REMARK 500 ASP A 161 73.11 -114.10 REMARK 500 ASP A 294 59.70 -91.19 REMARK 500 ASP A 314 -79.95 -109.49 REMARK 500 ASN A 334 14.03 -145.93 REMARK 500 SER A 393 -158.62 -84.82 REMARK 500 ARG A 396 122.84 84.94 REMARK 500 VAL B 153 -39.06 -136.41 REMARK 500 ASP B 161 75.16 -114.00 REMARK 500 GLN B 240 -60.01 -103.62 REMARK 500 ASP B 314 -80.81 -109.98 REMARK 500 ASN B 334 14.65 -144.57 REMARK 500 SER B 393 -158.11 -84.76 REMARK 500 ARG B 396 123.61 82.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 49 THR A 50 -149.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 46 O REMARK 620 2 PEP A 501 O1P 90.9 REMARK 620 3 HOH A 618 O 172.9 82.0 REMARK 620 4 HOH A 646 O 97.7 80.8 81.7 REMARK 620 5 HOH A 662 O 114.4 154.7 72.7 94.8 REMARK 620 6 HOH A 679 O 87.4 82.7 91.3 162.7 98.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 48 O REMARK 620 2 THR A 48 OG1 65.3 REMARK 620 3 GLU A 292 OE1 137.0 92.9 REMARK 620 4 GLU A 292 OE2 85.6 69.1 51.4 REMARK 620 5 HOH A 677 O 133.5 161.2 72.1 107.5 REMARK 620 6 HOH A 695 O 123.0 77.7 83.7 120.3 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 162 O REMARK 620 2 HOH A 678 O 72.3 REMARK 620 3 HOH A 690 O 69.1 82.7 REMARK 620 4 HOH A 704 O 92.9 165.2 91.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 246 OD2 REMARK 620 2 GLU A 287 OE2 79.8 REMARK 620 3 ASP A 314 OD2 162.5 84.3 REMARK 620 4 PEP A 501 O1 108.3 99.4 81.4 REMARK 620 5 HOH A 613 O 77.6 94.6 96.5 165.6 REMARK 620 6 HOH A 618 O 144.0 136.1 51.9 73.9 93.5 REMARK 620 7 HOH A 684 O 93.8 173.4 102.3 80.9 85.7 50.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 46 O REMARK 620 2 PEP B 501 O2P 107.3 REMARK 620 3 HOH B 632 O 169.9 82.7 REMARK 620 4 HOH B 660 O 91.0 93.0 86.7 REMARK 620 5 HOH B 676 O 89.4 90.4 92.2 176.3 REMARK 620 6 HOH B 678 O 90.7 160.0 79.7 95.5 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 48 O REMARK 620 2 GLU B 292 OE1 106.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 246 OD2 REMARK 620 2 GLU B 287 OE2 78.3 REMARK 620 3 ASP B 314 OD2 161.3 83.3 REMARK 620 4 PEP B 501 O2' 113.8 111.9 75.9 REMARK 620 5 HOH B 619 O 83.4 88.0 93.0 155.5 REMARK 620 6 HOH B 649 O 104.0 177.7 94.4 67.3 92.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ROP RELATED DB: PDB REMARK 900 APOENZYME DBREF 5J04 A 5 428 UNP Q31QJ8 ENO_SYNE7 5 428 DBREF 5J04 B 5 428 UNP Q31QJ8 ENO_SYNE7 5 428 SEQRES 1 A 424 TYR GLY THR GLN ILE ALA GLU ILE THR ALA ARG GLU ILE SEQRES 2 A 424 LEU ASP SER ARG GLY ARG PRO THR VAL GLU ALA GLU VAL SEQRES 3 A 424 HIS LEU GLU ASP GLY SER VAL GLY LEU ALA GLN VAL PRO SEQRES 4 A 424 SER GLY ALA SER THR GLY THR PHE GLU ALA HIS GLU LEU SEQRES 5 A 424 ARG ASP ASP ASP PRO SER ARG TYR GLY GLY LYS GLY VAL SEQRES 6 A 424 GLN LYS ALA VAL GLU ASN VAL SER ALA ILE GLU ASP ALA SEQRES 7 A 424 LEU ILE GLY LEU SER ALA LEU ASP GLN GLU GLY LEU ASP SEQRES 8 A 424 LYS ALA MET ILE ALA LEU ASP GLY THR PRO ASN LYS LYS SEQRES 9 A 424 ASN LEU GLY ALA ASN ALA ILE LEU ALA VAL SER LEU ALA SEQRES 10 A 424 THR ALA HIS ALA ALA ALA THR SER LEU ASN LEU PRO LEU SEQRES 11 A 424 TYR ARG TYR LEU GLY GLY PRO LEU ALA ASN VAL LEU PRO SEQRES 12 A 424 VAL PRO MET MET ASN VAL ILE ASN GLY GLY ALA HIS ALA SEQRES 13 A 424 ASP ASN ASN VAL ASP PHE GLN GLU PHE MET ILE MET PRO SEQRES 14 A 424 VAL GLY ALA PRO SER PHE LYS GLU ALA LEU ARG TRP GLY SEQRES 15 A 424 ALA GLU VAL PHE HIS ALA LEU ALA LYS VAL LEU LYS ASP SEQRES 16 A 424 LYS GLY LEU ALA THR GLY VAL GLY ASP GLU GLY GLY PHE SEQRES 17 A 424 ALA PRO ASN LEU GLY SER ASN LYS GLU ALA LEU GLU LEU SEQRES 18 A 424 LEU LEU THR ALA ILE GLU ALA ALA GLY TYR LYS PRO GLY SEQRES 19 A 424 GLU GLN VAL ALA LEU ALA MET ASP VAL ALA SER SER GLU SEQRES 20 A 424 PHE TYR LYS ASN GLY LEU TYR THR CYS ASP GLY VAL SER SEQRES 21 A 424 HIS GLU PRO ALA GLY MET ILE GLY ILE LEU ALA ASP LEU SEQRES 22 A 424 VAL SER GLN TYR PRO ILE VAL SER ILE GLU ASP GLY LEU SEQRES 23 A 424 GLN GLU ASP ASP TRP SER ASN TRP LYS THR LEU THR GLN SEQRES 24 A 424 GLN LEU GLY SER THR VAL GLN LEU VAL GLY ASP ASP LEU SEQRES 25 A 424 PHE VAL THR ASN PRO ASP ARG LEU GLN SER GLY ILE GLU SEQRES 26 A 424 GLN GLY VAL GLY ASN ALA VAL LEU ILE LYS LEU ASN GLN SEQRES 27 A 424 ILE GLY THR LEU THR GLU THR LEU ARG THR ILE ASP LEU SEQRES 28 A 424 ALA THR ARG SER GLY TYR ARG SER VAL ILE SER HIS ARG SEQRES 29 A 424 SER GLY GLU THR GLU ASP THR THR ILE ALA ASP LEU ALA SEQRES 30 A 424 VAL ALA THR ARG ALA GLY GLN ILE LYS THR GLY SER LEU SEQRES 31 A 424 SER ARG SER GLU ARG ILE ALA LYS TYR ASN ARG LEU LEU SEQRES 32 A 424 ARG ILE GLU ALA ALA LEU GLY GLU ASN ALA LEU TYR ALA SEQRES 33 A 424 GLY ALA ILE GLY LEU GLY PRO LYS SEQRES 1 B 424 TYR GLY THR GLN ILE ALA GLU ILE THR ALA ARG GLU ILE SEQRES 2 B 424 LEU ASP SER ARG GLY ARG PRO THR VAL GLU ALA GLU VAL SEQRES 3 B 424 HIS LEU GLU ASP GLY SER VAL GLY LEU ALA GLN VAL PRO SEQRES 4 B 424 SER GLY ALA SER THR GLY THR PHE GLU ALA HIS GLU LEU SEQRES 5 B 424 ARG ASP ASP ASP PRO SER ARG TYR GLY GLY LYS GLY VAL SEQRES 6 B 424 GLN LYS ALA VAL GLU ASN VAL SER ALA ILE GLU ASP ALA SEQRES 7 B 424 LEU ILE GLY LEU SER ALA LEU ASP GLN GLU GLY LEU ASP SEQRES 8 B 424 LYS ALA MET ILE ALA LEU ASP GLY THR PRO ASN LYS LYS SEQRES 9 B 424 ASN LEU GLY ALA ASN ALA ILE LEU ALA VAL SER LEU ALA SEQRES 10 B 424 THR ALA HIS ALA ALA ALA THR SER LEU ASN LEU PRO LEU SEQRES 11 B 424 TYR ARG TYR LEU GLY GLY PRO LEU ALA ASN VAL LEU PRO SEQRES 12 B 424 VAL PRO MET MET ASN VAL ILE ASN GLY GLY ALA HIS ALA SEQRES 13 B 424 ASP ASN ASN VAL ASP PHE GLN GLU PHE MET ILE MET PRO SEQRES 14 B 424 VAL GLY ALA PRO SER PHE LYS GLU ALA LEU ARG TRP GLY SEQRES 15 B 424 ALA GLU VAL PHE HIS ALA LEU ALA LYS VAL LEU LYS ASP SEQRES 16 B 424 LYS GLY LEU ALA THR GLY VAL GLY ASP GLU GLY GLY PHE SEQRES 17 B 424 ALA PRO ASN LEU GLY SER ASN LYS GLU ALA LEU GLU LEU SEQRES 18 B 424 LEU LEU THR ALA ILE GLU ALA ALA GLY TYR LYS PRO GLY SEQRES 19 B 424 GLU GLN VAL ALA LEU ALA MET ASP VAL ALA SER SER GLU SEQRES 20 B 424 PHE TYR LYS ASN GLY LEU TYR THR CYS ASP GLY VAL SER SEQRES 21 B 424 HIS GLU PRO ALA GLY MET ILE GLY ILE LEU ALA ASP LEU SEQRES 22 B 424 VAL SER GLN TYR PRO ILE VAL SER ILE GLU ASP GLY LEU SEQRES 23 B 424 GLN GLU ASP ASP TRP SER ASN TRP LYS THR LEU THR GLN SEQRES 24 B 424 GLN LEU GLY SER THR VAL GLN LEU VAL GLY ASP ASP LEU SEQRES 25 B 424 PHE VAL THR ASN PRO ASP ARG LEU GLN SER GLY ILE GLU SEQRES 26 B 424 GLN GLY VAL GLY ASN ALA VAL LEU ILE LYS LEU ASN GLN SEQRES 27 B 424 ILE GLY THR LEU THR GLU THR LEU ARG THR ILE ASP LEU SEQRES 28 B 424 ALA THR ARG SER GLY TYR ARG SER VAL ILE SER HIS ARG SEQRES 29 B 424 SER GLY GLU THR GLU ASP THR THR ILE ALA ASP LEU ALA SEQRES 30 B 424 VAL ALA THR ARG ALA GLY GLN ILE LYS THR GLY SER LEU SEQRES 31 B 424 SER ARG SER GLU ARG ILE ALA LYS TYR ASN ARG LEU LEU SEQRES 32 B 424 ARG ILE GLU ALA ALA LEU GLY GLU ASN ALA LEU TYR ALA SEQRES 33 B 424 GLY ALA ILE GLY LEU GLY PRO LYS HET PEP A 501 10 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET ACT A 506 4 HET PEP B 501 10 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET ACT B 505 4 HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 3 PEP 2(C3 H5 O6 P) FORMUL 4 CA 7(CA 2+) FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 14 HOH *191(H2 O) HELIX 1 AA1 ARG A 63 LYS A 67 5 5 HELIX 2 AA2 VAL A 69 ILE A 84 1 16 HELIX 3 AA3 ASP A 90 GLY A 103 1 14 HELIX 4 AA4 GLY A 111 LEU A 130 1 20 HELIX 5 AA5 PRO A 133 GLY A 140 1 8 HELIX 6 AA6 GLY A 157 ALA A 160 5 4 HELIX 7 AA7 SER A 178 LYS A 200 1 23 HELIX 8 AA8 SER A 218 GLY A 234 1 17 HELIX 9 AA9 ALA A 248 GLU A 251 5 4 HELIX 10 AB1 GLU A 266 TYR A 281 1 16 HELIX 11 AB2 ASP A 294 GLY A 306 1 13 HELIX 12 AB3 ASN A 320 GLY A 331 1 12 HELIX 13 AB4 LYS A 339 GLY A 344 1 6 HELIX 14 AB5 THR A 345 SER A 359 1 15 HELIX 15 AB6 THR A 375 THR A 384 1 10 HELIX 16 AB7 ARG A 396 GLY A 414 1 19 HELIX 17 AB8 GLU A 415 ALA A 417 5 3 HELIX 18 AB9 ARG B 63 LYS B 67 5 5 HELIX 19 AC1 VAL B 69 ILE B 84 1 16 HELIX 20 AC2 ASP B 90 GLY B 103 1 14 HELIX 21 AC3 GLY B 111 LEU B 130 1 20 HELIX 22 AC4 PRO B 133 GLY B 140 1 8 HELIX 23 AC5 GLY B 157 ALA B 160 5 4 HELIX 24 AC6 SER B 178 LYS B 200 1 23 HELIX 25 AC7 SER B 218 ALA B 233 1 16 HELIX 26 AC8 ALA B 248 GLU B 251 5 4 HELIX 27 AC9 GLU B 266 TYR B 281 1 16 HELIX 28 AD1 ASP B 294 GLY B 306 1 13 HELIX 29 AD2 ASN B 320 GLN B 330 1 11 HELIX 30 AD3 LYS B 339 GLY B 344 1 6 HELIX 31 AD4 THR B 345 SER B 359 1 15 HELIX 32 AD5 THR B 375 THR B 384 1 10 HELIX 33 AD6 ARG B 396 GLY B 414 1 19 HELIX 34 AD7 GLU B 415 ALA B 417 5 3 SHEET 1 AA1 3 ILE A 9 LEU A 18 0 SHEET 2 AA1 3 PRO A 24 LEU A 32 -1 O GLU A 29 N THR A 13 SHEET 3 AA1 3 VAL A 37 GLN A 41 -1 O GLY A 38 N VAL A 30 SHEET 1 AA2 2 VAL A 145 LEU A 146 0 SHEET 2 AA2 2 LEU A 418 TYR A 419 1 O LEU A 418 N LEU A 146 SHEET 1 AA3 9 VAL A 148 PRO A 149 0 SHEET 2 AA3 9 GLY A 387 LYS A 390 1 O GLY A 387 N VAL A 148 SHEET 3 AA3 9 ARG A 362 SER A 366 1 N ILE A 365 O LYS A 390 SHEET 4 AA3 9 ALA A 335 ILE A 338 1 N ILE A 338 O VAL A 364 SHEET 5 AA3 9 GLN A 310 GLY A 313 1 N GLY A 313 O LEU A 337 SHEET 6 AA3 9 ILE A 283 GLU A 287 1 N VAL A 284 O GLN A 310 SHEET 7 AA3 9 ALA A 242 ASP A 246 1 N LEU A 243 O VAL A 284 SHEET 8 AA3 9 GLU A 168 MET A 172 -1 N MET A 170 O ALA A 244 SHEET 9 AA3 9 MET A 151 ASN A 155 -1 N MET A 151 O ILE A 171 SHEET 1 AA4 3 TYR A 253 LYS A 254 0 SHEET 2 AA4 3 LEU A 257 CYS A 260 -1 O LEU A 257 N LYS A 254 SHEET 3 AA4 3 VAL A 263 HIS A 265 -1 O HIS A 265 N TYR A 258 SHEET 1 AA5 3 ILE B 9 LEU B 18 0 SHEET 2 AA5 3 PRO B 24 LEU B 32 -1 O GLU B 29 N THR B 13 SHEET 3 AA5 3 VAL B 37 GLN B 41 -1 O GLY B 38 N VAL B 30 SHEET 1 AA6 2 VAL B 145 LEU B 146 0 SHEET 2 AA6 2 LEU B 418 TYR B 419 1 O LEU B 418 N LEU B 146 SHEET 1 AA7 9 VAL B 148 PRO B 149 0 SHEET 2 AA7 9 GLY B 387 LYS B 390 1 O GLY B 387 N VAL B 148 SHEET 3 AA7 9 ARG B 362 SER B 366 1 N ILE B 365 O LYS B 390 SHEET 4 AA7 9 ALA B 335 ILE B 338 1 N ILE B 338 O VAL B 364 SHEET 5 AA7 9 GLN B 310 GLY B 313 1 N GLY B 313 O LEU B 337 SHEET 6 AA7 9 ILE B 283 GLU B 287 1 N VAL B 284 O GLN B 310 SHEET 7 AA7 9 ALA B 242 ASP B 246 1 N LEU B 243 O VAL B 284 SHEET 8 AA7 9 GLU B 168 MET B 172 -1 N MET B 170 O ALA B 244 SHEET 9 AA7 9 MET B 151 ASN B 155 -1 N MET B 151 O ILE B 171 SHEET 1 AA8 3 TYR B 253 LYS B 254 0 SHEET 2 AA8 3 LEU B 257 CYS B 260 -1 O LEU B 257 N LYS B 254 SHEET 3 AA8 3 VAL B 263 HIS B 265 -1 O HIS B 265 N TYR B 258 LINK O ALA A 46 CA CA A 503 1555 1555 2.44 LINK O THR A 48 CA CA A 505 1555 1555 2.40 LINK OG1 THR A 48 CA CA A 505 1555 1555 2.83 LINK O ASN A 162 CA CA A 504 1555 1555 2.44 LINK OD2 ASP A 246 CA CA A 502 1555 1555 2.32 LINK OE2 GLU A 287 CA CA A 502 1555 1555 2.34 LINK OE1 GLU A 292 CA CA A 505 1555 1555 2.53 LINK OE2 GLU A 292 CA CA A 505 1555 1555 2.56 LINK OD2 ASP A 314 CA CA A 502 1555 1555 2.46 LINK O1 PEP A 501 CA CA A 502 1555 1555 2.42 LINK O1P PEP A 501 CA CA A 503 1555 1555 2.46 LINK CA CA A 502 O HOH A 613 1555 1555 2.31 LINK CA CA A 502 O HOH A 618 1555 1555 3.13 LINK CA CA A 502 O HOH A 684 1555 1555 2.16 LINK CA CA A 503 O HOH A 618 1555 1555 2.81 LINK CA CA A 503 O HOH A 646 1555 1555 2.43 LINK CA CA A 503 O HOH A 662 1555 1555 2.23 LINK CA CA A 503 O HOH A 679 1555 1555 2.49 LINK CA CA A 504 O HOH A 678 1555 1555 2.36 LINK CA CA A 504 O HOH A 690 1555 1555 2.73 LINK CA CA A 504 O HOH A 704 1555 1555 2.03 LINK CA CA A 505 O HOH A 677 1555 1555 2.28 LINK CA CA A 505 O HOH A 695 1555 1555 2.44 LINK O ALA B 46 CA CA B 503 1555 1555 2.47 LINK O THR B 48 CA CA B 504 1555 1555 2.18 LINK OD2 ASP B 246 CA CA B 502 1555 1555 2.32 LINK OE2 GLU B 287 CA CA B 502 1555 1555 2.37 LINK OE1 GLU B 292 CA CA B 504 1555 1555 2.61 LINK OD2 ASP B 314 CA CA B 502 1555 1555 2.47 LINK O2' PEP B 501 CA CA B 502 1555 1555 2.63 LINK O2P PEP B 501 CA CA B 503 1555 1555 2.76 LINK CA CA B 502 O HOH B 619 1555 1555 2.41 LINK CA CA B 502 O HOH B 649 1555 1555 2.31 LINK CA CA B 503 O HOH B 632 1555 1555 2.65 LINK CA CA B 503 O HOH B 660 1555 1555 2.34 LINK CA CA B 503 O HOH B 676 1555 1555 2.62 LINK CA CA B 503 O HOH B 678 1555 1555 2.24 CRYST1 164.230 164.230 72.680 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013759 0.00000