HEADER DNA 30-MAR-16 5J3F TITLE NMR SOLUTION STRUCTURE OF [RP, RP]-PT DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*(RSG)P*CP*CP*GP*CP*CP*GP*A)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*CP*GP*GP*CP*GP*(RSG)P*CP*CP*G)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 3 ORGANISM_TAXID: 1916; SOURCE 4 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1916; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOMYCES LIVIDANS; SOURCE 8 ORGANISM_TAXID: 1916; SOURCE 9 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 1916 KEYWDS DNA, [RP, RP]-PT DSDNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.LAN,Z.HU,C.CAO REVDAT 3 15-MAY-24 5J3F 1 REMARK REVDAT 2 14-JUN-23 5J3F 1 COMPND REMARK REVDAT 1 16-NOV-16 5J3F 0 JRNL AUTH W.LAN,Z.HU,J.SHEN,C.WANG,F.JIANG,H.LIU,D.LONG,M.LIU,C.CAO JRNL TITL STRUCTURAL INVESTIGATION INTO PHYSIOLOGICAL DNA JRNL TITL 2 PHOSPHOROTHIOATE MODIFICATION JRNL REF SCI REP V. 6 25737 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27169778 JRNL DOI 10.1038/SREP25737 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219864. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 360; 360 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [RP, RP]-PT DSDNA, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D DQF-COSY; REMARK 210 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30052 RELATED DB: BMRB REMARK 900 RELATED ID: 5J3I RELATED DB: PDB REMARK 900 RELATED ID: 5J3G RELATED DB: PDB DBREF 5J3F A 1 10 PDB 5J3F 5J3F 1 10 DBREF 5J3F B 11 20 PDB 5J3F 5J3F 11 20 SEQRES 1 A 10 DC DG GS DC DC DG DC DC DG DA SEQRES 1 B 10 DT DC DG DG DC DG GS DC DC DG HET GS A 3 31 HET GS B 17 31 HETNAM GS GUANOSINE-5'-THIO-MONOPHOSPHATE FORMUL 1 GS 2(C10 H14 N5 O6 P S) LINK O3' DG A 2 P GS A 3 1555 1555 1.61 LINK O3' GS A 3 P DC A 4 1555 1555 1.61 LINK O3' DG B 16 P GS B 17 1555 1555 1.61 LINK O3' GS B 17 P DC B 18 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 34 57 CONECT 57 34 58 59 60 CONECT 58 57 CONECT 59 57 CONECT 60 57 61 CONECT 61 60 62 79 CONECT 62 61 63 64 80 CONECT 63 62 67 CONECT 64 62 65 66 81 CONECT 65 64 88 CONECT 66 64 67 82 CONECT 67 63 66 68 83 CONECT 68 67 69 78 CONECT 69 68 70 84 CONECT 70 69 71 CONECT 71 70 72 78 CONECT 72 71 73 74 CONECT 73 72 CONECT 74 72 75 85 CONECT 75 74 76 77 CONECT 76 75 86 87 CONECT 77 75 78 CONECT 78 68 71 77 CONECT 79 61 CONECT 80 62 CONECT 81 64 CONECT 82 66 CONECT 83 67 CONECT 84 69 CONECT 85 74 CONECT 86 76 CONECT 87 76 CONECT 88 65 CONECT 447 470 CONECT 470 447 471 472 473 CONECT 471 470 CONECT 472 470 CONECT 473 470 474 CONECT 474 473 475 492 CONECT 475 474 476 477 493 CONECT 476 475 480 CONECT 477 475 478 479 494 CONECT 478 477 501 CONECT 479 477 480 495 CONECT 480 476 479 481 496 CONECT 481 480 482 491 CONECT 482 481 483 497 CONECT 483 482 484 CONECT 484 483 485 491 CONECT 485 484 486 487 CONECT 486 485 CONECT 487 485 488 498 CONECT 488 487 489 490 CONECT 489 488 499 500 CONECT 490 488 491 CONECT 491 481 484 490 CONECT 492 474 CONECT 493 475 CONECT 494 477 CONECT 495 479 CONECT 496 480 CONECT 497 482 CONECT 498 487 CONECT 499 489 CONECT 500 489 CONECT 501 478 MASTER 73 0 2 0 0 0 0 6 404 2 66 2 END