HEADER PROTEIN BINDING 31-MAR-16 5J48 TITLE PKG I'S CARBOYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN A TITLE 2 COMPLEX WITH 8-PCPT-CGMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 204-336; COMPND 5 SYNONYM: CGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI; COMPND 6 EC: 2.7.11.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKG1, PRKG1B, PRKGR1A, PRKGR1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING SITES, CYCLIC AMP, CYCLIC GMP, CYCLIC GMP-DEPENDENT PROTEIN KEYWDS 2 KINASE TYPE II, MUTAGENESIS, SITE-DIRECTED, PROTEIN BINDING, ANALOGS EXPDTA X-RAY DIFFRACTION AUTHOR J.C.CAMPBELL,B.SANKARAN,C.W.KIM REVDAT 4 27-SEP-23 5J48 1 LINK REVDAT 3 27-SEP-17 5J48 1 JRNL REVDAT 2 23-AUG-17 5J48 1 JRNL REVDAT 1 12-APR-17 5J48 0 JRNL AUTH J.C.CAMPBELL,P.HENNING,E.FRANZ,B.SANKARAN,F.W.HERBERG,C.KIM JRNL TITL STRUCTURAL BASIS OF ANALOG SPECIFICITY IN PKG I AND II. JRNL REF ACS CHEM. BIOL. V. 12 2388 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28793191 JRNL DOI 10.1021/ACSCHEMBIO.7B00369 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9617 - 3.5900 0.98 3093 146 0.1680 0.1957 REMARK 3 2 3.5900 - 2.8499 0.99 3074 144 0.1506 0.1845 REMARK 3 3 2.8499 - 2.4898 1.00 3056 144 0.1484 0.1729 REMARK 3 4 2.4898 - 2.2622 0.99 3043 143 0.1461 0.1628 REMARK 3 5 2.2622 - 2.1000 0.99 3019 142 0.1415 0.1666 REMARK 3 6 2.1000 - 1.9762 0.99 3037 143 0.1490 0.1798 REMARK 3 7 1.9762 - 1.8773 0.99 3041 142 0.1626 0.1888 REMARK 3 8 1.8773 - 1.7956 0.99 3040 143 0.1659 0.1782 REMARK 3 9 1.7956 - 1.7264 0.99 3045 143 0.1784 0.1913 REMARK 3 10 1.7264 - 1.6669 0.99 3037 142 0.1863 0.2127 REMARK 3 11 1.6669 - 1.6147 0.99 3021 143 0.1893 0.2216 REMARK 3 12 1.6147 - 1.5686 0.99 3033 143 0.2018 0.2245 REMARK 3 13 1.5686 - 1.5273 0.99 3017 141 0.2258 0.2450 REMARK 3 14 1.5273 - 1.4900 0.97 2974 139 0.2566 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2150 REMARK 3 ANGLE : 1.253 2904 REMARK 3 CHIRALITY : 0.084 331 REMARK 3 PLANARITY : 0.006 362 REMARK 3 DIHEDRAL : 15.284 745 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6536 -7.9562 -37.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.1679 T22: 0.0822 REMARK 3 T33: 0.1645 T12: 0.0121 REMARK 3 T13: 0.0215 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 4.6881 L22: 1.0581 REMARK 3 L33: 1.9102 L12: 1.9686 REMARK 3 L13: 1.2160 L23: 1.1150 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -0.0227 S13: -0.2159 REMARK 3 S21: -0.0058 S22: 0.0459 S23: -0.1117 REMARK 3 S31: 0.2449 S32: 0.0919 S33: -0.0236 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8160 8.7287 -28.1533 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0633 REMARK 3 T33: 0.1290 T12: -0.0078 REMARK 3 T13: 0.0120 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.5863 L22: 2.8517 REMARK 3 L33: 3.4290 L12: -0.2818 REMARK 3 L13: -0.3148 L23: 0.2696 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: -0.0195 S13: 0.0055 REMARK 3 S21: -0.0874 S22: 0.0022 S23: 0.0533 REMARK 3 S31: 0.0400 S32: -0.0361 S33: 0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2044 -0.2814 -21.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.3621 T22: 0.4542 REMARK 3 T33: 0.3996 T12: 0.0156 REMARK 3 T13: 0.0765 T23: 0.1288 REMARK 3 L TENSOR REMARK 3 L11: 3.7032 L22: 1.0251 REMARK 3 L33: 2.0016 L12: 1.9492 REMARK 3 L13: 2.7237 L23: 1.4332 REMARK 3 S TENSOR REMARK 3 S11: 0.3760 S12: 0.1300 S13: -0.0390 REMARK 3 S21: 0.0744 S22: -0.2764 S23: -0.3408 REMARK 3 S31: 0.1517 S32: 0.2656 S33: -0.1011 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9920 -14.4179 4.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.0501 REMARK 3 T33: 0.1268 T12: -0.0043 REMARK 3 T13: 0.0299 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 6.6959 L22: 2.7927 REMARK 3 L33: 2.1287 L12: -1.9810 REMARK 3 L13: 0.6312 L23: -0.2654 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.0334 S13: -0.1253 REMARK 3 S21: 0.0821 S22: 0.0846 S23: 0.0940 REMARK 3 S31: 0.2417 S32: -0.0568 S33: 0.0159 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 252 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8805 3.6108 -2.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0563 REMARK 3 T33: 0.1149 T12: 0.0080 REMARK 3 T13: 0.0057 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.8313 L22: 3.5704 REMARK 3 L33: 4.0905 L12: 0.8491 REMARK 3 L13: -0.2387 L23: -1.8643 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0110 S13: -0.0007 REMARK 3 S21: 0.0378 S22: -0.0233 S23: -0.3170 REMARK 3 S31: -0.0229 S32: 0.1669 S33: 0.0547 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8527 5.5863 -10.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.1110 REMARK 3 T33: 0.0883 T12: -0.0414 REMARK 3 T13: -0.0170 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 3.2399 L22: 4.2733 REMARK 3 L33: 5.0993 L12: 0.1036 REMARK 3 L13: -0.8281 L23: -1.6403 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: 0.3456 S13: 0.1200 REMARK 3 S21: -0.3733 S22: 0.1391 S23: 0.0589 REMARK 3 S31: -0.0199 S32: -0.1378 S33: -0.0527 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 319 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4660 -4.1472 -4.0918 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.1063 REMARK 3 T33: 0.1343 T12: -0.0126 REMARK 3 T13: 0.0326 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.2675 L22: 6.4374 REMARK 3 L33: 2.0266 L12: -0.7337 REMARK 3 L13: 0.7749 L23: 0.7478 REMARK 3 S TENSOR REMARK 3 S11: 0.0768 S12: 0.1320 S13: -0.1582 REMARK 3 S21: -0.1378 S22: -0.0603 S23: -0.0990 REMARK 3 S31: 0.2477 S32: -0.0128 S33: -0.0289 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000217487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5-4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44551 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 59.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4KU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 200 MM CAAC, 0.1M NAAC PH REMARK 280 4.5-4.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.62000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 288 REMARK 465 PRO A 289 REMARK 465 SER A 290 REMARK 465 GLU A 291 REMARK 465 ASP B 344 REMARK 465 ASP B 345 REMARK 465 VAL B 346 REMARK 465 SER B 347 REMARK 465 ASN B 348 REMARK 465 LYS B 349 REMARK 465 ALA B 350 REMARK 465 TYR B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 223 CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 GLU A 253 OE1 OE2 REMARK 470 LYS A 278 NZ REMARK 470 ASP A 287 CG OD1 OD2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 GLN A 311 CG CD OE1 NE2 REMARK 470 LYS A 337 CD CE NZ REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS B 232 NZ REMARK 470 GLU B 242 CD OE1 OE2 REMARK 470 GLU B 243 CG CD OE1 OE2 REMARK 470 GLU B 253 OE2 REMARK 470 LYS B 278 CE NZ REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 LYS B 337 CD CE NZ REMARK 470 LEU B 343 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 317 H311 6FW B 405 1.33 REMARK 500 O HOH B 585 O HOH B 591 1.91 REMARK 500 O HOH A 508 O HOH A 609 1.93 REMARK 500 O HOH A 545 O HOH A 577 1.95 REMARK 500 O HOH A 549 O HOH A 580 1.96 REMARK 500 O HOH B 630 O HOH B 632 1.96 REMARK 500 O HOH B 583 O HOH B 620 1.98 REMARK 500 O HOH B 631 O HOH B 636 1.99 REMARK 500 O HOH A 523 O HOH A 610 2.01 REMARK 500 O HOH B 526 O HOH B 598 2.01 REMARK 500 O HOH B 624 O HOH B 629 2.03 REMARK 500 O HOH B 553 O HOH B 615 2.04 REMARK 500 O HOH B 521 O HOH B 611 2.06 REMARK 500 O HOH A 540 O HOH A 549 2.08 REMARK 500 O HOH B 519 O HOH B 629 2.10 REMARK 500 O HOH A 619 O HOH A 624 2.12 REMARK 500 O HOH A 531 O HOH A 603 2.15 REMARK 500 O HOH B 539 O HOH B 543 2.17 REMARK 500 O HOH B 603 O HOH B 617 2.17 REMARK 500 O HOH A 599 O HOH A 618 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 595 O HOH B 553 2555 2.00 REMARK 500 O HOH A 631 O HOH B 639 1554 2.08 REMARK 500 O HOH A 586 O HOH A 591 2554 2.10 REMARK 500 O HOH B 610 O HOH B 627 2455 2.14 REMARK 500 O HOH A 623 O HOH B 527 1554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 271 14.39 -140.63 REMARK 500 GLU A 324 -171.10 -176.84 REMARK 500 ASP B 287 -80.36 -107.18 REMARK 500 GLU B 324 -170.61 -177.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 639 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 308 O REMARK 620 2 GLN A 311 O 86.0 REMARK 620 3 GLU A 313 O 109.6 87.2 REMARK 620 4 EDO A 403 O2 132.7 99.7 117.5 REMARK 620 5 HOH A 573 O 93.3 168.6 82.3 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 348 O REMARK 620 2 LYS B 308 O 41.6 REMARK 620 3 GLN B 311 O 40.2 4.7 REMARK 620 4 GLU B 313 O 37.3 4.3 4.6 REMARK 620 5 HOH B 571 O 36.4 5.7 7.7 3.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FW A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6FW B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 407 DBREF 5J48 A 219 351 UNP Q13976 KGP1_HUMAN 204 336 DBREF 5J48 B 219 351 UNP Q13976 KGP1_HUMAN 204 336 SEQADV 5J48 GLY A 217 UNP Q13976 EXPRESSION TAG SEQADV 5J48 SER A 218 UNP Q13976 EXPRESSION TAG SEQADV 5J48 GLY B 217 UNP Q13976 EXPRESSION TAG SEQADV 5J48 SER B 218 UNP Q13976 EXPRESSION TAG SEQRES 1 A 135 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 A 135 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 A 135 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 A 135 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 A 135 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 A 135 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 A 135 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 A 135 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 A 135 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 A 135 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 A 135 SER ASN LYS ALA TYR SEQRES 1 B 135 GLY SER THR GLY LEU ILE LYS HIS THR GLU TYR MET GLU SEQRES 2 B 135 PHE LEU LYS SER VAL PRO THR PHE GLN SER LEU PRO GLU SEQRES 3 B 135 GLU ILE LEU SER LYS LEU ALA ASP VAL LEU GLU GLU THR SEQRES 4 B 135 HIS TYR GLU ASN GLY GLU TYR ILE ILE ARG GLN GLY ALA SEQRES 5 B 135 ARG GLY ASP THR PHE PHE ILE ILE SER LYS GLY THR VAL SEQRES 6 B 135 ASN VAL THR ARG GLU ASP SER PRO SER GLU ASP PRO VAL SEQRES 7 B 135 PHE LEU ARG THR LEU GLY LYS GLY ASP TRP PHE GLY GLU SEQRES 8 B 135 LYS ALA LEU GLN GLY GLU ASP VAL ARG THR ALA ASN VAL SEQRES 9 B 135 ILE ALA ALA GLU ALA VAL THR CYS LEU VAL ILE ASP ARG SEQRES 10 B 135 ASP SER PHE LYS HIS LEU ILE GLY GLY LEU ASP ASP VAL SEQRES 11 B 135 SER ASN LYS ALA TYR HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET 6FW A 404 46 HET EDO A 405 10 HET NA A 406 1 HET EDO B 401 10 HET EDO B 402 10 HET EDO B 403 10 HET EDO B 404 10 HET 6FW B 405 46 HET CA B 406 1 HET NA B 407 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM 6FW 2-AMINO-8-[(4-CHLOROPHENYL)SULFANYL]-9-[(2S,4AR,6R,7R, HETNAM 2 6FW 7AS)-2,7-DIHYDROXY-2-OXOTETRAHYDRO-2H,4H-2LAMBDA~5~- HETNAM 3 6FW FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-6-YL]-3,9-DIHYDRO- HETNAM 4 6FW 6H-PURIN-6-ONE HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 6 6FW 2(C16 H15 CL N5 O7 P S) FORMUL 8 NA 2(NA 1+) FORMUL 14 CA CA 2+ FORMUL 16 HOH *280(H2 O) HELIX 1 AA1 SER A 218 SER A 233 1 16 HELIX 2 AA2 VAL A 234 SER A 239 1 6 HELIX 3 AA3 PRO A 241 LEU A 252 1 12 HELIX 4 AA4 GLU A 307 GLN A 311 5 5 HELIX 5 AA5 ARG A 333 ILE A 340 1 8 HELIX 6 AA6 LEU A 343 ASN A 348 1 6 HELIX 7 AA7 SER B 218 SER B 233 1 16 HELIX 8 AA8 VAL B 234 SER B 239 1 6 HELIX 9 AA9 PRO B 241 LEU B 252 1 12 HELIX 10 AB1 GLU B 307 GLN B 311 5 5 HELIX 11 AB2 ARG B 333 ILE B 340 1 8 SHEET 1 AA1 4 GLU A 253 TYR A 257 0 SHEET 2 AA1 4 VAL A 326 ASP A 332 -1 O CYS A 328 N THR A 255 SHEET 3 AA1 4 THR A 272 LYS A 278 -1 N ILE A 275 O LEU A 329 SHEET 4 AA1 4 TRP A 304 PHE A 305 -1 O PHE A 305 N PHE A 274 SHEET 1 AA2 4 TYR A 262 ILE A 264 0 SHEET 2 AA2 4 ASN A 319 ALA A 322 -1 O VAL A 320 N ILE A 263 SHEET 3 AA2 4 VAL A 281 ARG A 285 -1 N THR A 284 O ASN A 319 SHEET 4 AA2 4 VAL A 294 LEU A 299 -1 O VAL A 294 N ARG A 285 SHEET 1 AA3 4 GLU B 253 TYR B 257 0 SHEET 2 AA3 4 VAL B 326 ASP B 332 -1 O CYS B 328 N THR B 255 SHEET 3 AA3 4 THR B 272 LYS B 278 -1 N ILE B 275 O LEU B 329 SHEET 4 AA3 4 TRP B 304 PHE B 305 -1 O PHE B 305 N PHE B 274 SHEET 1 AA4 4 TYR B 262 ILE B 264 0 SHEET 2 AA4 4 ASN B 319 ALA B 322 -1 O VAL B 320 N ILE B 263 SHEET 3 AA4 4 VAL B 281 ARG B 285 -1 N THR B 284 O ASN B 319 SHEET 4 AA4 4 VAL B 294 LEU B 299 -1 O ARG B 297 N VAL B 283 LINK O LYS A 308 NA NA A 406 1555 1555 2.28 LINK O GLN A 311 NA NA A 406 1555 1555 2.22 LINK O GLU A 313 NA NA A 406 1555 1555 2.26 LINK O ASN A 348 NA NA B 407 1555 1655 2.76 LINK O2 EDO A 403 NA NA A 406 1555 1555 2.39 LINK NA NA A 406 O HOH A 573 1555 1555 2.48 LINK O LYS B 308 NA NA B 407 1555 1555 2.41 LINK O GLN B 311 NA NA B 407 1555 1555 2.40 LINK O GLU B 313 NA NA B 407 1555 1555 2.34 LINK NA NA B 407 O HOH B 571 1555 1555 2.45 SITE 1 AC1 2 HIS A 256 GLU A 261 SITE 1 AC2 4 ASP A 303 TRP A 304 6FW A 404 HOH A 539 SITE 1 AC3 6 GLN A 311 GLU A 313 EDO A 405 NA A 406 SITE 2 AC3 6 6FW B 405 CA B 406 SITE 1 AC4 17 ILE A 264 LEU A 296 ARG A 297 LEU A 299 SITE 2 AC4 17 TRP A 304 PHE A 305 GLY A 306 GLU A 307 SITE 3 AC4 17 LYS A 308 ALA A 309 ARG A 316 THR A 317 SITE 4 AC4 17 ALA A 318 TYR A 351 EDO A 402 ASP B 287 SITE 5 AC4 17 HOH B 505 SITE 1 AC5 7 LYS A 308 THR A 317 EDO A 403 HOH A 533 SITE 2 AC5 7 ARG B 285 ASP B 287 LEU B 296 SITE 1 AC6 5 LYS A 308 GLN A 311 GLU A 313 EDO A 403 SITE 2 AC6 5 HOH A 573 SITE 1 AC7 2 HIS B 338 HOH B 529 SITE 1 AC8 5 GLU B 226 TYR B 227 SER B 277 HOH B 507 SITE 2 AC8 5 HOH B 543 SITE 1 AC9 4 GLY B 220 TYR B 227 ALA B 249 HOH B 508 SITE 1 AD1 4 ASP B 303 TRP B 304 6FW B 405 HOH B 535 SITE 1 AD2 16 EDO A 403 ILE B 264 LEU B 296 ARG B 297 SITE 2 AD2 16 LEU B 299 TRP B 304 PHE B 305 GLY B 306 SITE 3 AD2 16 GLU B 307 LYS B 308 ALA B 309 ARG B 316 SITE 4 AD2 16 THR B 317 ALA B 318 EDO B 404 CA B 406 SITE 1 AD3 4 LYS A 308 EDO A 403 ARG B 285 6FW B 405 SITE 1 AD4 5 ASN A 348 LYS B 308 GLN B 311 GLU B 313 SITE 2 AD4 5 HOH B 571 CRYST1 35.510 59.240 67.320 90.00 100.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028161 0.000000 0.005052 0.00000 SCALE2 0.000000 0.016880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015092 0.00000