HEADER OXIDOREDUCTASE 01-APR-16 5J53 TITLE THE STRUCTURE AND MECHANISM OF NOV1, A RESVERATROL-CLEAVING TITLE 2 DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAROTENOID OXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOVOSPHINGOBIUM AROMATICIVORANS (STRAIN DSM SOURCE 3 12444 / F199); SOURCE 4 ORGANISM_TAXID: 279238; SOURCE 5 STRAIN: DSM 12444 / F199; SOURCE 6 GENE: SARO_0802; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIOXYGENASE, RESVERATROL, STILBENE, CAROTENOID, BETA-PROPELLER, KEYWDS 2 METALLOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MCANDREW,J.H.PEREIRA,N.SATHITSUKSANOH,K.L.SALE,B.A.SIMMONS, AUTHOR 2 P.D.ADAMS REVDAT 4 27-SEP-23 5J53 1 REMARK REVDAT 3 16-MAR-22 5J53 1 REMARK REVDAT 2 04-JAN-17 5J53 1 JRNL REVDAT 1 30-NOV-16 5J53 0 JRNL AUTH R.P.MCANDREW,N.SATHITSUKSANOH,M.M.MBUGHUNI,R.A.HEINS, JRNL AUTH 2 J.H.PEREIRA,A.GEORGE,K.L.SALE,B.G.FOX,B.A.SIMMONS,P.D.ADAMS JRNL TITL STRUCTURE AND MECHANISM OF NOV1, A RESVERATROL-CLEAVING JRNL TITL 2 DIOXYGENASE. JRNL REF PROC. NATL. ACAD. SCI. V. 113 14324 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27911781 JRNL DOI 10.1073/PNAS.1608917113 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2276 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.122 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 76791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7400 - 3.7858 0.99 6847 160 0.1270 0.1420 REMARK 3 2 3.7858 - 3.0052 0.98 6552 154 0.1320 0.1500 REMARK 3 3 3.0052 - 2.6253 0.96 6367 152 0.1430 0.1900 REMARK 3 4 2.6253 - 2.3853 0.95 6248 146 0.1450 0.1690 REMARK 3 5 2.3853 - 2.2144 0.93 6099 140 0.1420 0.1790 REMARK 3 6 2.2144 - 2.0838 0.92 6082 143 0.1420 0.1890 REMARK 3 7 2.0838 - 1.9795 0.91 5972 137 0.1560 0.1830 REMARK 3 8 1.9795 - 1.8933 0.85 5577 119 0.1760 0.2410 REMARK 3 9 1.8933 - 1.8204 0.82 5389 127 0.1940 0.2700 REMARK 3 10 1.8204 - 1.7576 0.81 5269 132 0.2250 0.2360 REMARK 3 11 1.7576 - 1.7026 0.79 5126 123 0.2620 0.3090 REMARK 3 12 1.7026 - 1.6540 0.75 4919 120 0.2900 0.3140 REMARK 3 13 1.6540 - 1.6104 0.71 4587 104 0.3140 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3951 REMARK 3 ANGLE : 0.995 5351 REMARK 3 CHIRALITY : 0.063 549 REMARK 3 PLANARITY : 0.008 711 REMARK 3 DIHEDRAL : 14.645 2313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9976 54.1663 64.6423 REMARK 3 T TENSOR REMARK 3 T11: 0.2047 T22: 0.2213 REMARK 3 T33: 0.1859 T12: 0.0285 REMARK 3 T13: 0.0395 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 2.7744 L22: 5.2462 REMARK 3 L33: 5.9087 L12: -1.8112 REMARK 3 L13: 2.3854 L23: -4.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: 0.0009 S13: 0.1930 REMARK 3 S21: 0.3628 S22: 0.0999 S23: 0.2992 REMARK 3 S31: -0.3949 S32: -0.1493 S33: -0.0510 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5406 48.7919 56.9520 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.1674 REMARK 3 T33: 0.1582 T12: -0.0052 REMARK 3 T13: 0.0080 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.7025 L22: 2.6993 REMARK 3 L33: 1.9906 L12: -0.1082 REMARK 3 L13: 0.0006 L23: -1.0208 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0014 S13: 0.0357 REMARK 3 S21: 0.0266 S22: 0.0301 S23: -0.0886 REMARK 3 S31: -0.0868 S32: 0.0478 S33: -0.0987 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3981 41.3805 42.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.2636 REMARK 3 T33: 0.2488 T12: 0.0173 REMARK 3 T13: 0.0631 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.1079 L22: 1.1193 REMARK 3 L33: 1.6050 L12: -0.0867 REMARK 3 L13: 0.4678 L23: 0.1304 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.1393 S13: -0.0737 REMARK 3 S21: -0.2287 S22: 0.0219 S23: -0.2505 REMARK 3 S31: 0.0134 S32: 0.2851 S33: -0.0507 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6303 38.1975 34.9423 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.2099 REMARK 3 T33: 0.1742 T12: 0.0289 REMARK 3 T13: 0.0330 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8541 L22: 1.9502 REMARK 3 L33: 1.6784 L12: 0.5526 REMARK 3 L13: 0.1064 L23: 0.5906 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.2198 S13: -0.0595 REMARK 3 S21: -0.2759 S22: -0.0003 S23: -0.0825 REMARK 3 S31: -0.0953 S32: 0.1329 S33: -0.0092 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0718 41.3212 40.3279 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.2563 REMARK 3 T33: 0.2770 T12: 0.0607 REMARK 3 T13: -0.0163 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.2536 L22: 3.0869 REMARK 3 L33: 1.3861 L12: -0.3089 REMARK 3 L13: -0.4140 L23: 0.6921 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: 0.0697 S13: 0.1628 REMARK 3 S21: -0.1199 S22: -0.0769 S23: 0.4507 REMARK 3 S31: -0.1223 S32: -0.2492 S33: 0.1022 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8071 26.9534 42.9287 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.1831 REMARK 3 T33: 0.2357 T12: -0.0133 REMARK 3 T13: 0.0087 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.3098 L22: 1.9591 REMARK 3 L33: 3.3492 L12: -0.2395 REMARK 3 L13: -0.3412 L23: 1.4028 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.0514 S13: -0.1104 REMARK 3 S21: -0.0329 S22: -0.1357 S23: 0.1225 REMARK 3 S31: 0.1694 S32: -0.2199 S33: 0.0758 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6188 31.2442 55.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.3239 REMARK 3 T33: 0.2362 T12: -0.0852 REMARK 3 T13: 0.0267 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.2054 L22: 4.4436 REMARK 3 L33: 4.3371 L12: -2.1212 REMARK 3 L13: -1.2399 L23: 1.4281 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.0598 S13: 0.1007 REMARK 3 S21: 0.0249 S22: -0.1119 S23: 0.4211 REMARK 3 S31: 0.1352 S32: -0.7259 S33: 0.1203 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3709 29.7850 61.4181 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.1850 REMARK 3 T33: 0.1447 T12: -0.0604 REMARK 3 T13: 0.0286 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.1966 L22: 6.0557 REMARK 3 L33: 3.3475 L12: -0.6868 REMARK 3 L13: -0.1446 L23: 1.7803 REMARK 3 S TENSOR REMARK 3 S11: 0.0437 S12: -0.2024 S13: -0.1674 REMARK 3 S21: 0.2741 S22: -0.0698 S23: -0.0247 REMARK 3 S31: 0.3974 S32: -0.2257 S33: 0.0305 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 442 THROUGH 488 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3838 36.1329 65.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.1972 REMARK 3 T33: 0.1377 T12: -0.0253 REMARK 3 T13: 0.0167 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.6070 L22: 4.1462 REMARK 3 L33: 2.6538 L12: 0.2910 REMARK 3 L13: 0.0382 L23: -0.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.1734 S13: -0.1045 REMARK 3 S21: 0.2809 S22: -0.0589 S23: 0.1353 REMARK 3 S31: 0.1940 S32: -0.1297 S33: 0.0410 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5J53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000219964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1271 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.98800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MGCL2, 0.08 M TRIS PH 8.5, 18% REMARK 280 (W/V) PEG 4000, AND 20% GLYCEROL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.21100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.66900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.26050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.21100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.66900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.26050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.21100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.66900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.26050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.21100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.66900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.26050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1084 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1131 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 383 REMARK 465 GLY A 384 REMARK 465 GLY A 385 REMARK 465 SER A 386 REMARK 465 ALA A 387 REMARK 465 GLY A 388 REMARK 465 GLY A 389 REMARK 465 LEU A 390 REMARK 465 GLU A 489 REMARK 465 LYS A 490 REMARK 465 VAL A 491 REMARK 465 LEU A 492 REMARK 465 ALA A 493 REMARK 465 ALA A 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 257 HG1 THR A 276 1.31 REMARK 500 O HOH A 698 O HOH A 1034 2.14 REMARK 500 O HOH A 968 O HOH A 1013 2.14 REMARK 500 O HOH A 1100 O HOH A 1125 2.16 REMARK 500 O HOH A 825 O HOH A 956 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 17 -70.27 -114.24 REMARK 500 ASP A 25 65.17 61.42 REMARK 500 PHE A 310 79.09 -116.34 REMARK 500 ASP A 456 59.87 -147.27 REMARK 500 LEU A 475 -113.49 -106.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 167 NE2 REMARK 620 2 HIS A 218 NE2 94.0 REMARK 620 3 HIS A 284 NE2 104.2 104.8 REMARK 620 4 HIS A 476 NE2 92.5 150.4 101.5 REMARK 620 5 OXY A 502 O1 174.2 81.3 80.4 90.0 REMARK 620 6 OXY A 502 O2 147.5 71.7 107.7 87.7 27.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J55 RELATED DB: PDB REMARK 900 RELATED ID: 5J54 RELATED DB: PDB DBREF 5J53 A 1 494 UNP Q2GA76 Q2GA76_NOVAD 1 494 SEQRES 1 A 494 MET ALA GLN PHE PRO ASN THR PRO SER PHE THR GLY PHE SEQRES 2 A 494 ASN THR PRO SER ARG ILE GLU ALA ASP ILE ALA ASP LEU SEQRES 3 A 494 ALA HIS GLU GLY THR ILE PRO GLN GLY LEU ASN GLY ALA SEQRES 4 A 494 PHE TYR ARG VAL GLN PRO ASP PRO GLN PHE PRO PRO ARG SEQRES 5 A 494 LEU ASP ASP ASP ILE ALA PHE ASN GLY ASP GLY MET ILE SEQRES 6 A 494 THR ARG PHE HIS ILE HIS ASP GLY GLN VAL ASP PHE ARG SEQRES 7 A 494 GLN ARG TRP ALA LYS THR ASP LYS TRP LYS LEU GLU ASN SEQRES 8 A 494 ALA ALA GLY LYS ALA LEU PHE GLY ALA TYR ARG ASN PRO SEQRES 9 A 494 LEU THR ASP ASP GLU ALA VAL LYS GLY GLU ILE ARG SER SEQRES 10 A 494 THR ALA ASN THR ASN ALA PHE VAL PHE GLY GLY LYS LEU SEQRES 11 A 494 TRP ALA MET LYS GLU ASP SER PRO ALA LEU VAL MET ASP SEQRES 12 A 494 PRO ALA THR MET GLU THR PHE GLY PHE GLU LYS PHE GLY SEQRES 13 A 494 GLY LYS MET THR GLY GLN THR PHE THR ALA HIS PRO LYS SEQRES 14 A 494 VAL ASP PRO LYS THR GLY ASN MET VAL ALA ILE GLY TYR SEQRES 15 A 494 ALA ALA SER GLY LEU CYS THR ASP ASP VAL THR TYR MET SEQRES 16 A 494 GLU VAL SER PRO GLU GLY GLU LEU VAL ARG GLU VAL TRP SEQRES 17 A 494 PHE LYS VAL PRO TYR TYR CYS MET MET HIS ASP PHE GLY SEQRES 18 A 494 ILE THR GLU ASP TYR LEU VAL LEU HIS ILE VAL PRO SER SEQRES 19 A 494 ILE GLY SER TRP GLU ARG LEU GLU GLN GLY LYS PRO HIS SEQRES 20 A 494 PHE GLY PHE ASP THR THR MET PRO VAL HIS LEU GLY ILE SEQRES 21 A 494 ILE PRO ARG ARG ASP GLY VAL ARG GLN GLU ASP ILE ARG SEQRES 22 A 494 TRP PHE THR ARG ASP ASN CYS PHE ALA SER HIS VAL LEU SEQRES 23 A 494 ASN ALA TRP GLN GLU GLY THR LYS ILE HIS PHE VAL THR SEQRES 24 A 494 CYS GLU ALA LYS ASN ASN MET PHE PRO PHE PHE PRO ASP SEQRES 25 A 494 VAL HIS GLY ALA PRO PHE ASN GLY MET GLU ALA MET SER SEQRES 26 A 494 HIS PRO THR ASP TRP VAL VAL ASP MET ALA SER ASN GLY SEQRES 27 A 494 GLU ASP PHE ALA GLY ILE VAL LYS LEU SER ASP THR ALA SEQRES 28 A 494 ALA GLU PHE PRO ARG ILE ASP ASP ARG PHE THR GLY GLN SEQRES 29 A 494 LYS THR ARG HIS GLY TRP PHE LEU GLU MET ASP MET LYS SEQRES 30 A 494 ARG PRO VAL GLU LEU ARG GLY GLY SER ALA GLY GLY LEU SEQRES 31 A 494 LEU MET ASN CYS LEU PHE HIS LYS ASP PHE GLU THR GLY SEQRES 32 A 494 ARG GLU GLN HIS TRP TRP CYS GLY PRO VAL SER SER LEU SEQRES 33 A 494 GLN GLU PRO CYS PHE VAL PRO ARG ALA LYS ASP ALA PRO SEQRES 34 A 494 GLU GLY ASP GLY TRP ILE VAL GLN VAL CYS ASN ARG LEU SEQRES 35 A 494 GLU GLU GLN ARG SER ASP LEU LEU ILE PHE ASP ALA LEU SEQRES 36 A 494 ASP ILE GLU LYS GLY PRO VAL ALA THR VAL ASN ILE PRO SEQRES 37 A 494 ILE ARG LEU ARG PHE GLY LEU HIS GLY ASN TRP ALA ASN SEQRES 38 A 494 ALA ASP GLU ILE GLY LEU ALA GLU LYS VAL LEU ALA ALA HET FE A 501 1 HET OXY A 502 2 HET PGE A 503 10 HETNAM FE FE (III) ION HETNAM OXY OXYGEN MOLECULE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 FE FE 3+ FORMUL 3 OXY O2 FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *535(H2 O) HELIX 1 AA1 THR A 7 THR A 15 5 9 HELIX 2 AA2 ILE A 57 GLY A 61 5 5 HELIX 3 AA3 THR A 84 GLY A 94 1 11 HELIX 4 AA4 ASN A 103 ASP A 107 5 5 HELIX 5 AA5 ASP A 108 LYS A 112 5 5 HELIX 6 AA6 LYS A 154 LYS A 158 5 5 HELIX 7 AA7 SER A 237 GLN A 243 1 7 HELIX 8 AA8 ARG A 268 ILE A 272 5 5 HELIX 9 AA9 ASP A 358 THR A 362 5 5 HELIX 10 AB1 ASP A 456 GLY A 460 5 5 HELIX 11 AB2 ASP A 483 ILE A 485 5 3 SHEET 1 AA1 5 ALA A 21 ILE A 23 0 SHEET 2 AA1 5 GLN A 74 TRP A 81 -1 O PHE A 77 N ILE A 23 SHEET 3 AA1 5 GLY A 63 HIS A 71 -1 N ARG A 67 O ARG A 78 SHEET 4 AA1 5 GLY A 38 PRO A 45 -1 N ARG A 42 O THR A 66 SHEET 5 AA1 5 GLY A 477 ASN A 481 -1 O ASN A 478 N TYR A 41 SHEET 1 AA2 5 HIS A 28 GLY A 30 0 SHEET 2 AA2 5 ALA A 463 ILE A 467 -1 O THR A 464 N GLU A 29 SHEET 3 AA2 5 ARG A 446 ASP A 453 -1 N LEU A 449 O VAL A 465 SHEET 4 AA2 5 GLY A 433 ARG A 441 -1 N GLN A 437 O LEU A 450 SHEET 5 AA2 5 SER A 414 LEU A 416 -1 N SER A 415 O ASN A 440 SHEET 1 AA3 5 HIS A 28 GLY A 30 0 SHEET 2 AA3 5 ALA A 463 ILE A 467 -1 O THR A 464 N GLU A 29 SHEET 3 AA3 5 ARG A 446 ASP A 453 -1 N LEU A 449 O VAL A 465 SHEET 4 AA3 5 GLY A 433 ARG A 441 -1 N GLN A 437 O LEU A 450 SHEET 5 AA3 5 CYS A 420 PRO A 423 -1 N VAL A 422 O TRP A 434 SHEET 1 AA4 4 ASN A 122 PHE A 126 0 SHEET 2 AA4 4 LYS A 129 MET A 133 -1 O TRP A 131 N PHE A 124 SHEET 3 AA4 4 LEU A 140 MET A 142 -1 O LEU A 140 N ALA A 132 SHEET 4 AA4 4 THR A 149 PHE A 152 -1 O GLY A 151 N VAL A 141 SHEET 1 AA5 4 LYS A 169 VAL A 170 0 SHEET 2 AA5 4 MET A 177 TYR A 182 -1 O VAL A 178 N LYS A 169 SHEET 3 AA5 4 ASP A 191 VAL A 197 -1 O MET A 195 N ALA A 179 SHEET 4 AA5 4 LEU A 203 LYS A 210 -1 O PHE A 209 N VAL A 192 SHEET 1 AA6 4 GLY A 221 ILE A 222 0 SHEET 2 AA6 4 TYR A 226 ILE A 231 -1 O VAL A 228 N GLY A 221 SHEET 3 AA6 4 VAL A 256 PRO A 262 -1 O ILE A 261 N LEU A 227 SHEET 4 AA6 4 ARG A 273 ARG A 277 -1 O ARG A 277 N VAL A 256 SHEET 1 AA7 2 SER A 234 GLY A 236 0 SHEET 2 AA7 2 PHE A 248 PHE A 250 -1 O GLY A 249 N ILE A 235 SHEET 1 AA8 4 PHE A 281 GLU A 291 0 SHEET 2 AA8 4 LYS A 294 ALA A 302 -1 O HIS A 296 N TRP A 289 SHEET 3 AA8 4 SER A 325 ASP A 333 -1 O THR A 328 N THR A 299 SHEET 4 AA8 4 GLY A 343 LYS A 346 -1 O VAL A 345 N ASP A 329 SHEET 1 AA9 4 ALA A 352 ARG A 356 0 SHEET 2 AA9 4 HIS A 368 GLU A 373 -1 O TRP A 370 N ARG A 356 SHEET 3 AA9 4 CYS A 394 ASP A 399 -1 O CYS A 394 N GLU A 373 SHEET 4 AA9 4 GLU A 405 TRP A 409 -1 O TRP A 408 N LEU A 395 LINK NE2 HIS A 167 FE FE A 501 1555 1555 2.09 LINK NE2 HIS A 218 FE FE A 501 1555 1555 2.00 LINK NE2 HIS A 284 FE FE A 501 1555 1555 2.02 LINK NE2 HIS A 476 FE FE A 501 1555 1555 2.00 LINK FE FE A 501 O1 OXY A 502 1555 1555 2.60 LINK FE FE A 501 O2 OXY A 502 1555 1555 2.47 SITE 1 AC1 5 HIS A 167 HIS A 218 HIS A 284 HIS A 476 SITE 2 AC1 5 OXY A 502 SITE 1 AC2 6 HIS A 218 HIS A 284 HIS A 476 FE A 501 SITE 2 AC2 6 HOH A 603 HOH A 739 SITE 1 AC3 4 VAL A 211 PRO A 212 TRP A 274 HOH A 642 CRYST1 92.422 101.338 144.521 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006919 0.00000