HEADER HYDROLASE 01-APR-16 5J4R TITLE WELO5 SMALL MOLECULE HALOGENASE WITH NI(II) AND 2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: WELO5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAPALOSIPHON WELWITSCHII UTEX B 1830; SOURCE 3 ORGANISM_TAXID: 1433842; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS 2-OXOGLUTARATE AND IRON DEPENDENDENT HALOGENASE, SMALL MOLECULE KEYWDS 2 HALOGENASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,E.GALLIMORE,I.J.CLIFTON,C.J.SCHOFIELD REVDAT 2 08-MAY-24 5J4R 1 LINK REVDAT 1 12-APR-17 5J4R 0 JRNL AUTH E.GALLIMORE,M.A.MCDONOUGH,I.J.CLIFTON,C.J.SCHOFIELD JRNL TITL WELO5 SMALL MOLECULE HALOGENASE WITH NI(II) AND JRNL TITL 2 2-OXOGLUTARATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2328: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 75312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.550 REMARK 3 FREE R VALUE TEST SET COUNT : 3430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9967 - 4.7580 1.00 3076 147 0.1485 0.1450 REMARK 3 2 4.7580 - 3.7770 1.00 3090 150 0.1118 0.1093 REMARK 3 3 3.7770 - 3.2997 1.00 3060 143 0.1309 0.1615 REMARK 3 4 3.2997 - 2.9981 1.00 3075 145 0.1395 0.1878 REMARK 3 5 2.9981 - 2.7832 1.00 3086 137 0.1348 0.1618 REMARK 3 6 2.7832 - 2.6191 1.00 3084 148 0.1368 0.1525 REMARK 3 7 2.6191 - 2.4880 1.00 3026 143 0.1301 0.1824 REMARK 3 8 2.4880 - 2.3797 1.00 3109 160 0.1297 0.1523 REMARK 3 9 2.3797 - 2.2881 1.00 3032 136 0.1271 0.1415 REMARK 3 10 2.2881 - 2.2091 1.00 3120 145 0.1335 0.1601 REMARK 3 11 2.2091 - 2.1400 1.00 3076 153 0.1330 0.1469 REMARK 3 12 2.1400 - 2.0789 0.99 3008 151 0.1354 0.1827 REMARK 3 13 2.0789 - 2.0241 0.99 3087 144 0.1375 0.1881 REMARK 3 14 2.0241 - 1.9747 0.99 3050 143 0.1403 0.1557 REMARK 3 15 1.9747 - 1.9299 0.99 3020 141 0.1431 0.1662 REMARK 3 16 1.9299 - 1.8888 0.98 3053 141 0.1488 0.1583 REMARK 3 17 1.8888 - 1.8510 0.98 3034 159 0.1501 0.1777 REMARK 3 18 1.8510 - 1.8161 0.98 3013 140 0.1539 0.2126 REMARK 3 19 1.8161 - 1.7836 0.97 2963 140 0.1612 0.2232 REMARK 3 20 1.7836 - 1.7534 0.96 2909 132 0.1624 0.2121 REMARK 3 21 1.7534 - 1.7251 0.95 2914 142 0.1810 0.2099 REMARK 3 22 1.7251 - 1.6986 0.94 2854 138 0.1959 0.2226 REMARK 3 23 1.6986 - 1.6736 0.88 2713 134 0.2172 0.2842 REMARK 3 24 1.6736 - 1.6500 0.79 2430 118 0.2451 0.2917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2299 REMARK 3 ANGLE : 1.474 3125 REMARK 3 CHIRALITY : 0.089 336 REMARK 3 PLANARITY : 0.011 415 REMARK 3 DIHEDRAL : 14.600 1379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0967 19.6558 46.4515 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1423 REMARK 3 T33: 0.1833 T12: -0.0214 REMARK 3 T13: 0.0024 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.4135 L22: 1.0361 REMARK 3 L33: 2.9459 L12: 0.3401 REMARK 3 L13: -0.9239 L23: -0.5029 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.1520 S13: 0.0261 REMARK 3 S21: -0.0002 S22: -0.0332 S23: -0.0669 REMARK 3 S31: -0.1732 S32: 0.2880 S33: -0.0066 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3062 10.6255 38.4106 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.1543 REMARK 3 T33: 0.1482 T12: 0.0180 REMARK 3 T13: 0.0160 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.8400 L22: 1.6326 REMARK 3 L33: 2.5742 L12: 0.4213 REMARK 3 L13: -0.1344 L23: 0.4941 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0030 S13: -0.1804 REMARK 3 S21: -0.1180 S22: 0.0794 S23: -0.1973 REMARK 3 S31: 0.0970 S32: 0.4199 S33: -0.0621 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 47.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 PART WELL SOLUTION: 100MM 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID PH 5.5, 100 MM SODIUM CHLORIDE, REMARK 280 22% POLYETHYLENE GLYCOL 6000 ADDED TO 1 PART PROTEIN 27 MG/ML, 5 REMARK 280 MM NICKEL CHLORIDE, 5 MM 2-OXOGLUTARATE, 20 MM 4-(2-HYDROXYETHYL) REMARK 280 -1-PIPERAZINEETHANESULFONIC ACID, 5MM (6AS,9S,10AS)-6,6,9- REMARK 280 TRIMETHYL-9-VINYL-6A,7,8,10A-TETRAHYDRO-5H-INDENO[2,1-B]INDOL-10- REMARK 280 ONE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.99000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.99000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 ILE A 232 REMARK 465 LYS A 233 REMARK 465 SER A 234 REMARK 465 ASN A 235 REMARK 465 GLN A 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 6 N CA CB CG1 CG2 REMARK 470 LYS A 24 NZ REMARK 470 ARG A 49 CZ NH1 NH2 REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 THR A 79 OG1 CG2 REMARK 470 LYS A 80 CE NZ REMARK 470 LYS A 97 CE NZ REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 611 O HOH A 635 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 37 CB SER A 37 OG -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 190 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 132 -23.48 -141.08 REMARK 500 SER A 185 -154.52 -84.55 REMARK 500 TRP A 210 120.37 -32.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 164 NE2 REMARK 620 2 HIS A 259 NE2 89.8 REMARK 620 3 AKG A 301 O1 171.6 93.4 REMARK 620 4 AKG A 301 O5 92.0 93.3 80.1 REMARK 620 5 HOH A 521 O 89.0 178.8 87.7 86.4 REMARK 620 6 HOH A 571 O 93.4 91.3 94.2 172.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 302 DBREF1 5J4R A 1 290 UNP A0A067YX61_9CYAN DBREF2 5J4R A A0A067YX61 1 290 SEQADV 5J4R SER A 0 UNP A0A067YX6 EXPRESSION TAG SEQRES 1 A 291 SER MET SER ASN ASN THR VAL SER THR LYS PRO ALA LEU SEQRES 2 A 291 HIS PHE LEU ASP ILE ASN ALA THR GLU VAL LYS LYS TYR SEQRES 3 A 291 PRO THR ALA ILE GLN ASP ILE ILE ILE ASN ARG SER PHE SEQRES 4 A 291 ASP GLY MET ILE ILE ARG GLY VAL PHE PRO ARG ASP THR SEQRES 5 A 291 MET GLU GLN VAL ALA ARG CYS LEU GLU GLU GLY ASN ASP SEQRES 6 A 291 GLY GLY MET LYS SER ILE LEU ASN LYS ASN GLU GLU PHE SEQRES 7 A 291 GLY THR LYS VAL ALA GLN ILE TYR GLY HIS ALA ILE VAL SEQRES 8 A 291 GLY GLN SER PRO ASP LEU LYS ASP TYR PHE ALA SER SER SEQRES 9 A 291 ALA ILE PHE ARG GLN ALA CYS ARG THR MET PHE GLN GLY SEQRES 10 A 291 SER PRO ASP PHE GLU GLU GLN VAL GLU SER ILE PHE HIS SEQRES 11 A 291 SER LEU SER GLY LEU PRO VAL GLU ILE PRO THR GLY PRO SEQRES 12 A 291 GLU GLY GLN THR TYR THR PRO ALA THR ILE ARG LEU LEU SEQRES 13 A 291 LEU GLU GLY ARG GLU ILE ALA VAL HIS VAL GLY ASN ASP SEQRES 14 A 291 PHE LEU LEU MET PRO ALA ALA ASN HIS LEU LYS THR LEU SEQRES 15 A 291 LEU ASP LEU SER ASP GLN LEU SER TYR PHE ILE PRO LEU SEQRES 16 A 291 THR VAL PRO GLU ALA GLY GLY GLU LEU VAL VAL TYR SER SEQRES 17 A 291 LEU GLU TRP ASN PRO GLN GLU ALA SER LYS TYR ALA GLN SEQRES 18 A 291 MET GLN GLU TYR MET ASP ASP VAL GLU PHE LYS ILE LYS SEQRES 19 A 291 SER ASN GLN SER GLN SER VAL ALA TYR ALA PRO GLY PRO SEQRES 20 A 291 GLY ASP MET LEU LEU PHE ASN GLY GLY ARG TYR TYR HIS SEQRES 21 A 291 ARG VAL SER GLU VAL ILE GLY ASN SER PRO ARG ARG THR SEQRES 22 A 291 ILE GLY GLY PHE LEU ALA PHE SER LYS GLN ARG ASP LYS SEQRES 23 A 291 ILE TYR TYR TRP SER HET AKG A 301 10 HET NI A 302 1 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM NI NICKEL (II) ION FORMUL 2 AKG C5 H6 O5 FORMUL 3 NI NI 2+ FORMUL 4 HOH *246(H2 O) HELIX 1 AA1 THR A 20 TYR A 25 5 6 HELIX 2 AA2 THR A 27 ILE A 34 1 8 HELIX 3 AA3 PRO A 48 GLY A 62 1 15 HELIX 4 AA4 GLY A 66 SER A 69 5 4 HELIX 5 AA5 ASN A 74 GLY A 78 5 5 HELIX 6 AA6 LEU A 96 GLN A 115 1 20 HELIX 7 AA7 ASP A 119 LEU A 131 1 13 HELIX 8 AA8 VAL A 165 ASN A 176 5 12 HELIX 9 AA9 HIS A 177 LEU A 181 5 5 HELIX 10 AB1 ASN A 211 SER A 216 1 6 HELIX 11 AB2 GLN A 220 LYS A 231 1 12 SHEET 1 AA1 8 PHE A 14 ASN A 18 0 SHEET 2 AA1 8 GLY A 40 ARG A 44 1 O ARG A 44 N ILE A 17 SHEET 3 AA1 8 MET A 249 PHE A 252 -1 O MET A 249 N ILE A 43 SHEET 4 AA1 8 LEU A 188 THR A 195 -1 N SER A 189 O PHE A 252 SHEET 5 AA1 8 ARG A 270 PHE A 279 -1 O LEU A 277 N LEU A 188 SHEET 6 AA1 8 THR A 151 LEU A 155 -1 N LEU A 155 O ARG A 270 SHEET 7 AA1 8 GLN A 83 TYR A 85 -1 N TYR A 85 O ILE A 152 SHEET 8 AA1 8 LEU A 71 ASN A 72 -1 N ASN A 72 O ILE A 84 SHEET 1 AA2 7 PHE A 14 ASN A 18 0 SHEET 2 AA2 7 GLY A 40 ARG A 44 1 O ARG A 44 N ILE A 17 SHEET 3 AA2 7 MET A 249 PHE A 252 -1 O MET A 249 N ILE A 43 SHEET 4 AA2 7 LEU A 188 THR A 195 -1 N SER A 189 O PHE A 252 SHEET 5 AA2 7 ARG A 270 PHE A 279 -1 O LEU A 277 N LEU A 188 SHEET 6 AA2 7 ILE A 286 TRP A 289 -1 O TRP A 289 N PHE A 276 SHEET 7 AA2 7 VAL A 136 GLU A 137 1 N GLU A 137 O ILE A 286 SHEET 1 AA3 4 ILE A 161 HIS A 164 0 SHEET 2 AA3 4 TYR A 257 VAL A 261 -1 O VAL A 261 N ILE A 161 SHEET 3 AA3 4 LEU A 203 GLU A 209 -1 N VAL A 204 O ARG A 260 SHEET 4 AA3 4 SER A 239 TYR A 242 -1 O VAL A 240 N VAL A 205 SHEET 1 AA4 2 ALA A 199 GLY A 200 0 SHEET 2 AA4 2 VAL A 264 ILE A 265 -1 O ILE A 265 N ALA A 199 LINK NE2 HIS A 164 NI NI A 302 1555 1555 2.07 LINK NE2 HIS A 259 NI NI A 302 1555 1555 2.08 LINK O1 AKG A 301 NI NI A 302 1555 1555 2.08 LINK O5 AKG A 301 NI NI A 302 1555 1555 2.09 LINK NI NI A 302 O HOH A 521 1555 1555 2.12 LINK NI NI A 302 O HOH A 571 1555 1555 2.13 CISPEP 1 SER A 117 PRO A 118 0 -3.78 SITE 1 AC1 14 ARG A 153 HIS A 164 SER A 189 PHE A 191 SITE 2 AC1 14 PHE A 252 HIS A 259 VAL A 261 ARG A 270 SITE 3 AC1 14 THR A 272 NI A 302 HOH A 460 HOH A 521 SITE 4 AC1 14 HOH A 571 HOH A 584 SITE 1 AC2 5 HIS A 164 HIS A 259 AKG A 301 HOH A 521 SITE 2 AC2 5 HOH A 571 CRYST1 52.030 102.770 123.980 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008066 0.00000