HEADER PROTEIN BINDING 29-MAR-16 5J17 TITLE SOLUTION STRUCTURE OF RAS BINDING DOMAIN (RBD) OF B-RAF COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 151-232; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF,P94,V-RAF MURINE SARCOMA VIRAL ONCOGENE COMPND 6 HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET29A KEYWDS MAPK, PI3K, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.DUTTA,R.VASQUEZ-DEL CARPIO,A.K.AGGARWAL,E.P.REDDY REVDAT 4 14-JUN-23 5J17 1 REMARK REVDAT 3 04-DEC-19 5J17 1 REMARK REVDAT 2 20-SEP-17 5J17 1 COMPND REVDAT 1 05-OCT-16 5J17 0 JRNL AUTH S.K.ATHULURI-DIVAKAR,R.VASQUEZ-DEL CARPIO,K.DUTTA,S.J.BAKER, JRNL AUTH 2 S.C.COSENZA,I.BASU,Y.K.GUPTA,M.V.REDDY,L.UENO,J.R.HART, JRNL AUTH 3 P.K.VOGT,D.MULHOLLAND,C.GUHA,A.K.AGGARWAL,E.P.REDDY JRNL TITL A SMALL MOLECULE RAS-MIMETIC DISRUPTS RAS ASSOCIATION WITH JRNL TITL 2 EFFECTOR PROTEINS TO BLOCK SIGNALING. JRNL REF CELL V. 165 643 2016 JRNL REFN ISSN 1097-4172 JRNL PMID 27104980 JRNL DOI 10.1016/J.CELL.2016.03.045 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000218184. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 UM [U-99% 15N] B-RAF RBD, REMARK 210 90% H2O/10% D2O; 200 UM [U-99% REMARK 210 13C; U-99% 15N] B-RAF RBD, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRVIEW REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1024 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 LEU A 143 REMARK 465 GLU A 144 REMARK 465 VAL A 145 REMARK 465 LEU A 146 REMARK 465 PHE A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 149 REMARK 465 PRO A 150 REMARK 465 PRO A 231 REMARK 465 LEU A 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 213 HG SER A 215 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 152 92.60 -61.38 REMARK 500 1 GLN A 201 -149.83 -89.14 REMARK 500 1 ASP A 202 80.36 -56.73 REMARK 500 1 LEU A 217 31.64 -99.87 REMARK 500 2 ALA A 171 91.45 -67.13 REMARK 500 2 GLN A 201 -143.65 -83.96 REMARK 500 2 ASP A 202 78.28 -60.26 REMARK 500 2 ASN A 229 26.06 -146.05 REMARK 500 3 GLN A 201 -146.32 -88.32 REMARK 500 3 ASP A 202 79.22 -57.95 REMARK 500 4 CYS A 194 37.53 -98.11 REMARK 500 4 GLN A 201 -147.30 -78.13 REMARK 500 4 ASP A 202 79.63 -55.44 REMARK 500 4 ASN A 229 76.89 -114.69 REMARK 500 5 GLN A 201 -150.31 -88.16 REMARK 500 5 ASP A 202 79.61 -58.61 REMARK 500 6 PRO A 152 86.44 -65.33 REMARK 500 6 CYS A 194 34.13 -99.16 REMARK 500 6 GLN A 201 -141.02 -87.11 REMARK 500 6 ASP A 202 77.60 -59.64 REMARK 500 7 ALA A 171 89.49 -69.16 REMARK 500 7 GLN A 201 -145.15 -76.55 REMARK 500 7 ASP A 202 79.82 -57.18 REMARK 500 7 ASN A 229 23.01 -160.10 REMARK 500 8 ALA A 171 95.16 -69.92 REMARK 500 8 GLN A 201 -146.53 -83.78 REMARK 500 8 ASP A 202 79.60 -61.31 REMARK 500 8 ASN A 229 29.52 -161.79 REMARK 500 9 PRO A 162 153.47 -48.66 REMARK 500 9 GLN A 201 -142.34 -88.52 REMARK 500 9 ASP A 202 79.73 -58.22 REMARK 500 10 ALA A 171 99.96 -61.75 REMARK 500 10 GLN A 201 -147.21 -76.82 REMARK 500 10 ASP A 202 77.83 -62.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30047 RELATED DB: BMRB REMARK 900 RELATED ID: 5J18 RELATED DB: PDB REMARK 900 RELATED ID: 5J2R RELATED DB: PDB DBREF 5J17 A 151 232 UNP P15056 BRAF_HUMAN 151 232 SEQADV 5J17 GLY A 141 UNP P15056 EXPRESSION TAG SEQADV 5J17 SER A 142 UNP P15056 EXPRESSION TAG SEQADV 5J17 LEU A 143 UNP P15056 EXPRESSION TAG SEQADV 5J17 GLU A 144 UNP P15056 EXPRESSION TAG SEQADV 5J17 VAL A 145 UNP P15056 EXPRESSION TAG SEQADV 5J17 LEU A 146 UNP P15056 EXPRESSION TAG SEQADV 5J17 PHE A 147 UNP P15056 EXPRESSION TAG SEQADV 5J17 GLN A 148 UNP P15056 EXPRESSION TAG SEQADV 5J17 GLY A 149 UNP P15056 EXPRESSION TAG SEQADV 5J17 PRO A 150 UNP P15056 EXPRESSION TAG SEQRES 1 A 92 GLY SER LEU GLU VAL LEU PHE GLN GLY PRO SER PRO GLN SEQRES 2 A 92 LYS PRO ILE VAL ARG VAL PHE LEU PRO ASN LYS GLN ARG SEQRES 3 A 92 THR VAL VAL PRO ALA ARG CYS GLY VAL THR VAL ARG ASP SEQRES 4 A 92 SER LEU LYS LYS ALA LEU MET MET ARG GLY LEU ILE PRO SEQRES 5 A 92 GLU CYS CYS ALA VAL TYR ARG ILE GLN ASP GLY GLU LYS SEQRES 6 A 92 LYS PRO ILE GLY TRP ASP THR ASP ILE SER TRP LEU THR SEQRES 7 A 92 GLY GLU GLU LEU HIS VAL GLU VAL LEU GLU ASN VAL PRO SEQRES 8 A 92 LEU HELIX 1 AA1 THR A 176 MET A 187 1 12 HELIX 2 AA2 ILE A 191 GLU A 193 5 3 HELIX 3 AA3 ASP A 213 THR A 218 5 6 SHEET 1 AA1 5 THR A 167 PRO A 170 0 SHEET 2 AA1 5 ILE A 156 PHE A 160 -1 N VAL A 159 O THR A 167 SHEET 3 AA1 5 GLU A 221 VAL A 226 1 O VAL A 224 N PHE A 160 SHEET 4 AA1 5 CYS A 195 ILE A 200 -1 N TYR A 198 O HIS A 223 SHEET 5 AA1 5 LYS A 205 ILE A 208 -1 O ILE A 208 N VAL A 197 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1