data_5J4P # _entry.id 5J4P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5J4P pdb_00005j4p 10.2210/pdb5j4p/pdb WWPDB D_1000219940 ? ? BMRB 30055 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 30055 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5J4P _pdbx_database_status.recvd_initial_deposition_date 2016-04-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dvorkin, S.A.' 1 ? 'Webba da Silva, M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first eaat3007 _citation.page_last eaat3007 _citation.title 'Encoding canonical DNA quadruplex structure.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.aat3007 _citation.pdbx_database_id_PubMed 30182059 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dvorkin, S.A.' 1 0000-0003-2924-751X primary 'Karsisiotis, A.I.' 2 ? primary 'Webba da Silva, M.' 3 0000-0001-6146-2522 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*TP*TP*TP*GP*GP*TP*TP*TP*TP*GP*GP*TP*TP*TP*GP*G)-3') ; _entity.formula_weight 5630.618 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DT)(DT)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGTTTGGTTTTGGTTTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DG n 1 13 DG n 1 14 DT n 1 15 DT n 1 16 DT n 1 17 DG n 1 18 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 18 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5J4P _struct_ref.pdbx_db_accession 5J4P _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5J4P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 18 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5J4P _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 18 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-1H NOESY' 1 isotropic 2 1 2 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength '115 Na' _pdbx_nmr_exptl_sample_conditions.details '100 mM NaCl, 15 mM NaPi, pH 6.8' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label h2o_or_d2o _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '2 mM no dna, 90% H2O/10% D2O' '90% H2O/10% D2O' S173_h2o solution '100 mM NaCl, 15 mM NaPi, pH 6.8' 2 '2 mM no dna, 100% D2O' '100% D2O' S173_d2o solution '100 mM NaCl, 15 mM NaPi, pH 6.8' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VXRS _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5J4P _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 5J4P _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5J4P _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Xplor-NIH ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Felix ? 'Accelrys Software Inc.' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5J4P _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5J4P _struct.title 'DIY G-Quadruplexes: Solution structure of d(GGTTTGGTTTTGGTTTGG) in sodium' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 5J4P _struct_keywords.text 'Structure from programmed design, Structure from MOLMOL, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 7 N2 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 7 N1 ? ? A DG 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 1 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 6 O6 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 6 N7 ? ? A DG 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 13 N2 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 13 N1 ? ? A DG 2 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 6 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 6 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DT 10 O4 ? ? A DG 7 A DT 10 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 7 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 7 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DT 8 O2 ? ? ? 1_555 A DT 10 N3 ? ? A DT 8 A DT 10 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DG 18 N1 ? ? A DT 8 A DG 18 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog16 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 12 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 12 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 13 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DT 14 O4 ? ? ? 1_555 A DG 17 N1 ? ? A DT 14 A DG 17 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5J4P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 2730 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-14 2 'Structure model' 1 1 2017-08-30 3 'Structure model' 1 2 2018-02-07 4 'Structure model' 1 3 2018-10-10 5 'Structure model' 1 4 2019-05-08 6 'Structure model' 1 5 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Experimental preparation' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' struct_conn 3 3 'Structure model' pdbx_nmr_exptl_sample_conditions 4 4 'Structure model' citation 5 4 'Structure model' citation_author 6 5 'Structure model' pdbx_nmr_software 7 5 'Structure model' pdbx_seq_map_depositor_info 8 6 'Structure model' database_2 9 6 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature' 3 3 'Structure model' '_pdbx_nmr_exptl_sample_conditions.temperature_units' 4 4 'Structure model' '_citation.country' 5 4 'Structure model' '_citation.journal_abbrev' 6 4 'Structure model' '_citation.journal_id_CSD' 7 4 'Structure model' '_citation.journal_id_ISSN' 8 4 'Structure model' '_citation.journal_volume' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.pdbx_database_id_DOI' 12 4 'Structure model' '_citation.pdbx_database_id_PubMed' 13 4 'Structure model' '_citation.title' 14 4 'Structure model' '_citation.year' 15 5 'Structure model' '_pdbx_nmr_software.name' 16 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 17 6 'Structure model' '_database_2.pdbx_DOI' 18 6 'Structure model' '_database_2.pdbx_database_accession' 19 6 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 dna 2 ? mM no 2 dna 2 ? mM no # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.314 1.374 -0.060 0.007 N 2 2 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.315 1.374 -0.059 0.007 N 3 3 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.326 1.374 -0.048 0.007 N 4 4 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.327 1.374 -0.047 0.007 N 5 5 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.327 1.374 -0.047 0.007 N 6 6 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.314 1.374 -0.060 0.007 N 7 7 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.326 1.374 -0.048 0.007 N 8 8 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.327 1.374 -0.047 0.007 N 9 9 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.327 1.374 -0.047 0.007 N 10 10 C8 A DG 12 ? ? N9 A DG 12 ? ? 1.327 1.374 -0.047 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.99 122.90 -4.91 0.60 N 2 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.78 122.90 -4.12 0.60 N 3 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.52 122.90 -4.38 0.60 N 4 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.05 122.90 -4.85 0.60 N 5 1 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.31 113.10 3.21 0.50 N 6 1 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.36 108.30 2.06 0.30 N 7 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.88 108.30 5.58 0.30 N 8 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.82 122.90 -6.08 0.60 N 9 1 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.28 110.10 -6.82 1.00 N 10 1 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.77 102.40 -6.63 0.80 N 11 1 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.04 108.30 6.74 0.30 N 12 1 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.45 122.90 -4.45 0.60 N 13 1 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.26 122.90 -3.64 0.60 N 14 1 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.14 113.10 3.04 0.50 N 15 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.20 122.90 -5.70 0.60 N 16 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.28 122.90 -3.62 0.60 N 17 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.39 122.90 -4.51 0.60 N 18 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.06 122.90 -4.84 0.60 N 19 2 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.36 113.10 3.26 0.50 N 20 2 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.75 108.30 2.45 0.30 N 21 2 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.68 108.30 5.38 0.30 N 22 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.72 122.90 -6.18 0.60 N 23 2 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.20 110.10 -6.90 1.00 N 24 2 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.70 102.40 -6.70 0.80 N 25 2 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.12 108.30 6.82 0.30 N 26 2 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.40 122.90 -4.50 0.60 N 27 2 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.23 122.90 -3.67 0.60 N 28 2 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.11 113.10 3.01 0.50 N 29 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.76 122.90 -5.14 0.60 N 30 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.72 122.90 -4.18 0.60 N 31 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.71 122.90 -4.19 0.60 N 32 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.14 122.90 -3.76 0.60 N 33 3 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.14 113.10 3.04 0.50 N 34 3 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.77 108.30 2.47 0.30 N 35 3 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.89 108.30 5.59 0.30 N 36 3 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.60 122.90 -6.30 0.60 N 37 3 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.32 110.10 -6.78 1.00 N 38 3 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.77 102.40 -6.63 0.80 N 39 3 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.00 108.30 6.70 0.30 N 40 3 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.51 122.90 -4.39 0.60 N 41 3 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.29 122.90 -3.61 0.60 N 42 3 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 43 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.44 122.90 -5.46 0.60 N 44 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.66 122.90 -4.24 0.60 N 45 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.15 122.90 -3.75 0.60 N 46 4 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.78 108.30 2.48 0.30 N 47 4 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.78 108.30 5.48 0.30 N 48 4 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.84 122.90 -6.06 0.60 N 49 4 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.33 110.10 -6.77 1.00 N 50 4 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.78 102.40 -6.62 0.80 N 51 4 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 114.99 108.30 6.69 0.30 N 52 4 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.35 122.90 -4.55 0.60 N 53 4 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.23 122.90 -3.67 0.60 N 54 4 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 55 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.44 122.90 -5.46 0.60 N 56 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.66 122.90 -4.24 0.60 N 57 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.15 122.90 -3.75 0.60 N 58 5 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.78 108.30 2.48 0.30 N 59 5 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.78 108.30 5.48 0.30 N 60 5 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.84 122.90 -6.06 0.60 N 61 5 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.33 110.10 -6.77 1.00 N 62 5 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.78 102.40 -6.62 0.80 N 63 5 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 114.99 108.30 6.69 0.30 N 64 5 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.35 122.90 -4.55 0.60 N 65 5 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.23 122.90 -3.67 0.60 N 66 5 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 67 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.99 122.90 -4.91 0.60 N 68 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.78 122.90 -4.12 0.60 N 69 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.52 122.90 -4.38 0.60 N 70 6 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.05 122.90 -4.85 0.60 N 71 6 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.31 113.10 3.21 0.50 N 72 6 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.36 108.30 2.06 0.30 N 73 6 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.88 108.30 5.58 0.30 N 74 6 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.82 122.90 -6.08 0.60 N 75 6 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.28 110.10 -6.82 1.00 N 76 6 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.77 102.40 -6.63 0.80 N 77 6 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.04 108.30 6.74 0.30 N 78 6 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.45 122.90 -4.45 0.60 N 79 6 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.26 122.90 -3.64 0.60 N 80 6 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.14 113.10 3.04 0.50 N 81 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.76 122.90 -5.14 0.60 N 82 7 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.72 122.90 -4.18 0.60 N 83 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.71 122.90 -4.19 0.60 N 84 7 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.14 122.90 -3.76 0.60 N 85 7 N7 A DG 12 ? ? C8 A DG 12 ? ? N9 A DG 12 ? ? 116.14 113.10 3.04 0.50 N 86 7 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.77 108.30 2.47 0.30 N 87 7 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.89 108.30 5.59 0.30 N 88 7 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.60 122.90 -6.30 0.60 N 89 7 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.32 110.10 -6.78 1.00 N 90 7 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.77 102.40 -6.63 0.80 N 91 7 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.00 108.30 6.70 0.30 N 92 7 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.51 122.90 -4.39 0.60 N 93 7 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.29 122.90 -3.61 0.60 N 94 7 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 95 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.92 122.90 -4.98 0.60 N 96 8 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.75 122.90 -4.15 0.60 N 97 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.87 122.90 -4.03 0.60 N 98 8 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.91 122.90 -3.99 0.60 N 99 8 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.31 108.30 2.01 0.30 N 100 8 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.87 108.30 5.57 0.30 N 101 8 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.71 122.90 -6.19 0.60 N 102 8 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.28 110.10 -6.82 1.00 N 103 8 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.83 102.40 -6.57 0.80 N 104 8 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.03 108.30 6.73 0.30 N 105 8 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.45 122.90 -4.45 0.60 N 106 8 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.22 122.90 -3.68 0.60 N 107 8 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 108 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.44 122.90 -5.46 0.60 N 109 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.66 122.90 -4.24 0.60 N 110 9 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.15 122.90 -3.75 0.60 N 111 9 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.78 108.30 2.48 0.30 N 112 9 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.78 108.30 5.48 0.30 N 113 9 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.84 122.90 -6.06 0.60 N 114 9 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.33 110.10 -6.77 1.00 N 115 9 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.78 102.40 -6.62 0.80 N 116 9 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 114.99 108.30 6.69 0.30 N 117 9 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.35 122.90 -4.55 0.60 N 118 9 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.23 122.90 -3.67 0.60 N 119 9 N7 A DG 17 ? ? C8 A DG 17 ? ? N9 A DG 17 ? ? 116.16 113.10 3.06 0.50 N 120 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 117.98 122.90 -4.92 0.60 N 121 10 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.79 122.90 -4.11 0.60 N 122 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.79 122.90 -4.11 0.60 N 123 10 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.91 122.90 -3.99 0.60 N 124 10 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.43 108.30 2.13 0.30 N 125 10 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 113.91 108.30 5.61 0.30 N 126 10 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 116.77 122.90 -6.13 0.60 N 127 10 "C1'" A DT 15 ? ? "O4'" A DT 15 ? ? "C4'" A DT 15 ? ? 103.24 110.10 -6.86 1.00 N 128 10 "C3'" A DT 15 ? ? "C2'" A DT 15 ? ? "C1'" A DT 15 ? ? 95.82 102.40 -6.58 0.80 N 129 10 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 115.07 108.30 6.77 0.30 N 130 10 C6 A DT 15 ? ? C5 A DT 15 ? ? C7 A DT 15 ? ? 118.50 122.90 -4.40 0.60 N 131 10 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.28 122.90 -3.62 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 13 ? ? 0.047 'SIDE CHAIN' 2 1 DT A 16 ? ? 0.070 'SIDE CHAIN' 3 1 DG A 17 ? ? 0.070 'SIDE CHAIN' 4 2 DG A 13 ? ? 0.054 'SIDE CHAIN' 5 2 DT A 16 ? ? 0.069 'SIDE CHAIN' 6 2 DG A 17 ? ? 0.072 'SIDE CHAIN' 7 3 DG A 13 ? ? 0.055 'SIDE CHAIN' 8 3 DT A 16 ? ? 0.070 'SIDE CHAIN' 9 3 DG A 17 ? ? 0.066 'SIDE CHAIN' 10 4 DG A 13 ? ? 0.055 'SIDE CHAIN' 11 4 DT A 16 ? ? 0.069 'SIDE CHAIN' 12 4 DG A 17 ? ? 0.066 'SIDE CHAIN' 13 5 DG A 13 ? ? 0.055 'SIDE CHAIN' 14 5 DT A 16 ? ? 0.069 'SIDE CHAIN' 15 5 DG A 17 ? ? 0.066 'SIDE CHAIN' 16 6 DG A 13 ? ? 0.047 'SIDE CHAIN' 17 6 DT A 16 ? ? 0.070 'SIDE CHAIN' 18 6 DG A 17 ? ? 0.070 'SIDE CHAIN' 19 7 DG A 13 ? ? 0.055 'SIDE CHAIN' 20 7 DT A 16 ? ? 0.070 'SIDE CHAIN' 21 7 DG A 17 ? ? 0.066 'SIDE CHAIN' 22 8 DG A 13 ? ? 0.049 'SIDE CHAIN' 23 8 DT A 16 ? ? 0.071 'SIDE CHAIN' 24 8 DG A 17 ? ? 0.066 'SIDE CHAIN' 25 9 DG A 13 ? ? 0.055 'SIDE CHAIN' 26 9 DT A 16 ? ? 0.069 'SIDE CHAIN' 27 9 DG A 17 ? ? 0.066 'SIDE CHAIN' 28 10 DG A 13 ? ? 0.048 'SIDE CHAIN' 29 10 DT A 16 ? ? 0.069 'SIDE CHAIN' 30 10 DG A 17 ? ? 0.065 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5J4P 'double helix' 5J4P 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DG 6 1_555 0.460 3.786 -0.042 0.557 0.646 -92.567 1 A_DG2:DG6_A A 2 ? A 6 ? 6 3 1 A DG 13 1_555 A DG 17 1_555 -0.323 -3.846 -0.288 -0.089 5.351 90.838 2 A_DG13:DG17_A A 13 ? A 17 ? 6 3 1 A DG 1 1_555 A DG 7 1_555 -2.044 -3.164 -0.018 -5.639 1.494 88.735 3 A_DG1:DG7_A A 1 ? A 7 ? 6 3 1 A DT 10 1_555 A DT 8 1_555 0.650 3.678 -0.872 -4.403 34.966 114.342 4 A_DT10:DT8_A A 10 ? A 8 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DG 6 1_555 A DG 13 1_555 A DG 17 1_555 -1.763 -3.364 -0.110 -1.488 -0.627 178.789 -1.682 0.882 -0.109 -0.314 0.744 178.789 1 AA_DG2DG13:DG17DG6_AA A 2 ? A 6 ? A 13 ? A 17 ? 1 A DG 13 1_555 A DG 17 1_555 A DG 1 1_555 A DG 7 1_555 0.468 3.630 -0.830 -152.454 -86.740 -156.744 -1.845 0.287 -0.369 43.393 -76.268 -179.074 2 AA_DG13DG1:DG7DG17_AA A 13 ? A 17 ? A 1 ? A 7 ? 1 A DG 1 1_555 A DG 7 1_555 A DT 10 1_555 A DT 8 1_555 1.690 -0.011 2.095 2.599 6.884 63.534 -0.204 -1.523 2.145 6.515 -2.460 63.914 3 AA_DG1DT10:DT8DG7_AA A 1 ? A 7 ? A 10 ? A 8 ? # _pdbx_audit_support.funding_organization 'Biotechnology and Biological Sciences Research Council' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number BB/H005692 _pdbx_audit_support.ordinal 1 #