HEADER CELL CYCLE 29-MAR-16 5J19 TITLE PHOSPHO-PON BINDING-INDUCED PLK1 DIMERIZATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: POLO-BOX DOMAIN, UNP RESIDUES 367-594; COMPND 5 SYNONYM: POLO-LIKE KINASE 1,PLK-1,SERINE/THREONINE-PROTEIN KINASE 13, COMPND 6 STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHORYLATED PEPTIDE FROM PARTNER OF NUMB; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: PON; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 12 ORGANISM_COMMON: FRUIT FLY; SOURCE 13 ORGANISM_TAXID: 7227 KEYWDS POLO-BOX DOMAIN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZHU,Z.SHAN,L.ZHANG,W.WEN REVDAT 4 09-OCT-24 5J19 1 REMARK REVDAT 3 08-NOV-23 5J19 1 JRNL REMARK REVDAT 2 20-JUL-16 5J19 1 JRNL REVDAT 1 15-JUN-16 5J19 0 JRNL AUTH K.ZHU,Z.SHAN,L.ZHANG,W.WEN JRNL TITL PHOSPHO-PON BINDING-MEDIATED FINE-TUNING OF PLK1 ACTIVITY JRNL REF STRUCTURE V. 24 1110 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27238966 JRNL DOI 10.1016/J.STR.2016.04.012 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 41823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8362 - 4.9296 0.93 2648 147 0.2051 0.1876 REMARK 3 2 4.9296 - 3.9138 0.89 2433 118 0.1678 0.1795 REMARK 3 3 3.9138 - 3.4194 0.98 2664 132 0.2021 0.2378 REMARK 3 4 3.4194 - 3.1069 1.00 2688 135 0.2255 0.2281 REMARK 3 5 3.1069 - 2.8843 1.00 2681 148 0.2238 0.2687 REMARK 3 6 2.8843 - 2.7143 1.00 2651 157 0.2352 0.2872 REMARK 3 7 2.7143 - 2.5784 1.00 2673 142 0.2347 0.2607 REMARK 3 8 2.5784 - 2.4661 1.00 2685 148 0.2376 0.2657 REMARK 3 9 2.4661 - 2.3712 1.00 2653 142 0.2175 0.2490 REMARK 3 10 2.3712 - 2.2894 1.00 2666 143 0.2230 0.2870 REMARK 3 11 2.2894 - 2.2178 1.00 2649 128 0.2182 0.2883 REMARK 3 12 2.2178 - 2.1544 1.00 2651 132 0.2295 0.2756 REMARK 3 13 2.1544 - 2.0977 1.00 2672 150 0.2368 0.2877 REMARK 3 14 2.0977 - 2.0465 1.00 2643 142 0.2581 0.2855 REMARK 3 15 2.0465 - 2.0000 1.00 2667 135 0.2708 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3674 REMARK 3 ANGLE : 1.161 4990 REMARK 3 CHIRALITY : 0.077 567 REMARK 3 PLANARITY : 0.005 627 REMARK 3 DIHEDRAL : 13.431 1286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -31.3262 -11.5186 -20.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.2181 REMARK 3 T33: 0.1539 T12: 0.0053 REMARK 3 T13: 0.0176 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.4907 L22: 0.6798 REMARK 3 L33: 0.8008 L12: 0.6895 REMARK 3 L13: 0.5265 L23: 0.2037 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0104 S13: -0.0473 REMARK 3 S21: -0.0129 S22: -0.0046 S23: -0.0053 REMARK 3 S31: 0.0149 S32: 0.0315 S33: -0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACOOH, PH 5.5, EVAPORATION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.61100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.61100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.99850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.99850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.61100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.99850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.61100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.99850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 361 REMARK 465 PRO A 362 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 465 GLU A 365 REMARK 465 PHE A 366 REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 GLY A 393 REMARK 465 LEU A 394 REMARK 465 ARG A 594 REMARK 465 GLY B 361 REMARK 465 PRO B 362 REMARK 465 GLY B 363 REMARK 465 SER B 364 REMARK 465 GLU C 52 REMARK 465 SER C 53 REMARK 465 CYS C 54 REMARK 465 PHE C 55 REMARK 465 THR C 56 REMARK 465 LYS C 66 REMARK 465 GLU D 52 REMARK 465 SER D 53 REMARK 465 CYS D 54 REMARK 465 PHE D 55 REMARK 465 THR D 56 REMARK 465 ASN D 57 REMARK 465 LYS D 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 384 CG1 CG2 REMARK 470 SER A 387 OG REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 GLU A 391 OE1 OE2 REMARK 470 ARG A 392 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 395 CG1 CG2 REMARK 470 ARG A 396 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 PRO A 403 CG CD REMARK 470 ILE A 406 CD1 REMARK 470 ILE A 443 CD1 REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 ARG A 456 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 457 CG OD1 OD2 REMARK 470 THR A 459 OG1 CG2 REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 LEU A 463 CG CD1 CD2 REMARK 470 SER A 467 OG REMARK 470 ASN A 470 CG OD1 ND2 REMARK 470 LEU A 472 CG CD1 CD2 REMARK 470 MET A 473 CG SD CE REMARK 470 LYS A 474 NZ REMARK 470 SER A 487 OG REMARK 470 LYS A 492 CE NZ REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 ARG A 507 CD NE CZ NH1 NH2 REMARK 470 GLN A 536 CD OE1 NE2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 LYS A 556 CE NZ REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 568 CG CD OE1 OE2 REMARK 470 GLU A 569 CG CD OE1 OE2 REMARK 470 LYS A 574 NZ REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 SER A 592 OG REMARK 470 SER A 593 OG REMARK 470 GLU B 365 CG CD OE1 OE2 REMARK 470 GLU B 368 CG CD OE1 OE2 REMARK 470 GLN B 379 CG CD OE1 NE2 REMARK 470 LYS B 388 CG CD CE NZ REMARK 470 LEU B 394 CD1 CD2 REMARK 470 VAL B 395 CG1 CG2 REMARK 470 ARG B 396 CZ NH1 NH2 REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 GLU B 455 CG CD OE1 OE2 REMARK 470 ARG B 456 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 457 CG OD1 OD2 REMARK 470 THR B 459 OG1 CG2 REMARK 470 VAL B 465 CG1 CG2 REMARK 470 SER B 467 OG REMARK 470 ASN B 470 CG OD1 ND2 REMARK 470 SER B 471 OG REMARK 470 MET B 473 CG SD CE REMARK 470 LYS B 474 CD CE NZ REMARK 470 SER B 487 OG REMARK 470 LYS B 492 CD CE NZ REMARK 470 GLU B 501 CG CD OE1 OE2 REMARK 470 ARG B 507 NH1 NH2 REMARK 470 ARG B 512 CZ NH1 NH2 REMARK 470 GLN B 536 CD OE1 NE2 REMARK 470 GLU B 555 CG CD OE1 OE2 REMARK 470 LYS B 556 CG CD CE NZ REMARK 470 ASP B 558 CG OD1 OD2 REMARK 470 ARG B 560 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 566 CD1 CD2 REMARK 470 GLU B 569 CG CD OE1 OE2 REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 GLU B 575 CG CD OE1 OE2 REMARK 470 ARG B 594 CD NE CZ NH1 NH2 REMARK 470 ASN C 57 CG OD1 ND2 REMARK 470 LYS C 65 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 396 44.61 -144.19 REMARK 500 TYR A 417 42.27 -105.53 REMARK 500 ASP A 449 -44.48 -138.42 REMARK 500 ASP A 503 -157.63 -132.85 REMARK 500 ARG B 396 70.23 -116.97 REMARK 500 TYR B 417 45.59 -106.58 REMARK 500 ASP B 449 -42.26 -133.03 REMARK 500 THR B 459 92.90 -65.58 REMARK 500 LEU B 463 -160.45 -164.37 REMARK 500 ASP B 503 -160.97 -116.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 602 DBREF 5J19 A 367 594 UNP P53350 PLK1_HUMAN 367 594 DBREF 5J19 B 367 594 UNP P53350 PLK1_HUMAN 367 594 DBREF 5J19 C 52 66 UNP O96561 O96561_DROME 52 66 DBREF 5J19 D 52 66 UNP O96561 O96561_DROME 52 66 SEQADV 5J19 GLY A 361 UNP P53350 EXPRESSION TAG SEQADV 5J19 PRO A 362 UNP P53350 EXPRESSION TAG SEQADV 5J19 GLY A 363 UNP P53350 EXPRESSION TAG SEQADV 5J19 SER A 364 UNP P53350 EXPRESSION TAG SEQADV 5J19 GLU A 365 UNP P53350 EXPRESSION TAG SEQADV 5J19 PHE A 366 UNP P53350 EXPRESSION TAG SEQADV 5J19 GLY B 361 UNP P53350 EXPRESSION TAG SEQADV 5J19 PRO B 362 UNP P53350 EXPRESSION TAG SEQADV 5J19 GLY B 363 UNP P53350 EXPRESSION TAG SEQADV 5J19 SER B 364 UNP P53350 EXPRESSION TAG SEQADV 5J19 GLU B 365 UNP P53350 EXPRESSION TAG SEQADV 5J19 PHE B 366 UNP P53350 EXPRESSION TAG SEQRES 1 A 234 GLY PRO GLY SER GLU PHE GLY GLU VAL VAL ASP CYS HIS SEQRES 2 A 234 LEU SER ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SEQRES 3 A 234 SER LYS PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU SEQRES 4 A 234 ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER SEQRES 5 A 234 LYS TRP VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR SEQRES 6 A 234 GLN LEU CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SEQRES 7 A 234 SER THR ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU SEQRES 8 A 234 GLN TYR ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR SEQRES 9 A 234 VAL SER SER HIS PRO ASN SER LEU MET LYS LYS ILE THR SEQRES 10 A 234 LEU LEU LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU SEQRES 11 A 234 LEU LYS ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP SEQRES 12 A 234 GLU LEU ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG SEQRES 13 A 234 THR ARG SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER SEQRES 14 A 234 VAL GLN ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE SEQRES 15 A 234 LEU CYS PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU SEQRES 16 A 234 LYS ARG ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU SEQRES 17 A 234 GLU TYR GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG SEQRES 18 A 234 TYR ALA ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 B 234 GLY PRO GLY SER GLU PHE GLY GLU VAL VAL ASP CYS HIS SEQRES 2 B 234 LEU SER ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SEQRES 3 B 234 SER LYS PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU SEQRES 4 B 234 ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER SEQRES 5 B 234 LYS TRP VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR SEQRES 6 B 234 GLN LEU CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SEQRES 7 B 234 SER THR ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU SEQRES 8 B 234 GLN TYR ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR SEQRES 9 B 234 VAL SER SER HIS PRO ASN SER LEU MET LYS LYS ILE THR SEQRES 10 B 234 LEU LEU LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU SEQRES 11 B 234 LEU LYS ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP SEQRES 12 B 234 GLU LEU ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG SEQRES 13 B 234 THR ARG SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER SEQRES 14 B 234 VAL GLN ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE SEQRES 15 B 234 LEU CYS PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU SEQRES 16 B 234 LYS ARG ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU SEQRES 17 B 234 GLU TYR GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG SEQRES 18 B 234 TYR ALA ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SEQRES 1 C 15 GLU SER CYS PHE THR ASN ALA ALA PHE SER SER TPO PRO SEQRES 2 C 15 LYS LYS SEQRES 1 D 15 GLU SER CYS PHE THR ASN ALA ALA PHE SER SER TPO PRO SEQRES 2 D 15 LYS LYS MODRES 5J19 TPO C 63 THR MODIFIED RESIDUE MODRES 5J19 TPO D 63 THR MODIFIED RESIDUE HET TPO C 63 11 HET TPO D 63 11 HET GOL A 601 6 HET GOL B 601 6 HET GOL B 602 6 HETNAM TPO PHOSPHOTHREONINE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *106(H2 O) HELIX 1 AA1 ASP A 371 SER A 387 1 17 HELIX 2 AA2 ARG A 396 GLU A 401 5 6 HELIX 3 AA3 ASP A 402 ILE A 406 5 5 HELIX 4 AA4 PRO A 469 SER A 471 5 3 HELIX 5 AA5 LEU A 472 LEU A 490 1 19 HELIX 6 AA6 LEU A 564 GLY A 571 1 8 HELIX 7 AA7 CYS A 573 SER A 593 1 21 HELIX 8 AA8 PHE B 366 SER B 387 1 22 HELIX 9 AA9 LYS B 388 ARG B 392 5 5 HELIX 10 AB1 ARG B 396 GLU B 401 5 6 HELIX 11 AB2 ASP B 402 ILE B 406 5 5 HELIX 12 AB3 PRO B 469 SER B 471 5 3 HELIX 13 AB4 LEU B 472 LEU B 490 1 19 HELIX 14 AB5 LEU B 564 GLY B 571 1 8 HELIX 15 AB6 CYS B 573 SER B 593 1 21 SHEET 1 AA1 6 VAL A 411 ASP A 416 0 SHEET 2 AA1 6 GLY A 422 LEU A 427 -1 O GLY A 424 N VAL A 415 SHEET 3 AA1 6 VAL A 432 PHE A 436 -1 O GLY A 433 N TYR A 425 SHEET 4 AA1 6 ARG A 441 LEU A 444 -1 O LEU A 444 N VAL A 432 SHEET 5 AA1 6 SER A 450 ILE A 454 -1 O GLN A 452 N ILE A 443 SHEET 6 AA1 6 GLU A 460 THR A 464 -1 O LEU A 463 N LEU A 451 SHEET 1 AA2 6 LEU A 511 ARG A 516 0 SHEET 2 AA2 6 ALA A 520 LEU A 525 -1 O HIS A 524 N THR A 513 SHEET 3 AA2 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 AA2 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 AA2 6 ALA A 549 ILE A 553 -1 O ILE A 553 N LYS A 540 SHEET 6 AA2 6 PHE A 559 ARG A 563 -1 O ARG A 560 N TYR A 552 SHEET 1 AA3 6 VAL B 411 TYR B 417 0 SHEET 2 AA3 6 GLY B 422 LEU B 427 -1 O GLN B 426 N LYS B 413 SHEET 3 AA3 6 VAL B 432 PHE B 436 -1 O LEU B 435 N LEU B 423 SHEET 4 AA3 6 ARG B 441 LEU B 444 -1 O LEU B 444 N VAL B 432 SHEET 5 AA3 6 SER B 450 ILE B 454 -1 O GLN B 452 N ILE B 443 SHEET 6 AA3 6 GLU B 460 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 AA4 6 LEU B 511 ARG B 516 0 SHEET 2 AA4 6 ALA B 520 LEU B 525 -1 O HIS B 524 N THR B 513 SHEET 3 AA4 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 AA4 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 AA4 6 ALA B 549 ILE B 553 -1 O ALA B 549 N CYS B 544 SHEET 6 AA4 6 PHE B 559 ARG B 563 -1 O ARG B 560 N TYR B 552 LINK C SER C 62 N TPO C 63 1555 1555 1.33 LINK C TPO C 63 N PRO C 64 1555 1555 1.35 LINK C SER D 62 N TPO D 63 1555 1555 1.34 LINK C TPO D 63 N PRO D 64 1555 1555 1.34 SITE 1 AC1 5 ARG A 500 GLY A 502 ASP A 503 LEU A 505 SITE 2 AC1 5 TYR B 421 SITE 1 AC2 3 LYS B 420 ASN B 437 ASP B 438 SITE 1 AC3 3 TYR A 421 ARG B 500 ASP B 503 CRYST1 84.880 91.997 159.222 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006281 0.00000